XLOC_003624 (itih3b)


Basic Information

Item Value
gene id XLOC_003624
gene name itih3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37178271 ~ 37200200 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007057
ATTTCATCTCAGGTCACCATGGACAAAGCTGCGCTGAGACTAACTTTATTTGGCCTTCTGTTCACCTGTGTCAACTTGGCTGCAGAAAAGaaaaaaatagaCATTTACAGCTTCCACATCAACTGTACAGTCACCGGCCGCTACGCAACCACAGTCATCACAAGTCGTGTGGCAAATGTTTTGAATAAGTCTCAAGAGGTCAATTTTGAAGTCCAAATACCCAAGAATGCCTTCATTAGTCAGTTCAGAATGACCATCGATGGGAGGACATATGATGCAATTGTGAAGGAAAAAGAGGAAGCTCAGCAGGAATACAGTCAAGCCGTATCGCGAGGAGAAAGTGCTGGATTGGTCAGTGCTGTTGGACGGACTTTAGAGGAATTTAAAACATCAGTGACAGTGGCTGCAGACAGTAAAGTAACCTTTGAGTTGACCTACGAGGAACTTTTAAAGCGCCGTCTTGGCAAATATGAGCTGCTCATCAACGCCCAACCAATGCAGCCGGTGGCGGACTTTAAGATTGACGTACACATTCATGAGAGCGCTGGAATTTCACTCTTGGAGGTCAAAGGTGGTCTGAACACTAAGGATCTGGCGAATGCAGTCACTACCACCAGAGCACAGCAAGatGCATGGGTGAAATTCTACCCCACTCGTGACCAGCAAAAGGATTGTGACGACTGTACTAAAAACGGTCTCAATGGCAACCTGGTCATTATGTATGATGTTGAAAGAGTAAAACAAAGTGGAGATTTCAAGgtaGCAAATGGCTACTTTGTCCACTACTTCGCACCTACAGATGTTGAACGCATTCCCAAAAACGTGGTATTTATTATTGATCAAAGTGGTTCTATGCAAGGCAATAAAATAGAGCAGACTCGAATGGCAATGCTGAGGATTTTGAGTGACCTTGCTAAAGATGACTACTTCGGGTTGATCACGTTCAGCAGTCACATTGAAGCCTGGAAACCAGAACTACTGAAAGCGACTGCAGAAAATGTGGAAGAAGCAAAGACATTTGTGAAGCAAATTAGGAGTGGAGGAGCTACAGACATAAATGGTGCTGTGCTAAATGCTGTAAACATGATCAACCAATACACACAAGAGGGATCCGCGTCCATCCTGATCCTGTTGACAGATGGAGACCCCACTTCAGGTGTGACCAACCCAGTGACGATTCAGCAAAATGTGAAAACGGCCATCGGTGGAAAATATCCTCTGTACTGTTTGGGTTTCGGGTTTAATGTCCGCTTTGAGTTTCTGGAAAAGATGTCATTGGAAAATAACGGCGCTGCTCGCAGAATTTATGAGGATTCTGATGCGGATCTTCAACTGCAGGGCTTTTATGAAGAAGTGGCCATTCCACTTTTGACCAATGTCCAGCTTAACTACCAAGGAGTGGCCAAAGTAACCCAAACCACTTTCAGCCAGTACTACAATGGATCTGAGATTGTGGTGGCCGGTTATATAACTGATAACAGTTTGGAAAGTTTGACGACTGAGGTCATTGCATTATCGAAAAGCACTAAGGTGGTATATAATGACAGTGTACTCACAGACGATTTCGAAAATGACGGACTTGAACACGGCAACTACATTAGTAGATTATGGGCCTTTCTCACAGTGAAGCAGTTACTGGCGAAAACCATGCTCCTAAAAGGCCAGGAAAAAGACAACGCAAAGAAAGAAGCCCTTGATCTTTCTCTCAAGTACAAATTTGTCACACCACTTACATCGATGGTGGTCACCAAGCCTCAGGGAGACGAAGTGCAGGTTGCGGTCAAACCCAATGAAGAAAAGAGACATTCATCAGGAAGGAAACAAACGTCCAAGGACAGCACTAGAATGCATTTAGCAGCCAGTCCAGATAATATGCATTATTTTAAGACCCCTACAAGGCATCACCATGGTAGCAGAAACAAAATCGCCTCACAAAGACCCATTCAACATAGTTTCAGAAAGATTCCAATATTTGCACCTGATTATCATGACTTATTTGATGCTGAATTAGGTATGTGGTACCAATTACCAAAAACAACTCAGAAACCTCTGGCAACCTCTCCTCCATGGAAGAGCATTAGGATCTTGAAATCTTCTGGTAATGCTCAGCCTATTTGTTATGACGTTCCTTTTGCTCTTAATGTCAGACTTCAACAGAATGAcccaacagAATTCTATATGAATGGGGAGCTTGAGGCGATGGGAGGGAAAGGTTTCAAACAAATTGACATTTCTTACAAAACGAATCACCAGCTTCGGCTCAGCGCTACTAAAATTGACTACTCTTATGGGTCGGAGTCAATGACGTTTTCTTGGGATCAAGAACTCACCCACCATGAGACAGAACATGTATCTCTGGTTCTGAGGAGTAATGAAATGGACGTTACGATGGGAAACATGCGCATTGTCATTCTTCTTCATAAAGAAGATGGTAGTGTTTTTCTCTGGCCTGCAGTTCTTCAGCAGCCAAAAGATGTCAGTTCATCTGGCATTTTAGGAGAAGCTGAGGTTTCATATGAGGTGATTCTGGGATTGCAAACATCAATACTGAAGCTGAAGGACCAGGTAGTGAAGGCATCTtgGGTGACAATGAAGGACTACAGGCTTCCTGCTGCTCCTGTCATTGGATGTTGGCTTGTCCCGTTTGAAGCTGTCACGCAGAAGACGATCTCTGATTTTGCCATCACTCAGCCGTAGATTCAGCACAACTTACTACATCATTCATATCAAGCATTATCATCTGACCTAGTATCTAGTCTGTATTATGGTCACTGTTAATGTTTAAAAAGCTGTGAAATCTGCAGCATGCCTtaataatgtgaaaaatatcacattaatatgatataaaatctaacattgcctataattttttttgctttaaatttttttgctggtcgttcaaactactcatttaaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102722

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007057 True 2918 mRNA 0.43 23 37178271 37200200

Neighbor

gene id symbol gene type direction distance location
XLOC_003623 NA coding upstream 7833 37136800 ~ 37170438 (+)
XLOC_003622 card19 coding upstream 76284 37095165 ~ 37101987 (+)
XLOC_003621 bicd2 coding upstream 89337 37049105 ~ 37088934 (+)
XLOC_003619 tkta coding upstream 142436 36989696 ~ 37035835 (+)
XLOC_003620 BX248521.3 coding upstream 183463 36994694 ~ 36994808 (+)
XLOC_003625 zgc:112265 coding downstream 1283 37201483 ~ 37229533 (+)
XLOC_003626 CABZ01065569.1 coding downstream 13908 37214108 ~ 37214223 (+)
XLOC_003627 il17rc coding downstream 50639 37250839 ~ 37298938 (+)
XLOC_003628 CR936337.1 coding downstream 164246 37364446 ~ 37364560 (+)
XLOC_003629 hp1bp3 coding downstream 412014 37612214 ~ 37634030 (+)
XLOC_003369 CR854846.2 misc upstream 21055189 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 24466275 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 24484008 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 24492672 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 24498243 12679732 ~ 12680028 (+)
XLOC_003614 CR457444.3 non-coding upstream 519632 36657025 ~ 36658639 (+)
XLOC_003613 CR457444.4 non-coding upstream 521506 36653213 ~ 36656765 (+)
XLOC_003611 CR457444.6 non-coding upstream 537416 36600242 ~ 36640855 (+)
XLOC_003634 NA non-coding downstream 641057 37841257 ~ 37848711 (+)
XLOC_003636 NA non-coding downstream 794866 37995066 ~ 38000612 (+)
XLOC_003637 NA non-coding downstream 949688 38149888 ~ 38164754 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_09559074_09602026 NA coding CI01000306 null 9558978 ~ 9602246 (+)