LOC110500161 (LOC106609303)


Basic Information

Item Value
gene id LOC110500161
gene name LOC106609303
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27047963 ~ 27060560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577354.2
GTTCTACTGACGTTACTTTCTCTGACCTCAGTTTGTCAGTGGTATTTTTTCTTCGGGACACAGCGGTTTGCGGCGCCATATTGAAAGAcacaaaatattttcataaaCGCCTAAAATATCTAATTTGCCAAGATGCTGTACCTAGAGGATTACCTCGAGATGATCGAGCAGCTACCCATGGATCTCCGCGACAGATTTACGGAAATGAGAGAGATGGACCTGCAAGTTCAGAATGCCATGGACCAATTGGAGCAGAGGGTGAATGAGTTCTTTGTCAATGCAAAGAAGAACAAGCCAGAGTGGAGGGAAGAGCAGATGGGAGTTATCAAAAAGGATTATTATAAGGCATTGGAGGATGCAGATGAAAAAGTACAGCTGGCCAATCAGATTTATGATCTGGTGGACCGCCACCTGAGGAAGCTGGACCAGGAGCTGGCTAAGTTCAAGATGGAGCTGGAGGCTGACAATGCTGGCATCACTGAGATCCTGGAGAGACGATCCCTAGAGATGGACAGCCCTTCTCAGCCCGTCAACAACCACCATGCCCACTCACACACCACCGTGGAAAAGAGGAAGTACACCACGCAGCCGAGCCACCACACTACAGAGCACGTCCCGGAGAAGAAGTTCAAATCTGAAGCCCTGCTCTCCACACTCACGTCAGACGCCTCCAAGGAGAACACACCCGGCTGTCGCACCAACAGCACGACGTCAGCCTCTAATAACGTGTACAGTGTAAACTCATCCCAGCCCCTGGCCTCCTACAACCTCAGCTCTCTGCCTGCTGGGCCCGGTGCTGGGGCAGGGGCCATCACCATGGCTGCAGCGCAGGCTGTGCAGGCCACCGCACAGATGAAGGAGGGCAGGAGGACTAGCAGTCTGAAGGCCAGCTACGAGGCCATTAAAAACAATGACTTCCAGCTAGGGAGGGAGTTCTCCCTGACCTCCCGGGATACCACGGGGGCCTACTCCACCTCCGCCTTGGCCAACACCCTCACCCAGACCCTCACCCCAGCCGGCTCAGCCGTCGCCTCCGACTCCCGCGGCGGACGCAAGACCAAAGGCAACACCAAGTCTTCCAACCACCAGTCGTCGTCGTCCTCGTCTTCTTCGTCCCTGTCGTCGTGCTCCTCTTCTTCAGCCCTGGCCCAGGAGCTGTCGCAGCAGGCCTCGGCCCTCCCAGAGTCTGAGACcaacaaccaggtggactggacctACGACCCCAACGAGCCCCGCTACTGCATCTGCAACCAGGTGTCTTATGGAGAAATGGTGGGCTGTGATAATCAAGACtgCCCCATCGAGTGGTTCCACTACGGCTGCGTGGGCCTAACAGAAGCCCCGAAGGGGAAGTGGTATTGCCCCCAGTGTACTGCCGCCATGAAGAGGAGAGGCAGCAGGCACAAATAGACACCCCACCTCTACTACCCCACTCCTCATCCAGGACCATCCCCCATCCCACACCCCTACCCCTCCAAACCAACTGTCAATGCTATTTCAACTGTAGTTCCTCCCAAcaagtgtgtgtacctgttgtgGCCACACACAGTATTCTtattcacctgtctgtctgtgtgacctCTCAGGGGTCAAAACAGTGGGGTCAAGGGTTGTTATTGCAGGGTCAATCCTGTGTGAATATTTGGATGAGACACCTGACTAGAAAATCAAGACAAGGAGCCAAGACTTCCTGAAACTGCACCTCCTGGTTGGGTGTTCATTGTCCTCCCCCGCACCCCCCCTTTCCTCAATTTTGAGCCTTGGCGCGCACCTCTTCTCTCCCACGTTCATCAGACATTCCTTGCCTTTCCCCTTGTTACAGGAAGGGCTGCCACCCCCTGGCTTCCACGCACGGCTGCAACAAGAAGTGCTCATTACAGTAAAATGCTCACAGGGGAATGACACAGACTGGGAAATGTAGTCCAAGGGTGTTTATTGGACTACAAAACCCAACCCCTCTACAAGTTTTGATTTTAATTCTAAATCGAATTGATGAAACACAACTAAGACTTTTAAAAGATGAGGATTGGGACAGTGGTCATTTCAGGTAACGTATGGATGAATATGACTGAACCTCCACCATTGAGTCCTGTAAAGCTGAAGAGTTCAGAATGTACAGTGTAAGATCAGTCGTAACTGAAGCGtgtatgtctgtgagtgtaagtgtttttgtatgtgcgtgtgtgtgtcactagTCATTCTGTACTGAGACGGTGTGTTAAAGTTTCCAGAGATGTaggaaaaaaaatcaaataaagtgATCCAAGTTCTTTTGGTA

Function

NR:

description
inhibitor of growth protein 3

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11319 ING3; inhibitor of growth protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577354.2 True 2278 mRNA 0.52 11 27047963 27060560

Neighbor

gene id symbol gene type direction distance location
kcnd2 LOC106609300 coding upstream 35069 26862296 ~ 27012894 (+)
LOC110500158 LOC106609299 coding upstream 429753 26520411 ~ 26618210 (+)
LOC110500156 LOC106609297 coding upstream 536795 26449257 ~ 26511168 (+)
ncaph2 LOC106609295 coding upstream 608344 26428656 ~ 26439619 (+)
cep83 LOC106609290 coding upstream 713999 26324744 ~ 26333964 (+)
cped1 LOC106609304 coding downstream 6378 27066938 ~ 27150379 (+)
LOC110500163 LOC106609305 coding downstream 92041 27152601 ~ 27161037 (+)
stab2 stab2 coding downstream 110143 27170703 ~ 27210849 (+)
LOC110500167 NA coding downstream 248639 27309199 ~ 27311609 (+)
LOC110500177 LOC106576158 coding downstream 595816 27656376 ~ 27685960 (+)
G1722095 NA non-coding upstream 203892 26831939 ~ 26844071 (+)
G1722077 NA non-coding upstream 228364 26819365 ~ 26819599 (+)
G1722076 NA non-coding upstream 228923 26818809 ~ 26819040 (+)
G1722060 NA non-coding upstream 239280 26808425 ~ 26808683 (+)
G1722273 NA non-coding downstream 70519 27131079 ~ 27192001 (+)
G1722308 NA non-coding downstream 172571 27233131 ~ 27233392 (+)
G1722313 NA non-coding downstream 177924 27238484 ~ 27239624 (+)
G1722323 NA non-coding downstream 190594 27251154 ~ 27252736 (+)
G1722328 NA non-coding downstream 206022 27266582 ~ 27267891 (+)
G1722079 NA other upstream 226028 26821647 ~ 26821935 (+)
G1721084 pfkfb3 other upstream 1006120 26038302 ~ 26041843 (+)
G1720853 NA other upstream 1411374 25636335 ~ 25636589 (+)
G1720836 NA other upstream 1435695 25611816 ~ 25612268 (+)
LOC110501048 LOC106609163 other downstream 1261960 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 1280941 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 2152259 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 2197700 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 2829726 29890286 ~ 29891957 (+)

Expression


Co-expression Network