cped1 (LOC106609304)


Basic Information

Item Value
gene id cped1
gene name LOC106609304
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27066938 ~ 27150379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957503.1
CGACGGAGGAGGCATGTGTGCACATTTAGACCGCTCAGTGTACATCATGGAATTCCTAAACCGTTACTTTACAAGAACACTCCTCAACTATCCAGTTGAAAAGGATCTATGGTATAAACTccacttattttttttctttatccGAGGGAGTTTTACTTTTGGGAACCGGTAGACATGTGAGTGAGACTGTAATCCAGCCGTCTGCGCGGAGAGGAAGTTCGGCTActgttgatttttttttctcttagAGTAGCCTAACCCAAACCAGGTGAAGTCGCCCCCCGGTGCGCAGCCAGCGCTCGGATATAGTGGAAACCctctttgtagtctgtagtctatTTCAGGGTCTGAAGTCTTGGTGAAGTTCTTCATTTTTCTAACTTCAGTTTGGTTCTATCTGTGTCTGATCTGATGTTTTATTGCGTCCTGTTTTTGGTTCTGGATGGGAATGGCAGTTTTCTGACAGCGGGCAGGAGCAGAGTCTGATCTAGCCACAGTCATGAGGTTCCGCTACTCGAGAATGTTTTTAATAATCTGAGGAGCACTCTTccctaaagaaagagagagggaaaacttTTCCATGCTCTCTCGGGGCTCCATGGTTTTCGAGGATGTGAAAGTTGGACTGTGGCTCACTTTGCTCTAACTTCATTATCACAAATAACGGAATAACAACGTTGGGAAAaaggttttgtttgtttgtgccaGCTCACAAATCAACACTCAAATGTGCCATAGCGACGGCTCTTGGACACCGTGTACCCACTCTGAAATACAAACCAGGTCATCTTTGAAAAAAGATAACATGCAGCACAATGTTTCAGGTCGTGGCTTATTCCTGAAGTGCGTGTTTTTATAGATAGCCCCGCTGCTCTTTGTTTTTGCTAAACAACAGAGTTGTGTGAGGTCTCAGTAAGACGCGGAGAAGAAGTAGGCTAAACATCATCCCTCATGGTATGCCTTTATTCTTCTGCCAGCAAAGTTGGGAGTGAAGCGGGAATGTTTCTTCCGCGGCTCTGGACGCTCCGCCGCAGGTATTGCTCCGGACGATTATTGCTCCTAGGGGTCGCGGTGTGTCTTTTCTACCAGACCCTGATGGTGGCACGGAGTCGGTTCAAAGGCGGCCCACCCGCGGCGGATGAACGCAACAAGTCAACGATGACTGGAGCGTTGGAGGTATTTGATGAACTTCTGCAGGACCCTGCGAGGCTTATTTCTACCCTGGAGGCTTTGGAGAGGGAAATATATgTCAAGGGGTCCAATCAGAACCGGGCCGGGCGGGTCACGCGGGCCATCGTGTTGACGGGTCAGCACGTAGCCGCGGATACAGAGGTCCAGCTGTTCCAGCGGATCCTGGAGCAGCGAGGCTACGAGGTCAGCCTGTCCCGATACGCCGAGACCAACACTGCCTTGAGACACGACAacggtggcagtgtggagtggagtgtgttggtgtgtctgaGCGGTTCAGAGAAGAGTTGCCTGAGGAAAGTGTCCTTCTCCCATCTGCAGCCCCATCAGAGGGTCAACATGATACCTGGGCTGGTGGGGGCCTTCTCTGATGTGGATGGGCTCTGTCGCTTCCAGGCAGACAGCCGGCTAGCAGGCCTGGCATTACGCATCAATCCATCTGCCTGTGGATCGCCCCTCCCCAAGCTGGGAGATGTTCGTCATGTGGCACATGGTGATTGGAACCCAGCTATCACCACACTTAACTTGGTGAGCCCTGGCCTCTTTGCCATGGTGACTGTTTATGTCCTGGTCACCTCGGTAACGCCGCTCACAGCCTTCCTTCATCACACGGGCCTGGTCAGGACAAACGAAGACATGGACAGCCACACCACACAGCTCAAGCCCTTTCTTCTGCAGCAGCTGGGTCCTGATGCATCCCATGAGGCCTTGGACCATGTGAAGGAGGTCATAGGTCAGGTGTTGAGGGTGGCAGCATTGACCAATGAGGAGCCTAGCTCTCGGCACAGGTGGTGTTTCCTGTGTTTCCAGCTGATGACATTCACTCTTCAGTTCAGTGGTTCCCTTCTGCCTATCATAGTGAAGGCTGAGACTGACCTGCACTTTGATGGGCTGAGGGACCCAGGGTTTGACGGACAGATCACAAAAGAGTTCATCCTGGAAGATGCTCTTCTCTTCCTGCTCCCAGCACACAATGGACAGGCCAGACGGAAGAGCCCTTCACACACCGAGACAGACGATGGACAGAGGTATGGTGGCTGTGGGGGGACATACGGTCTCTGTCTACCAGAACACCAGACTCTCCTCCTCCTGCAGTTCCTCCGTCAGCTGAGGACACCAGGGCCATTTGAACTGCTTTATCCCGCAGCTTCTCCGCAGCGCTCTCCTATCCAAGACTTTCTCTTTCGATCGTTCCCTAGAGCGGAGGAGTCTGGGAGTGGGCTGCATTTCTCAGCATTGTTGGACAGAGTCTGTTCTCATTATACAGAGCAAAGGAACCAGACTTacagGACCAATGAAGCAGAGACACAGACCGGGTGGGACCAACACTCAGGCTCCCAGGACCTCCCTGGAGACAAAGAGAGGTGTGTGGACCCCCACCTCAGACAACTGTACACAGATCCCCCTCTGACCCTCAGCCCCCCCTTCAGTCCCTGGGTGAAGGACTACCGTGCTGAGGTCCCCTTTGACGTGGTGACCCTACGCCTCCGCCCTGAGCCCATCAGCCCAGCCTGTCACATACACCTGGATGAGCACAGAGGACCTAGAACAGCAAACTACCCGGTCGGCCTGGGAAACAGCATAATCAACATCCTAGTGACGGACGAGTCGCTCACCACAGAGCCCGAGCCTGTTGTCATGACAATATACACTTTGCACATGTACCGCGAGAGCCGTCCCAGCCTGCCGATGTTTGGGGAGCATGTGATGTGTGCCTTCGTGCAGGACTGTGGCCTGGTGGTGCAACCAGATCAGCCCTGTGGTTTGGAGCCACTCCCTGGGCCACTCTCTCCAGGCGAGCCCCAGGCCCCTACTCGGCCCTGCATCTCTGGGGATGTACCAGGTCGTTGGGTGGTTCCTTGCCTCAGCTGTTCCGACAACCGGACCTGTGACTGGAGAGAGGTTGTCTGGCAACCCGAGGGCTGTTACCACCCCTTGCTGGACCTCCCCCAGCTGCAGGACTGCATGATGCACAGGAAGGTAATGTTCATAGGTGACTCCACTAACCGGGGGATGATGTACTTCCTGATGGAGCGGGTCAACTCTAGTCTGGAGGACTGGGGCAAGGCCCACGACAGCCTGGTCTATCGCAACGTCAATCAGGGACACACACACGTCTCCTACTCCTACTACCCCCAGTTCTGGCTGGAGCAGAGCCACAGACCCACCTTCCAGAGGGCCCTGGAGCAGCTCATActgagGTCGCGACCCCTGGAGAACTCCCGTCAGACTGTGCTGGTGGCAGGAGGTGTCCAGTGGCTCAACACCAACCACCTAAGGATCATGAGAGAAGTGCTGGAGAGGGAAGGGCTACAGGATATCATGGTGGTGGTGAAGTCTCTGGGAATGGGCTTCCATCTCCCTGTGGATGGCATCCGCTCTCTCTCACTGAGAGGAGTACAGGAGCTGTACAGAGAGAACAGCAACATCATCACCGCCGCAAAGCACTATGGGTATGAGGTCATAGACACATTCAGTGTCACCATGGGCCGCTACAAAGAGTTCCTGCAGGGACGGTGCGCCTGCCATTTTCACGAGGTTGAAAAGCTGTCGTTCTCCAAGGCTCCGCTACACAGGAAGATGAAGCTTCTTCGACACGGCGAGGAACCTGGAACTAGAACCAGTGGAACTGGAACCGGGTTCAGTGATCAGCCCACCCTGCAGCACCAGGACCAGTGGGCGGGGTCTAACTCCTCCACCTATCACGTGAGAGGAGCGGTGAACCAGGTGTACTCGCAGATCCTGCTGAgcagactgtgtgtgagagacacgGGAAACTAGACCCACCCCTCACCaccactgactgtgtgtgtgtgtacttgtgtccTTGCTtactaacgtgtgtgtgtgtgcgtgcatgcgtgtgtacgtgcgtgcgtgcgtgcgtatccATACAAGCATCTctctaaaaaaaaaattgaggtcATTCCATCCAGGAAGTGCTGGAGTAACAGGAGAGTCCTGACTGGTCAGCCGTGTGACAGACATCACCACTGTCTGTCACACAGACCTCCTCTGATTGGCCCACACACTGGGCCCCCTGTCATGTGACTGCTACCTCTGCTAGGTAGAGGTTTCCAGATGGTCAAAGAGGGGGATGTCTGGCCTAATACCAAAAGACAAGGGAAGCAGCTGGAGAAAGAATAAAGAGGAGAGCGAGAGTGACTGTTGAAGGAGTGTGTCGTGTGTACATCCCACATGTAAGCCTTGCTCACCAACCAACTGACAATGCTCCCTCAAAGCTCCAGCACAAACCTTTACAATTGTATAGTTTTATAGTTGTGGAAATGTTGTTGAAATGTTGTACAGCATTGGTTCTCAATCCTCTCCTCGTGTATCCCCGGCAATTccatgtgttttgatgtattccagaactagcacacctgattcagattcaacttgtcaactaatcaagtgagctagttcagggctacaacaacattgtgaaacgtctgggggtccccgaggagaggttcgAGAACCCCTTTTGATGTGTGCCTTTGATGCCTTTGTGCATCAGGAAAGACGATCTCTTGCCATTGGAGGGACTTCTGGATATCCAGCAATTCCTCCTCATATACAGTACCTCATCCATCCACGTGTTCTGTGGACACCACAACGTATTCTATTCTATGCCAAAGATATGACGAAAGCTGAGCTATTCTTCAAGCGAATGTCTTATGTAGAATTTTCTTATATTTCTACATCTGTTTATTCGTGCCTATAATGTTGATAATCAGTGTATAATGTTTTACATGCAGCATATTGTTGACATGCTAATGAAGGACTGGTGTAATGTATGCTATGGATCTATACATATTGTCTTATCTGTCCTCTGGTCATTTTTATGGGGGGaactgagctggtgaagatgaaGGTAATTGTAACAGATagccacaaacacatgcacaggaGTGGAGACTACTCTGTTTAGTGGTCCTATGGAACATTGATAGCAAACCTAATCATTTGATTCAGTGATTTTGAAGGAAAACTGAAGGgaaaaaaaacagaaagacaTTTTCCTCATACTAAATATTATCAACACTATTAATTTATTATTAAAGAACATGTATCTTCAAATGGCACTAACTTCAGCTTTGTGTTTCCAGATGGTACATATAAGAGTTATTCCGATACAATATTCtcacattaaaatatatattttctcaaCTAAA

Function

NR:

description
cadherin-like and PC-esterase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957503.1 True 5369 mRNA 0.51 21 27066938 27150379

Neighbor

gene id symbol gene type direction distance location
LOC110500161 LOC106609303 coding upstream 6378 27047963 ~ 27060560 (+)
kcnd2 LOC106609300 coding upstream 54044 26862296 ~ 27012894 (+)
LOC110500158 LOC106609299 coding upstream 448728 26520411 ~ 26618210 (+)
LOC110500156 LOC106609297 coding upstream 555770 26449257 ~ 26511168 (+)
ncaph2 LOC106609295 coding upstream 627319 26428656 ~ 26439619 (+)
LOC110500163 LOC106609305 coding downstream 2222 27152601 ~ 27161037 (+)
stab2 stab2 coding downstream 20324 27170703 ~ 27210849 (+)
LOC110500167 NA coding downstream 158820 27309199 ~ 27311609 (+)
LOC110500177 LOC106576158 coding downstream 505997 27656376 ~ 27685960 (+)
LOC110500180 LOC106609324 coding downstream 740086 27890465 ~ 27902897 (+)
G1722095 NA non-coding upstream 222867 26831939 ~ 26844071 (+)
G1722077 NA non-coding upstream 247339 26819365 ~ 26819599 (+)
G1722076 NA non-coding upstream 247898 26818809 ~ 26819040 (+)
G1722060 NA non-coding upstream 258255 26808425 ~ 26808683 (+)
G1722308 NA non-coding downstream 82752 27233131 ~ 27233392 (+)
G1722313 NA non-coding downstream 88105 27238484 ~ 27239624 (+)
G1722323 NA non-coding downstream 100775 27251154 ~ 27252736 (+)
G1722328 NA non-coding downstream 116203 27266582 ~ 27267891 (+)
G1722346 NA non-coding downstream 141958 27292337 ~ 27292931 (+)
G1722079 NA other upstream 245003 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 735845 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 1025095 26038302 ~ 26041843 (+)
G1720853 NA other upstream 1430349 25636335 ~ 25636589 (+)
G1720836 NA other upstream 1454670 25611816 ~ 25612268 (+)
LOC110501048 LOC106609163 other downstream 1172141 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 1191122 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 2062440 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 2107881 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 2739907 29890286 ~ 29891957 (+)

Expression


Co-expression Network