LOC110500163 (LOC106609305)


Basic Information

Item Value
gene id LOC110500163
gene name LOC106609305
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27152601 ~ 27161037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957506.1
TTCTTTTCGCGTCCGTCCAATTATCTCGTAGGACATGCGCGTCTGCTTAATATGAATCCACGGGTGCGCCAATCCGAGCCTAGGAGCGCGCCGCTGAGAGACTCTGTGTGGGTTCTCCCAGTCCAGGATAAAACAGTTTGTCTGTGTTTTGGGGAACACCGTCGGGAACTTATCACCCATCCAACTGTAGGCTACTACTAGCCACTGAGACACGTGATTTGAATCACCATTCCTCCcgcgtcctctctccctccccgcgGATGTTTTTTTACTGAATTGCTCGAGATAACCACGGATTGAGGATTAGTTCTGTTAGGGTCTTATGTTGTGGGGCTAGCATGAGACAGAGCCCAGCACCGATCCAGCGCTCCATGGACATACCCTTCCCCAGTGCCCGGGAGGCAAGTCGGCTTCTGTAAATGAGGTGGCCATGGAGAGAAGAAGCGGCTGCGGAGTACATCAGATCTGCTTTCTGTTTCTCTTACTGTTTTCACTGTATCCTGTCTGCTGTCGAGCCAGTTGGATGTGGTTGGGAATAACCTCCGTGGGAGTACCAGAGAAGCTGGGCTGCGCCAATCTCCCGCTGACGCACAAGCAGAAGGACCTGTGCAAGAGAAAGCCCCATCTCCTGTCAAGCATCAAGGCCGGCGCGCGCATCGCCATCGCGGAGTGCCAGACGCAGTTCGAGCACGAGCGGTGGAACTGTTCTACCACCAAAGAGCTCTCTGTGTTCGGCTACGAGCTAACCAGTGGGACCAAGGAGACTGCGTTTATCCACGCGGTGATGGCGGCGGGGCTGGTCCAGGCAGTGACGCGCTCCTGCAGTGCGGGCAACATGACGGAATGTGGCTGTGACACCAGCCTGCAGGGCACAGGATCGCCCAGCGAAGGGTGGCACTGGGGCGGCTGCTCAGACCATATCCAGTACGGTACATGGTTCAGCAGGAAGTTCATAGATAATGCAGTGAAGAATATGTCCTCAGCCAGGGGAGGGGAGGCACTGCTCACCATGAACCAGCACAACAGTGAAGCTGGGAGACAGGCCGTCGCCAAGACGATGGCCACCGACTGCCGTTGCCACGGCGTGTCGGGCTCGTGCGCCGTGAAGACGTGCTGGCGTACCATGGCGTCGTTCGAGCGCGTGGGCAACTTCCTGAAGGAGCGTTACGAGGGAAGCGTGCAGGTGCTGGACCGCTCCAAGAGGAaggtgaggaggaaggagaaggaccAGCGCCGCATGCCCATCGGGAAGGAAGAACTTATCTTCCTCAACAAGTCTCCTAACTACTGTCTGGAGGACCGGCGCTGGGGCGTGGCGGGCACTAGAGGGCGCCGGTGTAACCGCACTTCGGCCGGCCCCGACGGGTGTAACCTGCTCTGCTGCGGTCGAGGGTATAATACACACGTGGTTCGCCACGTAGAGAGGTGCGAGTGTAAGTTTGTGTGGTGTTGCTATGTGAGGTGTCAGAAGTGTGAGAGCATGAATGACATGCACACCTGTAaatagggagagggaggcaggcgatggcacacacacacacatacacaccgtcCCCAATGAGAGACTAAAAGACTTCCCCATCATTCCTCTCTCCCATGGACAAGAGGGGCGCAGCATCAACAACCCTCCATCTCAACCCTCAGGAAGACAGTATTTATACACCACACCAGCAGAGGTAGACAAAGACAGTGGAAAATCGTTGACTTTTGAATGGCCTATCAGGGCTCAGCCTTGTAGGAGGCTATCCAATGGGACAGGAGTTCCACAGTGTTTCAGAGGTTTGAGGATCCACACACTCTGACAACCAAACATGGACATCTTCGCAATTTACTCGGATGAGTCGAAATGAGCCCCGAAACTCAGACTCCATGATAAAAACAAACTGAACTTTGATGAAAGTTAAAACCTCACTCTTCAAGTCTTCAAATGGACTCAGTGAATGGTGTGTATAAGAGGAGCAACAAAGGGACCAAAAAGTGCTTGTAGGGGGACCCTGTCCTGCAGGGCGCGCAACAGCTTTAAAGGACTGTAGAGTAGATGCAGTCAACAGTGTCAGTACATTTCCAGATCAGAACGAAGTCTCATATAGACAACAGAAGGCTAGAGCCATAGACAGTACAGGGATTGGGCAACCGTCAGAGGTTGCCATCTTTTGTGTCATTTCTATGGCTCTCTTCCAGGCTAGGGAGCAAGAACAGACCCGGCTTCCACCCATGGATGGCTCTATGGTGATCGATGGTGGATAGATTAGGCTTATTCTCGTTGGAAAGCTTGCCGTATCAATGCATAGAAAGAAGTCTTGAAATAATCATTCCAAATTTGTATTGAATTTTTGTAATAAACTTTAAAGTAATGACTTCAAAAAGATATGGTACCGTGAcatttaaaaaacttttttttttaaaatatattttggaaagATTTCTTAAcctaaaatgtttgttttgtacTATTCAGATTGCAAATTCAGGGCAGAGTGAAGCTACAGGTGCTTTAATTGAGAATATGTCAAAATGACGTAGTATTTTTGTAAATTGTTTACATTTTGTAAATATTAAATTATGCTGTATCACACGACGAGAGTGTCCTTAAGATTCAAGCCCATCCAATGCTCTTAGACATACAGCATGTGTTTGTCAAACTGTACCATTTAATGTGTTGCTTTTCTGTTTGTCATCATTGTATTAAGGTCTTTTGTTATCCTTTTGCTGTCCGATCCACTTTTTCTCtttcctgtgtttgtgtttggagcCGAAACCAGCTATAAATGAAGGAATG

Function

NR:

description
protein Wnt-16-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01558 WNT16; wingless-type MMTV integration site family, member 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957506.1 True 2779 mRNA 0.50 4 27152601 27161037

Neighbor

gene id symbol gene type direction distance location
cped1 LOC106609304 coding upstream 2222 27066938 ~ 27150379 (+)
LOC110500161 LOC106609303 coding upstream 92041 27047963 ~ 27060560 (+)
kcnd2 LOC106609300 coding upstream 139707 26862296 ~ 27012894 (+)
LOC110500158 LOC106609299 coding upstream 534391 26520411 ~ 26618210 (+)
LOC110500156 LOC106609297 coding upstream 641433 26449257 ~ 26511168 (+)
stab2 stab2 coding downstream 9666 27170703 ~ 27210849 (+)
LOC110500167 NA coding downstream 148162 27309199 ~ 27311609 (+)
LOC110500177 LOC106576158 coding downstream 495339 27656376 ~ 27685960 (+)
LOC110500180 LOC106609324 coding downstream 729428 27890465 ~ 27902897 (+)
LOC110500181 LOC106609325 coding downstream 744044 27905081 ~ 27923178 (+)
G1722095 NA non-coding upstream 308530 26831939 ~ 26844071 (+)
G1722077 NA non-coding upstream 333002 26819365 ~ 26819599 (+)
G1722076 NA non-coding upstream 333561 26818809 ~ 26819040 (+)
G1722060 NA non-coding upstream 343918 26808425 ~ 26808683 (+)
G1722308 NA non-coding downstream 72094 27233131 ~ 27233392 (+)
G1722313 NA non-coding downstream 77447 27238484 ~ 27239624 (+)
G1722323 NA non-coding downstream 90117 27251154 ~ 27252736 (+)
G1722328 NA non-coding downstream 105545 27266582 ~ 27267891 (+)
G1722346 NA non-coding downstream 131300 27292337 ~ 27292931 (+)
G1722079 NA other upstream 330666 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 821508 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 1110758 26038302 ~ 26041843 (+)
G1720853 NA other upstream 1516012 25636335 ~ 25636589 (+)
G1720836 NA other upstream 1540333 25611816 ~ 25612268 (+)
LOC110501048 LOC106609163 other downstream 1161483 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 1180464 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 2051782 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 2097223 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 2729249 29890286 ~ 29891957 (+)

Expression


Co-expression Network