LOC110500167


Basic Information

Item Value
gene id LOC110500167
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27309199 ~ 27311609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577361.2
AGCACTTCAACTTCACTTTACTGAACTGAAACTAAAGTGGTGAGACGTACAGTATATTGTGTACGGGAACAAACTCTCTCGAACACTttataaatatttctaaaaaaacaAGCTTTTAGGCCTAATTTGACCCCACAAATGGAAAGAACAGAGACAGCACCCACACTCACATAAACACAGATATGGCCACCTCCGGCAGTCTCCTGTCTGAAGAGCAGttcctgtgttctgtctgtctggatgtgttCACTGAGCCAGTCTCTACTTCATGTGGACACAACTTCTGCAAGGCCTGTATCACAAAGTACTGGGATAGGGATGACCTGTGCCAGTGTCCCATGTGTAAAAATACATTCGATAAGAGACCAGATCTGTTCGTCAATACTTTCATTTCTGAGATGGCTGCACAGTTCAGAAAGAGTGTTAGGGAATCTAACAGCAACCAAGGCCTCCACCCTGACCTACCAGGAGAAGTGCCCTGTGATGTCTGCACTGGGACAAAGCTCAAGGCCCTGAAgtcctgtctggtgtgtctggcctcttactgtgagactcacctGGAGCCTCATCAGATATCCCAAGCCTTAAAGAGGCACGAGCTAATTGACCCTGTGGAGAAACTGGAAGACAGGATGTGTAAAAAGCATGACAGACCTCTAGAGCTGTTCTGTAGAAGTGACGAGATGTCTCTTTGTGTCTTCTGCTTGAAAGCAGACCACATGACTCATGACACTGTCCCTCTAGAGGAAGAGCGTGGAGAGAGGAAGGCTCAGCTTAGGAAGACTGAGGCAGAAGTGCAgaagatgatccaggagagacTGAAGAAGGTTCAAGAGATCAAACACTCAGTAGATCTCAGCAAGAGAGAGTCAGAGCGAGAGATATCAGACAGTGTACAGGTCTTCACTGCTCTGGTTCGCTCCATTGAGAGAAGTCAGGCTGTGCTCATTGAGGTGATTGAGGAGAAGCTGAAAGCAACAGAGAGGCAGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAGTCACTGAGCTAAAGAGGAGAAGCATtgagctggagcagctctcacacactgaggaccacctccacctcctacaGAGCTTCCCATCCCTCTGCACCCCTCCAGACACCAGagactggtctgagatcagtgtTCACGGTGATCTTTGTGTGGGGACTGTGAGGAGAGCTGCGTCTCAAGTGGAGGAGACCATTATGAGTGAAGTGGAGAAGTTGTGTGACGCTGAGCTGAAGAGGATTCAGCAGTATGCAGTGGATGTGACTCTGGACCCTGATACAGCACATCCCTACCTCATCCTGTCTGAGGGTGGAAAACAAGTGAAATATGGAGACACAAAACAGAATGTTCCTAACAATCCAAAAAGGTTTCATAATTACGGTGATGTCCTTGGGAAAGAAATATTCTCCTCATGGAGATTTTATTATGAGGTGACTGTCAAAGGGAAGACTAAGTGGGATTTAGGAGTGGCCAGAGAGTCTATCAACAGGAAGAATAATAAAATCCCACTGACACCTAATAATGGATACTGGACTGTACGGCTGAGGAATGGAGAGTACAAGGCTCTAGCTGGCCCTGGTGTTCCCCTCTCCCTGAGAGAGAAGCCCCATAAATTGGGGGTGTTTGTGGATTATGAAGAGGGTCAGGTCTCCTTTTATGATGTGAAGGCCAGGTCTCATATCTACTCTTTCACTGGCTGCACCTTCACAGAGAAACTCTATCCATACTTCTGTCCctgtagtaatgatggtggtgaaaACTCTGCCCCTCTGATCATCTCTCCTGTCAATCACACAGCCTGATTAACAAGACTCTGAACTGTATTGTTGGAACGGGAACTATTTTTCATAACAGATTGCATTTCTACATTTACAAATTTAGTTTATTCAGTTAAGGTTCATTACACATTATTTGTGTTTTGTCATTGGAATCTTAGAATCAGAATTGTATTTGATCTGTCTTAAGTATGAATAAATGTtcgtattaaaaatgaaaaaggaCCAAATGTACTCTACACATTGCTTTGATTAAACCCATTTAACGCAAAAGCTGACATTTGAGAGTGAAAGCTAACTCTTCCTCACAGTccaattgtaacggttttcttggtgagaaggagagtcggaccaaaatgcggcgtgtctattgcaatccatgtttaatgaagtaacacactaaacacgaacac

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577361.2 True 2206 mRNA 0.45 2 27309199 27311609

Neighbor

gene id symbol gene type direction distance location
stab2 stab2 coding upstream 98350 27170703 ~ 27210849 (+)
LOC110500163 LOC106609305 coding upstream 148162 27152601 ~ 27161037 (+)
cped1 LOC106609304 coding upstream 158820 27066938 ~ 27150379 (+)
LOC110500161 LOC106609303 coding upstream 248639 27047963 ~ 27060560 (+)
kcnd2 LOC106609300 coding upstream 296305 26862296 ~ 27012894 (+)
LOC110500177 LOC106576158 coding downstream 344767 27656376 ~ 27685960 (+)
LOC110500180 LOC106609324 coding downstream 578856 27890465 ~ 27902897 (+)
LOC110500181 LOC106609325 coding downstream 593472 27905081 ~ 27923178 (+)
LOC110500182 LOC106609326 coding downstream 626210 27937819 ~ 27954437 (+)
LOC118942914 NA coding downstream 943016 28254592 ~ 28257603 (+)
G1722346 NA non-coding upstream 16268 27292337 ~ 27292931 (+)
G1722328 NA non-coding upstream 41308 27266582 ~ 27267891 (+)
G1722323 NA non-coding upstream 56463 27251154 ~ 27252736 (+)
G1722313 NA non-coding upstream 69575 27238484 ~ 27239624 (+)
G1722308 NA non-coding upstream 75807 27233131 ~ 27233392 (+)
G1722405 NA non-coding downstream 70587 27382196 ~ 27382529 (+)
G1722415 LOC106609312 non-coding downstream 80758 27392367 ~ 27392788 (+)
G1722524 NA non-coding downstream 254270 27565879 ~ 27570770 (+)
G1722555 NA non-coding downstream 291770 27603379 ~ 27624817 (+)
G1722565 NA non-coding downstream 313411 27625020 ~ 27626220 (+)
G1722079 NA other upstream 487264 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 978106 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 1267356 26038302 ~ 26041843 (+)
G1720853 NA other upstream 1672610 25636335 ~ 25636589 (+)
G1720836 NA other upstream 1696931 25611816 ~ 25612268 (+)
LOC110501048 LOC106609163 other downstream 1010911 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 1029892 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 1901210 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 1946651 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 2578677 29890286 ~ 29891957 (+)

Expression


Co-expression Network