LOC110500177 (LOC106576158)


Basic Information

Item Value
gene id LOC110500177
gene name LOC106576158
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27656376 ~ 27685960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957529.1
CGCATTACATCACTTTGCTACGACGTGATTGGCTGAAGGTCAATGCGTACTTCGCTCGCGGACTATCACAACCATATATCTCGACTCTCACTCGAGATATTATAGCTCTCATTGATTGCAAATATATTTTCGTTTAGTGCCCGTTTTGAGGATGGCCGAGAGCGAGGCAGACACGCCAAGCACCCCGATTGAGTTTGAGAGCAAATACTTCGAGTTTGATGGAGTGCGACTTCCACCCTTCTGCAGAGGAAAGATGGAGGAGATCGCCAACTTCTCCCTCAGAAGTAGCGACATATGGATTGTCACGTATCCCAAGTCAGgtACCAGTCTCCTTCAGGAAGTTGTGTATCTGGTGAGTCAGGGAGCGGAACCAGATGAGATTGGTCTAATGAACATCGATGAGCAGCTTCCTGTTCTGGAGTACCCTCAGCCTGGCCTAGACATTATACAGGAATTGACGTCTCCTCGTCTGATCAAAAGCCACCTGCCCTACCGCTTCCTGCCTACAGCCATGCACAATGGAGAGTCCAAGGTGATCTACATGGCGAGGAACCCTAAAGATCTTGTGGTGTCTTACTACCAGTTCCACCGCTCCCTCAGAACCATGAGCTACCGCGGAACCTTCCAGGAGTTCTGCAGACGTTTCATGAATGACAAGTTGGGATATGGTTCCTGGTTTGAGCACGTGCAGGAGTTCTGGGAGCATCGCATGGACTCAAACGTCCTCTTCCTGAAATATGAAGACATGTACAAGgacctGGGGACGTTGGTGGGGAAGCTGGCGAGGTTCCTGGGTGTCTCGTGTGACAAGGCCCAGCtggagaccatggtggagagctGCAACCAGCTCATAGAGCAGTGCTGCAACTCAGAGGCCCTCTCCATCTGCAGGGGTCGCGTGGGACTGTGGCAGGACATCTTCACCGTGTCTATGAACGACAAGTTTGACACGGTGTATAGACAGAAGATGGGCAAGTCTGACCTGACCTTTGACTTCGGCCTGTGAGGACCGGACCGACTGACCACAACGACACGAACACGGACTTacactcctcctcctgctgcctaAACACCGTAcactcctctgcctctcttcatcactcaataaatcagtcaatcaatgaatcaatcaaaCAATCACGTTTTAGATATACTGTATAACGCTGTATGAATGCTATGGTGGGGAATCATAAGTCCAGCCCAGAGTCAAGtatagagaccccccccccccatgacgcCCCTTTGATACAGAGCAAGTGTTCCGTTTTAGCTGTATCCAGGTCAGTTCCTATTTGACCTAGTCCTTAATTTTAGCACACGTTTTTCACTTTCAGTACATTACATAGCTTGTTTGTTATAAAAAGGCTTTCAATGGGCATTAGCTTAATCAGCACTAGACTTTTTGTATCAACCTTTCTTGCCGAGGTGAatggggaatgtgtgtgtgtgcgtgtgtgtacatgctCGTGTGTGAGCAAAATCACAAAAATGGCACATCACAACTGCCTTTTATATCAGTTCTGTTTGTTTATGCTGCTAAAGTGATGCCTTTCTCTGTCCTCAGACCCATAGCCACCTATAGAGTTACTGTACCACACTGAAACAACAGAGTATCCCTCCATGTTACCAGCATTCTCTGTGTGCTCTCCCCCAAGTACATGTAGCCCCTTTTCTCTTCCATTGCttgcatctctttctctcctcctcctcctccccctcctccctgctgtaaATGCCCCCAGAGAGACCAGTAGACCCCCCAACCCCCATCCCCTCTGCTCTGCTGGACACTTGTGAATGTCTTCATTGATGTGGATGTAACAACCTCAACCCCTCCCACAGGCTCAGTTCTGTGCTTTAGGACatccctctttcattctctctctctctgtatctctctctctctctctctctctctgtttctctcactctgtctgtatctctctatcgATTCAATTCAATTGGCTTTAGatacatgtgtttacattgccaaagcaagtggaatagaCAATAAACCAAAAGGGAAATAAACTCTCTTGTCAgctttttctctcattctctctgtttaCAACCGTTGGCAATCCTGCTGCAGCCCATCTCTACAAGGGTAATGGTGTGTACTTTTGTTTGGTTTTTATATGCCTGTAGGGTTGTCCTAACCTGAGCATAATGCATCGTACTTTACATGCTTGCTTGCTGGTTTATTAATAAAGTTATGTCTTCAGGA

Function

NR:

description
sulfotransferase 4A1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K11823 SULT4A1; sulfotransferase 4A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957529.1 True 2227 mRNA 0.48 7 27656376 27685960

Neighbor

gene id symbol gene type direction distance location
LOC110500167 NA coding upstream 344767 27309199 ~ 27311609 (+)
stab2 stab2 coding upstream 445527 27170703 ~ 27210849 (+)
LOC110500163 LOC106609305 coding upstream 495339 27152601 ~ 27161037 (+)
cped1 LOC106609304 coding upstream 505997 27066938 ~ 27150379 (+)
LOC110500161 LOC106609303 coding upstream 595816 27047963 ~ 27060560 (+)
LOC110500180 LOC106609324 coding downstream 204505 27890465 ~ 27902897 (+)
LOC110500181 LOC106609325 coding downstream 219121 27905081 ~ 27923178 (+)
LOC110500182 LOC106609326 coding downstream 251859 27937819 ~ 27954437 (+)
LOC118942914 NA coding downstream 568665 28254592 ~ 28257603 (+)
LOC110501048 LOC106609163 coding downstream 625058 28311018 ~ 28335924 (+)
G1722581 NA non-coding upstream 7888 27647402 ~ 27648488 (+)
G1722579 NA non-coding upstream 9095 27644345 ~ 27647281 (+)
G1722565 NA non-coding upstream 30156 27625020 ~ 27626220 (+)
G1722555 NA non-coding upstream 31559 27603379 ~ 27624817 (+)
G1722524 NA non-coding upstream 85606 27565879 ~ 27570770 (+)
G1722612 NA non-coding downstream 4770 27690730 ~ 27690957 (+)
G1722619 NA non-coding downstream 17799 27703759 ~ 27704087 (+)
G1722622 NA non-coding downstream 20626 27706586 ~ 27706808 (+)
G1722626 NA non-coding downstream 26433 27712393 ~ 27712634 (+)
G1722607 NA non-coding downstream 29469 27715429 ~ 27719033 (+)
G1722079 NA other upstream 834441 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 1325283 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 1614533 26038302 ~ 26041843 (+)
G1720853 NA other upstream 2019787 25636335 ~ 25636589 (+)
G1720836 NA other upstream 2044108 25611816 ~ 25612268 (+)
LOC110500183 LOC106609180 other downstream 655541 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 1526859 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 1572300 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 2204326 29890286 ~ 29891957 (+)

Expression


Co-expression Network