LOC110500181 (LOC106609325)


Basic Information

Item Value
gene id LOC110500181
gene name LOC106609325
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27905081 ~ 27923178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577384.2
GGTTGTCGGTTGTGAGCTGGCTGTGGCTAGCTCGAACCGCTGTCATTGcgaggcaggtgtgtgtgtcatCAGGAGCTCATACACGTCCCCAGAACACGTTGGACTAATTCTGTTGTTTTTAAATTTGTGTTAATTAATACAGCCATCATGTTGTGGACAGCGAACAGAATCATTAGGAAATTCTCTACCAGCTCTaaTTATTACCAAAATAAGCTGAGACTGGCTCTGATTGGCCAGAGCCTGTTTGGACAGGAAGTGTACACCAACCTACGGAAGCAGGGCCATAGGGTGGTGGGCGTGTTCACTGTGCCAGATAGGGATGGCAAGGCAGACCCTCTGGCGGTAGTGGCGGAGAAGGACGGGACGCCAGTCTTTAAGTTCCCGCGGTGGCGTGTCAAAGGGGAGCCCATCCCGGAAGTAGTGGAGGCCTACAAGGCGGTGGGGGCTGAGCTCAACGTCATGCCCTTCTGCTCCCAGTTCATCCCCATGAACGTGATCGACCACCCGGCCCACGGTTCCATCATCTACCACCCCTCCATCCTGCCCCTGCACCGCGGGGCCTCCGCCATCAactgGACTCTGATCCAAGGGGATAAGAAGGCTGGGTTCTCCATCTTCTGGGCTGATGATGGTCTGGACACCGGTCCCATCCTGCTCCAGAGAGAGTGTCCTGTGGAACCCAACGACACGGTGGACTCCCTCTACAATCGCTTCCTCTTTCCAGAGGGCATCAAGGCCATGGTGGAGTCAGTGCAGCTGATCGCTGATGGGAAGGCCCCACGAGTCCCTCAGACAGAGGAGGGGGCCAGCTACGAGGGTATCCAGAAGAAGTCCAACTCCAAGgttaACCTCGCCCAGCCGGCAGAGGCTATCCACAACTGGATCCGTGGCCACGACAAAGTCCCCGGGGCGTGGGCGGTCATTGATGGTCAGACTGTGACTCTGTACGGGTCGTCCATGCTGGGGGAGTCGGTGCCAGCCGGACAGCCCCTGGAGATAGAGGGGGCGTCCCAGCCTGGTGTCGTCACCAAGAACGGCCTGGTTCTGTACGGGTCAGATAGCAAAGCGCTGATGGTGAAGAACCTGCAGTTTGAGGATGGTAAGATGATCTCTGCTGCTAAGTACTTCTCTTCAGGAGACACCGCCCGCGTGGAGCTGACTGATGACGAGAAGAAGATTGCAGAGGAGATACGAGACATCTGGAAAGGCATTTTGAGCAACGTTGCTGCCATTGAGGAAACCACAGACTTCTTCAAGTCAGGAGCTGCTTCTATGGACGTGGTCAGGCTGGTGGAGGAGATCAAGCAGAGGTGTGTAGGGTTGCAGCTGCAGAATGAGGATGTGTACATGGCCACCACTTTCCAGGACTTTATCCAGATGTTTGTGAGAAGGCTGAGGGGGGAGGACCAGGAGGAGGAGATGGTCATCGACTATGCAACTAAAGACGTCAACAACATGACGGTGAAGATGCCTTGGCAGTGTTTCATCAATGGCAAGTTTGAGGACGCAGAGAACGGCAAGACCGCCAATACCATAAACCCTGCCGATGGCTCTGTGATCTGTAAGGTAGCCTATGCGTCAGTGGGAGATGTGGACCGGGCGGTAGCAGCAGCCAAAGAGGCCTTTGAGGTTGGCCCCTGGGGCAGGATGAACCCTAGAGATCGTGGAACCCTGCTGTACAAGCTGGCTGACCTGATGGAGGAGCACCAGGAGGAGTTGGCCACCATAGAGTCCATAGACTCTGGAGCTGTCTACACCCTGGCCCTGAAGACCCACGTAGGCATGTCCATCCAGACCTTCCGCTACTTCGCCGGCTGGTGCGACAAGATCCAGGGCAAGACGATACCCATCAACCAGGCCAGGCCCAATCGCAACCTGACCTTCACCAAGAAGGAACCTCTGGGTGTGTGTGCCATCGTCATTCCCTGGAACTACCCACTCATGATGCTGGCATGGAAGAGTGCCGCTTGCCTCGCTGCTGGAAACACACTGGTCCTGAAACCTGCacagGTTACTCCTCTGTCAGCCCTGAAGTTTGCTGAGCTGACTGTGAAGGCTGGCATTCCCAAGGGAGTCATCAACATCGTACCTGGCTCAGGTGGGATGGTGGGACAGCGCTTGTCTGACCACCCTGACATCCGTAAACTGGGCTTCACAGGCTCCACCCCTATCGGCAAACAGATCATGAAAAGCTGTGCGCTGAGTAACCTGAAGAAGGTTTCTCTGGAGCTAGGAGGGAAGTCTCCACTCATCATCTTCAGCGACTGTGACATGGACAAGGCTGTGCgcatgGGTATGAGTTCTGTGTTCTTCAACAAAGGAGAGAACTGCATTGCTGCTGGACGCCTGTTCGTGGAGGAGTCCATACATGACGAGTACATCAAGAGAGTGTTGGAGGAGATAAAGAAGATGAAGGTGGGTGATCCTCTGGACCGCTCCACGGAGCACGGGCCCCAGAACCACAAGGCCCACATGGATAAGCTGGTGGAGTACTGTGAGGTGGGCGTGAAGGAGGGCGCCACGCTGGTGTACGGGGGCAAACAGGTGGACAGGCCAGGGTTCTTCATGGAGCCCACACTGTTCACAGACGTGGAGGATCACATGTTCATCGCCAAAGAGGAGTCCTTTGGTCCCATAATGGTGGTGTCCAAGTTCAAAGACGGTGACATAGATGGCGTGCTAAACAGAGCCAACGACACCGAGTTCGGCCTGGCGTCCGGTGTGTTCACGCGCGACATCAACAAGGCCATGTACGTGAGCGAGAGGCTGGACGCCGGGACCGTGTTCGTCAACACTTACAACAAGACCGACGTGGCCTCGCCGTTCGGTGGTTTCAAACAGTCGGGCTTCGGTAAAGACCTTGGAGAGGATGCTCTTAACGAATACCTCAGGACCAAAGCAGTGACTGTGGAGTACTAAGGCAGCCAGCCACTCCTAATAAACTGTAACAACGACTGAACACTCAATCCACCTGATCACGACTCACCAGTCAGTCTTGATCAAGAGTCCAGCTCCGCTTTCCtaacagcaggtgtgtgtgagagaggagacCTTTAATGTGTAGCCTACCCTCTGCCACGACCTCGTCTCAAGGGGCCTACAGTTTGAGCATTCTGGTCGAAAACTTGCATTATGGACACAGGCGGTTTTCCCCAAAGTTACAAAAAGGGAAATGCACATATCAAACGCAGAGGTGGATTTCAGTATTCCAGAGCCAAGGTGGATTTGACTGGATCAACACCCCTTCACTTTGAGTTTAAGGTTTCGGTTCCTCCACTCATTATGAAAGAACGTTTTGCTTTTCAAAAGCCGAGCGCTTCAGGCAATCTCCTCCTGCTCTGTTACAGTCACACATCTTTTGCAACATTTAATTTTAACTCAAGCATGCAGGTTCAAATTCGTATGTCATTTCTGCTCAGCAATGTTAGGTGCCACACTTCTGCTGAAGATAGCCACAACTCCCTTAGTTAAATTGTTATTTGTAAATATTTTATAACAAAAGAAAACACACTGAATAATTGGATATATTTTTTTGACATTGTATTTCTGTCAGAAAATGAGCACTGTAGGTTACAACACTAGATTATGCATTTTTAAAGCACACCAACCTACCTgcccctgttttggtaaaaaactGAGGGAcgggactggagaaatgtaactactctcaaatgtatagacagagcaatggatgcaaggactgaccttCAATgacatcaacattatagttttaaacGATGATTTGAGGCTATGTAGTTTACTTTGTTCACAAAAAATGAAGTAGAAaaagcttatatttggggttatgatggggtacgacagttcaACTAAGCTCATTAAGCATTTCTAAGGTatattcaagaatcaatgagtACATATCAATTTAAGTCAAAAAATATATGTAGAAACTGCAGATTGTCCCTAAGTTTTTAGTAAATAATACATATTAATTTAAATACGATATTAAATAAACTTCCTTTGAAAGAC

Function

NR:

description
mitochondrial 10-formyltetrahydrofolate dehydrogenase-like

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00289 ALDH1L; formyltetrahydrofolate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577384.2 True 3987 mRNA 0.51 23 27905081 27923178

Neighbor

gene id symbol gene type direction distance location
LOC110500180 LOC106609324 coding upstream 2184 27890465 ~ 27902897 (+)
LOC110500177 LOC106576158 coding upstream 219121 27656376 ~ 27685960 (+)
LOC110500167 NA coding upstream 593472 27309199 ~ 27311609 (+)
stab2 stab2 coding upstream 694232 27170703 ~ 27210849 (+)
LOC110500163 LOC106609305 coding upstream 744044 27152601 ~ 27161037 (+)
LOC110500182 LOC106609326 coding downstream 14641 27937819 ~ 27954437 (+)
LOC118942914 NA coding downstream 331447 28254592 ~ 28257603 (+)
LOC110501048 LOC106609163 coding downstream 387840 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 coding downstream 418245 28341423 ~ 28343734 (+)
utp20 utp20 coding downstream 428773 28351951 ~ 28376045 (+)
G1722671 NA non-coding upstream 83518 27820446 ~ 27821563 (+)
G1722654 LOC106609323 non-coding upstream 137641 27763030 ~ 27767440 (+)
G1722630 NA non-coding upstream 175022 27729805 ~ 27730059 (+)
G1722607 NA non-coding upstream 186048 27715429 ~ 27719033 (+)
G1722626 NA non-coding upstream 192447 27712393 ~ 27712634 (+)
G1722756 NA non-coding downstream 79089 28002267 ~ 28023525 (+)
G1722784 NA non-coding downstream 159092 28082270 ~ 28082564 (+)
G1722799 NA non-coding downstream 195837 28119015 ~ 28119380 (+)
G1722834 NA non-coding downstream 264082 28187260 ~ 28187624 (+)
G1722842 NA non-coding downstream 277328 28200506 ~ 28200736 (+)
G1722079 NA other upstream 1083146 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 1573988 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 1863238 26038302 ~ 26041843 (+)
G1720853 NA other upstream 2268492 25636335 ~ 25636589 (+)
G1720836 NA other upstream 2292813 25611816 ~ 25612268 (+)
G1724234 LOC106609199 other downstream 1289641 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 1335082 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 1967108 29890286 ~ 29891957 (+)

Expression


Co-expression Network