LOC118942914


Basic Information

Item Value
gene id LOC118942914
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28254592 ~ 28257603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038564.1
GCTCCCTTCCTCTTAGTTGCCATCCATCTGCGCGCGCAATAGCGATCACGGAAAAACCTCTCCATCACTTACCGAGGTCTCGGTGATGATGGCGTCTTCCTCGTGTCTCGATATCGGGTCGATCGCTGTGTGTAGGGCGTCTCTGTGCTCCTCCAAATCCCCCGGGTTCCGCTGCTACCCACCCCAGCCAAATGACACCCCGCTGGGGCTACAGCAGAGGTCTCTCCCCGAACAGACGGCTCTACATCCACAGAGGTGTTCATGGAATGCATAGGTCtaattgggctcctgagtggcacagcggtcaaaggcactgcatctcagtgcttgaggcgtcactacagccacccaggttcgattccaggctgtatcacatctggccgtgattgggagtcctatagcaTCGTCCGGGGTAGACCTTCATTGtgaataggaatttgttcttaactgacttgcctagttaaataaaggttaaaaaaaatgcatC
>XR_005038563.1
GAGGCGGGTTAAAACTGGAGATAGGTTATATATAATACTGGCCAAGGCTATAAGTCAAACTGTAGGCTAGAACAACAGTTTTAGATTGTCTCTGCGTGCGCTCTCAGCTCAAAGGTGTGTTTTCCTGCGCACTGTAGCCTACCTTGTTAATGCCACAGTATTGTGCAGAAGAGGCTAGGGGTGATAGGCAGCAGAgcatagaaaatgtgcttctAATGTTGTCAAAAACTCAAATGTTCGTTCCTGTCCAATTCGCTTTCACGGTTCAAGAGATGGGCCTTTTACGTCGCAATTCTGTAACACAAGGAGCAAAGCGCAACTCGGAGGAACTTTTCTATTCCAAAGTTAGCCCATATGAGAGAATTTCCCTCACTGCTCTGAGAAGTTGGAGAGAAGGGGGTGCAAATGTGTCAAGTAACGGGATGTCTAAATGGAGTGACCGCATAAGTCAGCGTCTCTGTGCTCCTCCAAATCCCCCGGGTTCCGCTGCTACCCACCCCAGCCAAATGACACCCCGCTGGGGCTACAGCAGAGGTCTCTCCCCGAACAGACGGCTCTACATCCACAGAGGTGTTCATGGAATGCATAGGTCtaattgggctcctgagtggcacagcggtcaaaggcactgcatctcagtgcttgaggcgtcactacagccacccaggttcgattccaggctgtatcacatctggccgtgattgggagtcctatagcaTCGTCCGGGGTAGACCTTCATTGtgaataggaatttgttcttaactgacttgcctagttaaataaaggttaaaaaaaatgcatC
>TU1973749
GTTGTAACGACAACAGTAGAGTACCACGCCACAGCTCCCTTCCTCTTAGTTGCCATCCATCTGCGCGCGCAATAGCGATCACGGAAAAACCTCTCCATCACTTACCGAGGTCTCGGTGATGATGGCGTCTTCCTCGTGTCTCGATATCGGGTCGATCGCTGTGTGTAGGGGTAATTTGtgtgtgtcgctctctctctttctcttcttattatctcccctgtctctctctcaaagacGAGGTGAAATCCGTGCTCTGGTCATCCGGCGGCTTCACAGACAAAACCAACACGCAGCGGCAAGAACAATATACAAAAGCGTCTCTGTGCTCCTCCAAATCCCCCGGGTTCCGCTGCTACCCACCCCAGCCAAATGACACCCCGCTGGGGCTACAGCAGAGGTCTCTCCCCGAACAGACGGCTCTACATCCACAGGTCGGTTTGAAGAGCGTGTCTATCAAACAGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038564.1 False 487 mRNA 0.53 3 28254625 28257603
XR_005038563.1 False 802 mRNA 0.48 3 28254982 28257603
TU1973749 True 464 lncRNA 0.54 2 28254592 28257201

Neighbor

gene id symbol gene type direction distance location
LOC110500182 LOC106609326 coding upstream 300188 27937819 ~ 27954437 (+)
LOC110500181 LOC106609325 coding upstream 331447 27905081 ~ 27923178 (+)
LOC110500180 LOC106609324 coding upstream 351728 27890465 ~ 27902897 (+)
LOC110500177 LOC106576158 coding upstream 568665 27656376 ~ 27685960 (+)
LOC110500167 NA coding upstream 943016 27309199 ~ 27311609 (+)
LOC110501048 LOC106609163 coding downstream 53415 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 coding downstream 83820 28341423 ~ 28343734 (+)
utp20 utp20 coding downstream 94348 28351951 ~ 28376045 (+)
LOC110500185 LOC106609173 coding downstream 122219 28379822 ~ 28390596 (+)
LOC110500191 LOC106609184 coding downstream 367159 28624762 ~ 28787436 (+)
G1722863 NA non-coding upstream 11128 28243290 ~ 28243497 (+)
G1722858 NA non-coding upstream 18026 28236384 ~ 28236599 (+)
G1722851 NA non-coding upstream 28945 28225460 ~ 28225680 (+)
G1722842 NA non-coding upstream 53889 28200506 ~ 28200736 (+)
G1722834 NA non-coding upstream 67001 28187260 ~ 28187624 (+)
G1723558 NA non-coding downstream 8990 28266593 ~ 28266992 (+)
G1723566 NA non-coding downstream 16768 28274371 ~ 28274634 (+)
G1723568 NA non-coding downstream 18709 28276312 ~ 28276674 (+)
G1723600 NA non-coding downstream 82580 28340183 ~ 28345660 (+)
G1723608 NA non-coding downstream 146349 28403952 ~ 28406128 (+)
G1722079 NA other upstream 1432690 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 1923532 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 2212782 26038302 ~ 26041843 (+)
G1720853 NA other upstream 2618036 25636335 ~ 25636589 (+)
G1720836 NA other upstream 2642357 25611816 ~ 25612268 (+)
G1724234 LOC106609199 other downstream 955216 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 1000657 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 1632683 29890286 ~ 29891957 (+)

Expression


Co-expression Network