utp20 (utp20)


Basic Information

Item Value
gene id utp20
gene name utp20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28351951 ~ 28376045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957546.1
CCCATGATGCTTCATCCAATATGGCTGCGCCCCGGCATCAGGCATGTGTGTAAACACAGTTAGTCTATACATTGTTGTTTTTATACAAATTTGAAACGTggattacatatatttttttaacattcATCAGAAAAATAGACACGTCAAAAATGAAGATCAAATCCAAGTCGTCGTATCATAAATCTGAGAACACATTCAGGTTTCTCACGTTTGCTGAAAGGCTTGCCAATGTCAATATCGATGTCATCCATCGCATTGACAGAGCTGGGAGTTATGAGGAGGAGGTAGACACTTACTTTTCAGAAGGACTGACAAAATGGAGGGACCTGAATTTGACAGAGCATTTCACCACCTTCCTGAGGGAGGTGTCCAACAAGAGCCAGTCCTTCAACCTTCTGGTGTTCCATCAGAGGTCTATAGTGGAGAGCCTGAAGACTCACCTTAGTACCAAGAACAGCCTTGCCTGCCAGCCGCTACTGGACCTGGTGGTCCAGCTGGCTAGGGACCTCCAGATGGATTTCTACCCCCACTTCCCTGACTTCTTTGTGATCATCACCTCTCTCCTGGAGACCCAAGACACCGAGATACTGGAGTGGGCCTTCACCTGCCTCTCCTACCTCTACAAGTACCTCTGGAGACTCATGGTCAAGGACATGACCAAGATGTACAGCTTGTACAGTACACTGTTGGCACACAAGAAGGAACACATACGAAAGTTTGCGGCAGAGAGTTTTTCTTTTCTGATGAGAAAGGTGCCAGATCTTGACGCCCTTCTCAACCACATGTTCCTGGACCTGGAGGAGCACCCTGGGAAGGCAGAGGGGGTGGGACAGCTGCTGTTTGAGATGTGTAAAGGAGTCCGCAACATGTTCCACTCCTGCGCTGGCACGgcccTCCCAATTGCTCTGAGGAAGCTTGGACCAAGTGCTGACCATGAAGTATCTCTACCCTGGGATGCTGTCAGAGAGGCATTGGATCAAATGGCCCAGGCAGCAGCCAATCACGTAGAGAAAGAGCACTTTCTGGTTATGTGGGAGTCTCTACAGACGTGTGTGAGTGAGGCCCTACGGAACCTGAATAAGACTGATGTTGATGAGGAGGGTCAGGCCTCCGACCACTTGGAGCGTCTGCTCTTCATCCTCCATACCCTGGTGGGACACCGCAACGGAGCCAAGATCACCAAGCCAGACGCTGTCTGTCAGGCAGTTCATGAGTTGCTCCAGACCCCAGCCCTCCCAGGACCCTGCTGTAGACTCGTGCTCCAGATCATCTCCTCACTACTGCTGGGGGAGAATGTCTCCCTgcctaacacactcacacaggacACGGTCAAAAAGGTGTTCAGCAGTGGGATGGACCAGGACCTGATACTGGAGTTCACTAAGGAGATGTTCACCATGAAACAGTTTGAACAGtTCTTCCTGCCCAGTCTGCTACAGTACCTAGAGGGTTTTTTCTCCAGTCTAGACTCTGTGTCTCGTCACTCTGCCATGGAGGTGCTGGTCAGTCTCATCCTGGCTAAAGCCCCGCCCCCTACAGACGGCTCCATGGCCTTCGAgacctaccccctggtcttcaccGGAAAGAACCCCGGTAAGGAGCCAGGTGATGGGACAGAGAAGGTGTCAGTACCAGAGTTGATCCTCTCTCTGATCAGCCTACCGCAGGACCCGAACCAGACCATCACTGACCTGTCCCTGCCCTGGGCAGCCCTGGTCCTCCTGCCCCACCTCAGACCACTGGCAGCAGGGTGTGTCGTTCCCAGTCTGACAGCCCTCCTCAATCGCCTGCTACTGAATGTGGAGAGAGAAGCGCTGGGGAAAGGCGGTCTGTTTGTGGCCAGGCAGGCCCTCAGCTCCCTGCTCAGTCTGAATGGATCTGCTGAGGTTCTCTCCCTGGTGCCAGTGGAGCGGGTCAAGCCCATCATCCAgaaGTTCCCAACAGACATGTCGGCTCTGTTGCTAGGAGACCTCTACTACACCCGGCTGTCAGTCAACGGCTGCTCCGAGCACCTATCCCACGGTGCTCTGCTCGACCTGCACCAGATGCTGCACGTCAACCTATCCTCCAACAGCTCCAAAATCCGCTTGCTGACACTGAGGATTCTGACCCACTTTGAGGCTGACCTCAAACCGTCAGAGAGTGAGGACAGTGTGGAGGTCCAGCCTGTGTTTGCAGTGTGTTTTCAGGCTGAGTTGGTCCCTGCCTCCGTGCAGGACTACAGAGAGAAGCTGCTGCACCTCAGGAAGCTCAGACATGACCTGGTAGAGAGATCACTACCCCGGGGGACACAGGGGACCTTCCAACAGGTGCCTCTACGCTATCTTATGTCCATGCTGTTCGTCAACTTCAAACCCCTGTGGGACCCAGTCATTGAACTCATCGTgacccATGCCAGAGGAATGGACAACAAAGAATTCTGGAGGGTCTACCATGAGCAGCTGGAGTTGGTGGCAGGTCTTGCTGAAAAGGAGCTGCGTGAAGGCGACGATGATGCCGATGATGAAGATGGCGGCTCGGCGCTGCAAGGGGAGCCGGGCTGTGATGTCATCGAGAGCGGGGACGTGGGGGTGCTGTTCCTGCAGCGTCTGAAGATGACCTCTGAACCCAGCGAGAGGACAGACTTCACTAACTTCAGGGGCCTGCTGTGGAGGGCCATGGCTCTGGTCCCTGACCGCGTAGAACCACGCAGTAGGGAGCTCAGTCCACTGCTGCTACGATTCATCAGGAATGAGTTCTACCAAGCTGACCTGCTGGTGGCGCCTACTCAGGACCTGAGGAAGAGGAGCAGTCCTGCTGCCATGGAGGCTAGCAcggtgggagaggaagaggagaacagggaggaggaggaggatagaccAGAGAGGAAGATGCCACCAAAAAGAGCAGCAGCCAAGCAACTCATCGCTCACCTGAAGGTGTTTGCCAAGTTCACCAACCCTCGCTCTCTGTACCTGGAGAATAgcctcaatgagctgtatactcAGTTGCTGTGCCACCAGGACCAGCAGATTCAGAGGGCAGCATTGGAGTGTGTTCTGACCTACAAAGACCCCAACGTCCTCCCCTACAAGGAGAATCTGGAGAGGCTGCTGGATGACAAACACTTCAAGGATGAGATCGTTCACTTCAACATCTCAGAGGAGCAGGCCATGGTGGACGCCTCGCACAGGGCCCAGCTTATCCCGCTGCttatgagGGTTCTGTTTGGGCGGATGCGCAGTAAGACTGGCAGTAAGTTCCAGGGCAAGTCTGGCGCCATGCAGCGTTCCTCCGTCGTGCTGAGGTTCCTGGCAGGATGCCAGTCTGAGGAGCTGGGCATGTTCATTGACCTCCTGCTGGAGCCCGTCTGCCACCACGGACAGGgtcTGTGTCTAGCTGCAGTAGACAAAGCGATATCCGAGACGGACTTCTCTGCCGTCCTTCCTCTGGGTCGGCAGCACAGCCTGCTGAACATAGTCAACACAGTCATCAGTAAACTGGGCCACCTCATCAACACACACCTGCCCAGGGTGCTGCAGATCCTACTGTGTGTCACCGCCTCTGTCTCCACCATCCTCAAccagagagaacagTTAAAGGCCGGCTGTATCGCTCCTCTGAAGAACCTGAGGCGCCTGGGGGTCCTGCGGATCCAGGACTTCTTTGATGGCTTTGACTCGTACAGCTTCACCCCAGATGAGCTCGATGCCGTCTTCCAGGCTATCGTCTGGCCCCAGGTCTGCCGTCTGCCAACAGAGAGCCCCtactcccccacccccctcctcaaACTCATCCACGTCTGGAGCAAGAATCCCAGgtACTTCCCCCTCCTGGCCAAGCAGAAGTCTGGTCACCCGGAGTGTGACATCCTCCTCAACGTGTTCGCCCTGCTCTCCGCCAAGAATGTCTCCACTCAGACCGTTGCCATGGTGATGGACATCGCCGAGTCCTTGGTGACCACGAAGGACCTTCTGGTTTCGGAGGGTGAGGAGGCGGAGCTGAGCGTCAACGGCAGTGTGTTCCCCCAGCCACCAGAGGGAGCCTACATCTCTTTGGaGCATCTGAAACAGGGTGCCAGGCTACTCCAGCcccacatctccaccctgctacagTACCTCAGTGGCATCGTACGCAACTCTGTCAGACTCAAGAAGAAGAAGTTTAGATCCCAGGTGGCCAAGGAGCTCAACATCCTCTCAAAgctcAGCAGGTTTGTGAGTGATAAGGACCAGAGCTCAGTGCTCATCCGCCTGCTGCTGCCATACCTCCAGAAGGCCCGCAACCCACAGGAGACCGAGATTGACATCCTGTCTACAGTCCAGAACCTGCTAAGACAGTGTTCTAATCCCGCCTCCTTCCTCAAGCCTATCAGTCGACTGTTCTCCATCCTCCACAACAAGCTGCCCAGGCAGGCCCTCACCTCCGTCTTCCAGACTCTGGGAGACCTGGAAAGGGGACTGAAGTACATCACAGATACAGCTGCTAAGttGAATGCGTTTGACAGTCGTCACCTGGACGAGGTGTACTTCGACGTGCGTCTCACAGCCTTCCAGGAGGCCACCAGGAGGATCAACGACATGGACACGCTGGATATGAACTTCATCTACACCATGATGCACAACTGTTTCGCCTCCTTCGAGATTGGAGACATGTCCCTGGCTGACAACGCCACCttgtgtctgtctgctgttctTACACGTCTGGCTGCAGTGGGTCGGGGAGACGAGGACTACAAGGAGATAGTACAGTACACCATACTGGACGCAGTCAGGAAAGGACTGAGGAGCAAGACTGagAGTGTGCAGCATGACTACACCACAGTGCTGGCGTGTCTGGTGAAGACCTTCCCCACCCGTAGAGACTTCAGAGATCTGGTGCAGCTCACCGACTACAACGACCCCGAGTCGGACTTCTTTGAGCACATGAAGCACATCCAGATCCACCGCAGAGGTCGCGCTCTGAGGAAGTTCGCCAAGCAGCTGACGGAGGGTACGGTTGTGATGTCATCTCGTTCCCTCCAGACCTACATCATGCCCTACGCCATGACTGCCCTCTTCGACGAGAAGATGCTCAAGAATGAGGGTATGACGTCAGCCTCAGTAGAGGTGATAGGAGCGGTGTGTAGGAGACTGACCTGGTCTAAATATCTCTACTACCTTAAACACTTTGTTCACATACTGCAGACTGGACAGGCTGAACAGAAACTGGCTGTCAGTCTGTTGGTGACTGTTCTAGAGGCGTTCCACTTTGACCATGACACtctggagagagaaatggaggcaGCTAAGACCAGGGCCAAAGACGTTGTGAGCACCGTCGTTGATGAAGAAGTTGATGAGGAAGATGTGGCAGCTGTCGAATCAGAGGAGAGTGACACTGAGGAAGCCATGGAAACTGAAACAGACACGAAAACAACCACCATAGAAACGGCCACGGTTGTTACTATGGACACGGGCGCCGCTGAGACCGTTGAGGGTGTTGCTATGGAAACAACCGCCACAGAATCTATAGAGGAGCCTAAAGCTGTTCCGGCGAGGAAGCCGACCCCCTCCACTACTGCGGCTCCCAGTGGATTACCCCAGagcaaagcagagctggaggcccTGATCACCTCTATCCATGCCACTGTTCAAAATGCTGTCCTGCCCAGGCTACACAAGTGTCTGACCGCCAAGgtgaagcGAGATGAGGAGTGCAAGGCGGTAAAGTCTAAGGacgtgaaggaggaggaggtggccaGAGTTCCTATAGCCTTCGCCATGGTTAAACTGATGCAGACACTGCCCTCGACAGTCATGGACGTCAACCTGCCTGGCATCCTGATGAAGATGTGTGTGCTGCTGAGGAATCGTTTCCAGGAGATCAGAGACGTGGCTCGTAACACCCTGATTAAGATCGTCGAGACTCTGGGGGTCAAATACCTGCAGTACCTACTGAAGGAGATGAAGTCCATTCTGGTTAAGGGCTACCAGgTCCATGTGTTGACTTTCACGGTGTACCAACTTCTGTCTCACCTCGCCCCTAAACTGAAGCCTGGAGACTTGGACCACTGCATGGGCCTACTAATAGATatCTTCAACAGCGAGCTGTTTGGTGCAGTGGCTGAGGAGAAGGAGGTGAAGGGGATCGTCTCTAAGCTGATGGAGGCCCGCCACAGTAAGAGTATGGACTCCTATGAGTTCCTGGGCCAGTACTCTGGCAAGGACAGAGTCATACAACTCATACTGCCAATGAAAGATATCCTGGAGAACACAGCCAATCTGAAGACAGCCCGTCGCGCCCATGCAGTGTTGAAGAGGATAGTGTCAGGTCTACTGGTGAACCAGGCCATGGACCATCAGGCTGTACTACTGCTCAGCCATGGCCTGGTCTCAGAGAGTCTGCCCCTCGTCACCAAGCGGAACAAGGACAAAAAGCCCCAGGCGCCCCCGGACCCTCGCCtgcctcctcccagctgtctccTCTTGCCCCCCACCCCAAAGAGAGGAGGACTTAAAGCCCCCGTCAGTAGCCGCACCAACATGCACATCCTAGTGGACACTGGACTCCGGCTGCTCCATATGAGTCTGAAGAAGTCCAAGGTGAACTCCTCTGAGGCCTCTGCTCTTGAGATGCTGGATCCCTTCTTTGCTCTGCTACTAGACTGTCTCAACTCCATGCACGTCAAgGTGATAACAGAAGCTCTCTTAGCTTTTACGTTCCTGTTGCGGTTCTCCCTGCCAGCTGTAGAGCAGAATGCAGGCCAGCTCACCAAGCAGCTGTTTGTCCTGCTCAAAGACTACTCCAAGGCTGGCGCTGCCCGCGGAGAGAACTTCCAACTCGTCCAGAACTGCTTCAAGTCCATCACCATCCTAGTAAAGAACACGAAGACACACAAGATAACTGAGACGCAGCTGCAAGTGTTGCTGGGATACGCTGAGGAGGACATCTATGACCAGTCACGTCAGGCGACAGCCTTCGGCCTGCTAAAGGCCATCCTGTCCAGGAAGCTGGTAGTGCCAGAGATGGAGGAGCTGATGAAGAAAGTGGCCAAGCTGTCTGTTACCGGGCAGAACGGCATGATCAGGGTCCAGTGCAGACATATTTACCAGAAGTATATCCTGGATTATCCTCTGGGGAAGAAACTGAgatcacacctggacttcatcgtGGCCCAGCTCAGttaTGAGTTTGACACAGGAAGAGAGGCTGCTCTGGAGTTGATGGCCTATATCTTCCAAACCTTCCCTCAGAACCTGCTGCTGCAGCACAGTGGGTTGTTCTTCGTCCCTCTGGCACTGGCCATGGTGAACGATGACTCGGCTCGCTGTAAGAAGATGGCCGCTGTTGCCATCAAATCACTGCTGAGTCAACTGGACCAGCAACACCAGAACACCCTGTTCACCCTGGTCAACACTTGGCTGTCTGGAGACAAgGTGTCTCTGCGTCGTCTGGGGGCCCAGGTGTGCGGGCTGTTTGTGGAGGTAGAGGGGGTTCAGTTTGGCCGCCGTTTAGATGCCCTGCTGCCCCTCATCGAGAAAGAGATCCACCCCAACAACTTTGAAGACatTGAGGAGGAGCAGGATGAGAAGGCAGCAGACAGGCTGCTGTTCAGTTACCTCACCCTGGTCACCAAACTCACCAAGGACTGTAGCCTACTGGAGCTCAGCAAGCCTCAAGACACTCTCACTAACATCCTGGGTCATGTTGAGACCCACCTGCGTTACCCTCACTGTTGGGTGTGGTTGACTGCCTCTCAACTGTTTGGTCAGCTGTTTGCTGCCCACCGGCCAGACCAGCTGGTTgcccactggagagaggagaccacaGAGAAGGGCAGTGCCAAAAACACCACCACACCGGAACCTGTGGCGACCACGTTCCTTACAACCAACCTAGACAAGAAGATGAGAGAGTTGGTCCTGTCATTCTGTCACCAGCTCCAGTCGAAGTACCTGGACACGTCAACAGGAGAACAGGTGATCAAGAACCTGCTGTTCGTCGCCAAGGTGATCTACCTGATCTCACCCGAGTCTGAAATCCCACCTGCCCGGGaagtagaggaggggggggaggaaGAAGAGATGGAGAACGGAGGAGAGCTGGAGAACGATGGAGAGAAAGGTGATGAagaaaaggaggaagagaagcaggaggaagaggaggatgagaaggatGATCGTCCTCCATCCTTACTGTGGATGATGAAGAAGCTGTCTCTAATGGCTAAGAGGGAAGCTGCAGACACGCCCAAGATACCCCTCAAGAGAACATGTGTGTTTAAGTTCCTGGGGGCCATAGCTGTGGACCTGGGTAAAGACAGGCTGGGTCCTTACCTCACCACCATCATCGCCCCTCTCTACAGAGAACTGGACAGCACCTATGCAGACCAAGACCCCACCCTGAAAAACCTGTCCCAGGAGCTAATAGAGCTGTTGAAAAAGCAGGTGGGGCTACAGACCTTCTCCCTGGCCTTCTCAGCCGTTCAGAAGGATGCCTCACAGAGGAGGGCCAACCGCAAGAAACACAAGGCTATGCAGGCGGTGGCTAACCCTGACATCGCAGCCAGGAAGAAGCTGAAGAAACACAAGAACAAGATCGAGGCCAAGAAGAGGAAGATTGAGTTCCTGCGGCCTGGCTACAAAGCCAAGAGACAGAGGAACTCACTCAAGGACTTGGCGATGGTGAAATGATGTTATCCATTATATAGCAAGGATGGATGAGAAGACCAGGCAACCGTGTCCTGCTTAATGCAGGAGCTGACAGTCGCAAGCCACCTCTGTATGAATTCTCAGTCAAGGATTTGATATGTTTGTGCATTTAATgtaactttttttaaattaaaaataagTGCTACTTTCTTTGAACAGTA

Function

symbol description
utp20 Predicted to be part of 90S preribosome and small-subunit processome. Predicted to be active in nucleolus. Is expressed in immature eye; myotome; nervous system; pharyngeal arch; and somite. Orthologous to human UTP20 (UTP20 small subunit processome component).

NR:

description
small subunit processome component 20 homolog

GO: NA

KEGG:

id description
K14772 UTP20; U3 small nucleolar RNA-associated protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957546.1 True 8833 mRNA 0.54 58 28351951 28376045

Neighbor

gene id symbol gene type direction distance location
LOC110500183 LOC106609180 coding upstream 9103 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 coding upstream 16027 28311018 ~ 28335924 (+)
LOC118942914 NA coding upstream 94348 28254592 ~ 28257603 (+)
LOC110500182 LOC106609326 coding upstream 397514 27937819 ~ 27954437 (+)
LOC110500181 LOC106609325 coding upstream 428773 27905081 ~ 27923178 (+)
LOC110500185 LOC106609173 coding downstream 3777 28379822 ~ 28390596 (+)
LOC110500191 LOC106609184 coding downstream 248717 28624762 ~ 28787436 (+)
aebp2 LOC106609187 coding downstream 412887 28788932 ~ 28807707 (+)
LOC118943023 NA coding downstream 431775 28807820 ~ 28807949 (+)
LOC110501052 LOC106609188 coding downstream 487964 28864009 ~ 28940590 (+)
G1723600 NA non-coding upstream 6291 28340183 ~ 28345660 (+)
G1723568 NA non-coding upstream 75277 28276312 ~ 28276674 (+)
G1723566 NA non-coding upstream 77317 28274371 ~ 28274634 (+)
G1723558 NA non-coding upstream 84959 28266593 ~ 28266992 (+)
G1723608 NA non-coding downstream 27907 28403952 ~ 28406128 (+)
G1723764 NA non-coding downstream 103995 28480040 ~ 28480313 (+)
G1723765 NA non-coding downstream 104576 28480621 ~ 28484397 (+)
G1723790 NA non-coding downstream 144716 28520761 ~ 28521050 (+)
G1723791 NA non-coding downstream 145028 28521073 ~ 28521505 (+)
G1722079 NA other upstream 1530016 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2020858 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 2310108 26038302 ~ 26041843 (+)
G1724234 LOC106609199 other downstream 836774 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 882215 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 1514241 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 2205957 30582002 ~ 30590636 (+)
G1726222 NA other downstream 2229255 30605300 ~ 30611361 (+)

Expression


Co-expression Network