LOC118942915


Basic Information

Item Value
gene id LOC118942915
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28941181 ~ 28943195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038568.1
ACACGGTTATTCATGTAACCACCTATCAGATGAGAGGTTAGCTCTGTTTGCTCCGATTCCATCTGTCTgagctgggggtgggggggggctcatacacacacatgcgcacacacacaccaactgtaGACTGCCTCGTGCAATTACAAAGTCATGTGCAAGTGGAAGCTCACTTGCATTTCATTCCAAAGTGTGTCATAATACATCCTATTCAGAACAGAACCTTGGATTAAGAATAACATCATGGCATTTAGTAATTGACAAGGACGTGATAGTGGTCACATGCTCGTGTTGACATTTTTCAGAGTACTACTATTACCATAATTCCACCCTATCAGTGGACAGCAGCAACTGTACAATAGGCACCAAACATGGCAATAGGCACCAAACATGGGCAATTGGGCATTGAAAGCATTGAGCCCCCGTGGTTTAAACAACAGCAGGCACGGTTTGAAGCCCAACATCCTTCCTCATGTTTTAACTCTGTCCTGTGTGATGTTTTTTTCAGGCTATTACCAGATTCTGTCTGCGTCCTAAAATGGCTCCCTACTGACCTGGGCCCGtatggctttggtcaaaagtagtgcactatacagtataGCGAATAAGGTGCCATTGGGAATGAACaaaatgtctctctctttgtgggcATATGTCTGATTTACCACAATCGTCATCGGCTCACATATTAGCCACAACGAGAACCAAACGAGCTTTACACCTTCTTAAACGAGACACATGAGacttgttttatatatttatcttTAGCGGCACTTCACAAACGGAATAATTATTACTGTTTCTTCTCTCTTGTATCTTGCACTTAACACATGTAGCAATACCTATAGGACGGGGAAAACAGACGTGTGATTCACCAGTATTTGTGAAGTATTTCATTTTATTACTGGTTTATTGTTCCACTTTGTACAAAATATATGCTGTACAGATATAACAAATTAAAACGACATCAAAAGTCTTTTAGAtaaactttatttatttttactgtttttgtAATttagacactatactgtagctcCTTTTTGGCCAGAATTACTGAAAGTGCCTCTTGGTATAATGTATTACaaagtaaatatacagtatattgagaTTATTAGAAACTGTCACTAGCTGAACAATGTGGATGTTGTAATGTGAATACTGAATAACATGAGTTAAATGCTGtggtaattgtatgtgtggtcTCTTTGCCTCGACTTACATTTATTTTCTTCATCATCATCTATTTCATATAACTATGTCAACATGAAGTATGTAAATGCCTTTCAACTTCTCAGGTACGTCCTCAAGGTTACTGATACAttcaatatttgatttgatttatgccTTCCCGGTAAGCCAACAGTCATAGTTGATTAGgggtggcaggtggcctagttgttagagtgttgggccagtaactgaaagattgctggatcgaatccccgagctgagaagTTTTTAAAAATCGTTccgcctctgaacaaggcagttaacccactgttccccggtaggccatcattgtaaataagaatttgttcttaactgacttgcctagttaaattaattAATTTTTGGCAACATCATAGCATACTAGTGATAGTTTTGGCTTTTGAGCTTTAACTATTATGAATCATTAGTTCTAAAAGAGACATGAGGGGTGCCATAATGAAGTttgggaggggctgagtgcagGGAAAACGGTCACACGTGGCAGTATTGATAAAGGGAGGAACCGTTTAAGGCCCATATCTCTTAGCTCCCTGCCTAGCAATAAGGATGCAATGTGTAGCGATGAGGAGGAGACTCCGCCCAAGGTGGGGTATGTATACACTACCACGGGTGAGGAGGAGACTCCGCCCAAGGTGGGGTATGTATACACTACCACGGGTGAAACCATGtctttgtctaatgcagctgtattggCCCTCTGGgcagaataaacttggtttaaagCTTG
>TU1975115
GATGTGTGTGAGAACACGGTTATTCATGTAACCACCTATCAGATGAGAGGTTAGCTCTGTTTGCTCCGATTCCATCTGTCTgagctgggggtgggggggggctcatacacacacatgcgcacacacacaccaactgtaGACTGCCTCGTGCAATTACAAAGTCATGTGCAAGTGGAAGCTCACTTGCATTTCATTCCAAAGTGTGTCATAATACATCCTATTCAGAACAGAACCTTGGATTAAGAATAACATCATGGCATTTAGTAATTGACAAGGACGTGATAGTGGTCACATGCTCGTGTTGACATTTTTCAGAGTACTACTATTACCATAATTCCACCCTATCAGTGGACAGCAGCAACTGTACAATAGGCACCAAACATGGCAATAGGCACCAAACATGGGCAATTGGGCATTGAAAGCATTGAGCCCCCGTGGTTTAAACAACAGCAGGCACGGTTTGAAGCCCAACATCCTTCCTCATGTTTTAACTCTGTCCTGTGTGATGTTTTTTTCAGGCTATTACCAGATTCTGTCTGCGTCCTAAAATGGCTCCCTACTGACCTGGGCCCGtatggctttggtcaaaagtagtgcactatacagtataGCGAATAAGGTGCCATTGGGAATGAACaaaatgtctctctctttgtgggcATATGTCTGATTTACCACAATCGTCATCGGCTCACATATTAGCCACAACGAGAACCAAACGAGCTTTACACCTTCTTAAACGAGACACATGAGacttgttttatatatttatcttTAGCGGCACTTCACAAACGGAATAATTATTACTGTTTCTTCTCTCTTGTATCTTGCACTTAACACATGTAGCAATACCTATAGGACGGGGAAAACAGACGTGTGATTCACCAGTATTTGTGAAGTATTTCATTTTATTACTGGTTTATTGTTCCACTTTGTACAAAATATATGCTGTACAGATATAACAAATTAAAACGACATCAAAAGTCTTTTAGAtaaactttatttatttttactgtttttgtAATttagacactatactgtagctcCTTTTTGGCCAGAATTACTGAAAGTGCCTCTTGGTATAATGTATTACaaagtaaatatacagtatattgagaTTATTAGAAACTGTCACTAGCTGAACAATGTGGATGTTGTAATGTGAATACTGAATAACATGAGTTAAATGCTGtggtaattgtatgtgtggtcTCTTTGCCTCAAGGTTACTGATACAttcaatatttgatttgatttatgccTTCCCGGTAAGCCAACAGTCAtagttgttagagtgttgggccagtaactgaaagattgctggatcgaatccccgagctgagaagTTTTTAAAAATCGTTccgcctctgaacaaggcagttaacccactgttccccggtaggccatcattgtaaataagaatttgttcttaactgacttgcctagttaaattaattAATTTTTGGCAACATCATAGCATACTAGTGATAGTTTTGGCTTTTGAGCTTTAACTATTATGAATCATTAGTTCTAAAAGAGACATGAGGGGTGCCATAATGAAGTttgggaggggctgagtgcagGGAAAACGGTCACACGTGGCAGTATTGATAAAGGGAGGAACCGTTTAAGGCCCATATCTCTTAGCTCCCTGCCTAGCAATAAGGATGCAATGTGTAGCGATGAGGAGGAGACTCCGCCCAAGGTGGGGTATGTATACACTACCACGGGTGAAACCATGtctttgtctaatgcagctgtattggCCCTCTGGgcagaataaacttggtttaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038568.1 False 1954 mRNA 0.41 2 28941194 28943195
TU1975115 True 1796 lncRNA 0.40 4 28941181 28943191

Neighbor

gene id symbol gene type direction distance location
LOC110501052 LOC106609188 coding upstream 604 28864009 ~ 28940590 (+)
LOC118943023 NA coding upstream 133245 28807820 ~ 28807949 (+)
aebp2 LOC106609187 coding upstream 133487 28788932 ~ 28807707 (+)
LOC110500191 LOC106609184 coding upstream 153758 28624762 ~ 28787436 (+)
LOC110500185 LOC106609173 coding upstream 550598 28379822 ~ 28390596 (+)
LOC110501054 LOC106609189 coding downstream 34187 28977382 ~ 29040907 (+)
cog5 LOC106609192 coding downstream 137109 29080304 ~ 29168271 (+)
LOC110500199 LOC106609197 coding downstream 230404 29173599 ~ 29183951 (+)
LOC110500200 LOC106609198 coding downstream 245840 29189035 ~ 29194796 (+)
LOC110501056 LOC106576126 coding downstream 304722 29247917 ~ 29251909 (+)
G1724099 NA non-coding upstream 26915 28914061 ~ 28914279 (+)
G1724097 NA non-coding upstream 31208 28909774 ~ 28909986 (+)
G1724096 NA non-coding upstream 31437 28909458 ~ 28909757 (+)
G1724086 NA non-coding upstream 47452 28893526 ~ 28893742 (+)
G1724115 NA non-coding downstream 1793 28944988 ~ 28945273 (+)
G1724119 NA non-coding downstream 9067 28952262 ~ 28952549 (+)
G1724180 NA non-coding downstream 142811 29086006 ~ 29086320 (+)
G1724222 NA non-coding downstream 243517 29186712 ~ 29186948 (+)
G1724227 NA non-coding downstream 255858 29199053 ~ 29199443 (+)
LOC110500183 LOC106609180 other upstream 597460 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 616577 28311018 ~ 28335924 (+)
G1722079 NA other upstream 2119259 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2610101 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 2899351 26038302 ~ 26041843 (+)
G1724234 LOC106609199 other downstream 269624 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 315065 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 947091 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 1638807 30582002 ~ 30590636 (+)
G1726222 NA other downstream 1662105 30605300 ~ 30611361 (+)

Expression


Co-expression Network