LOC110500199 (LOC106609197)


Basic Information

Item Value
gene id LOC110500199
gene name LOC106609197
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29173599 ~ 29183951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577407.2
CACCAATGTAAAATTTAGTTGGCTGCCAACAAACCTCCGGAGACTGGGACTTTCACTGAAGATTTTACAGATaagactggagttgcccattCATTGGGATATTTGATAGTGACGAAGCAATGGAGGACGTCGATAGATGTGAGGAGGAGCTTATTGAGTACGCCATTCGAGAGAGTATTCGAGACGTATCAATAGACAGCATACCAACAGTCAGTGGTGACTATCTGAGGATAGTGACTGCCATCGAGCAAGGTGATGTGTGTACCCTGCAGGAGCTGTCTGGGTTGCAGGCTTTCACAGAGAGGGACAGCAGAGGGTGGCTTCCCCTACACAGAGCCGCTGTGCAGTCCCAGGGAGAGGTCTTGGATCAGGTCCTGCTGGCTTCCTGTGATGTGACTGTGGATGATGTGACTGCAGACGGTGACACAGCGTTGATTCTGGCTGCTCAGGAGGGTCTGCTGGAGAACGTCAGGACTCTACTGCAGCATGGAGCGTCTCCACACAAAACCAACAGCCTGAACGAGTCCCCACTGCTGctcgCGGTGAGACAGGGATCATATGACATGGTGTCCACTCTGATCATTTGTGGGGCCTTCGTGGAACAGGTGTGTCTGAAGAAGTGGATGGCCATTCACGAGGCAGCCAAGGTGGGCTGCAGTGCCATCCTGGTGCTTCTGCTGAGACATGGGGCCAAGGTGACAGCTGTAGATGGGCACAATGTCACCCCGCTGGGCATCGCAGCAGAGTACGCCCACGTGGAGGTCCTGGATATACTCATAAAGAACGGTGGCGACGTGAACGCCCAGGCGTATAACGGAGACAGTGTTCTGTACGATGCAGCCGGCTCAGGGAACCTGGACTGCATATACCTCCTCCTGCAAGCTGGAGCCAACCCTAACATAGCCAGTCTGGCCTGCCAGCTGCCCATACACAGAGCTGCCTATGAGGGACACATCCTTGCTCTGAGGACCTTCATCCCCATCACAACTAAGAGAGCCATCCGTCTGTCTGGCCAGAGCCCAGTCCACTCGGCAGCAGATGGAGGCCATGTTGACTGTCTGGAGCTGCTCATAGAGAAAGGCTTCGATGTCAACGCTCAGCTGGACACACACATCTCAGAGAACTACGGGGACATGAGGCGGAGTCCGCTCTACTTCGCCGTATCCAACAGTGATCTCACCTGCACAGAGATGCTGCTGGCTGCCGGCGCCAAAACTGACCTGGACCCGTTACGCTGCTTCCTGGTGGCTGTACGCGCTGGGAGGTATGAGCTGGTGCATCTGCTATTGTCCAGGGGTGCCGAGGTCAACTGCTACTTCAGAATGATCAGTGATACACTGTTTCCCACCGCGTTGCAGTACTGTCTCAGAGATCACATGATTCTGCGTCTGCTGCTCAACAACGGCTACGACGTAGACAAGTGCTTCATGTGTAACCATGGCAACGGGCAGGATATGGACTGCGACTCCTGGGTCGACTACCGAAATAACCATAGAAGAACTTTATTTTATAACCAGGACTGCAGAGCTCCGTTCTGTGAAATCATCTCCCTGTCGTCGGTGGTCAACCTGGCGGGGAGTGTGGTACGGATGCTTCTGGACTACATCAGACACCCACGTATCTGCCCCAACCTCCTACGGGTCCTGGAGAAACAGAAAGAGTGGCCAGACATCTGTGACATTCTGGACAACCCGCGGTCCCTGCAGCACCAGTGTCGTTTGGTCATTAGGAGACAGATGACTCCTAGAAGACTGAATGACCCTCAGGTCATGGCTGCCGTACCGTTCCCCCCGTCACTCAAACACTACCTCACCTACAGGGAGAACGACGAGTATGGTGGGTTGGCAGCCACACACTCATAAGAGGACTATATCAATGAAAACATATTTAGAAGAAAAAATGATCTTGTTCTGTACATAACTGATCTATCACATAATGCTTTAGCTCATATACTTATGCTTATATGAAGTATGGCAAGTgtacttgttgtgtaatgtttgtaATAACTACATTTATTGTCACACTGATATATGCTCTCTGAATAGTCCTTACCATAGTACATCTACTTCTACTAGACTGCATACATTAGACAGCACAGCTGTGCATCATGGTACAGTGCATGTAGTGTGATCTACTCCTCAAGATCTCCCCATGGGAAAAGCAGGTCAGGACTAAAAATATCTCTCAGAGCTCATTCAGTTTATACATAGAGCTAAACACTCACTGGACACTGGTCTGAATGACTCTGCTGCAATGGACTCTTGACTTTTACAGTGACCCTGACACCTACCTGACTCATTAGACCAGGGCTTAAATCTAGAGAGATCTAGACATCCATATTATACCCTCGAGGTTCTGGGAGTTAGTTGAGGAGCTCTGGATCTGAGACTGTGTTGTCActagccctgtttatacctggtgctaacatggattatttgtcctgatcttgtccacattctgattgtgcccacatttgtaGACATGTGTAGACGATTAAAAGATGCATTGTGATCCGATTGTGATCAGATTTCCCTGACAACCTCCGGAGGTAGTCAGGCGTGCAAGTGTAGACagatctggacagtgaaacaatttaaatcatcattatccAACACTCTAAAATCCTTGACAAGTGACTCAATATGAGTCTTAAAATAAGTAAATAcatattattttgaaagaatGTCTGAAAATGTGAATATTGACAAGATCAGGACTGGATGCATGTTTGAACCAGGTATAAACAAGGCTACGGAGGCCTGTTGGGTGTACTACAAAGCagaatcaatgagttagccagctaactttgataaacaaccagaaataactatACATTTTCGGGTTTATTATGAAAGCTTAACttagatactgtatgtgttttagGAAGTTGAATCAATTAGACCATTCCAAGCGTATCTTTCTGAAACAAATAAGaagttatttcagaatatttaggagttagctggctaactcaatGATCCTGCTGTGTAGTGCAACCCTCAGCTCAACTCTCCCTGGCACACAGAGAGTGTATGAGCCAGATCTCGTAACATTCCCCAAATGCATGTTAGGATTTTGGCCGTTTTCCCAAAGCAAAGTCGAGTAACCCTAAAATACCATTTGGTGGTAATGTTACAATCAGCATCCACACACATGACTATAGTCCTATGCAGTGCCTGGTATCCTCCACTCCAACCAAGCCTTAGGCCTTTACAGTTGCTGTATTCAGAAATCATAgcgtttatttatttaactaggcaagtcagttaataaaaagttcttattttcaatgatggcctaggaacagtgggttaaactgccttgttcaggtgcagaatgacatatttttcacctttcacctcatcagggatttgatcttgcaaccttgcggttactagtccaacgcgctaaccactaggctatctgccgccccagTGAAATGTTTCAAGTGAAGAACACCCCAGGTAACTCACTGAACCAAACGtgggttctgttgttgtgaagGCACAGCTAGTGGAGGGTAGACAAGAGTAGCATGGTCCAATGTAGAATTACGTTGAGAGAGTTCTAGCGTTGCCAGACTATTGTTGTTATCTGAACAGCAGCATTCCTGCCCTGTCAACACCAGCCTGCCGCTCAGAGACACAATGGAGTGGAAACTGTGTTCCTACCCACTAGTCATACAATACACCAGGGATCTCCAACACTGTTTCTGGAGAGCTGACCTCTTGTAGGCTTTTGCTCTAATCCCAGTTTTATCTAtcctgattcagtttatcaaccagctaattattagaatcacgTGAGCTAGATTTGTTATTTGGTAtgtggggtccacacaaaacatgaaaacttgacataatacagaacattaatacacagctcaaagacagaactacataaaaaaaaaattaaaaggcaCACATACTGAAGCCTAGATATCATAACATACACACAAATATCTACGTCTACGTCAAATAAGGGAgaagtgttgctttatctgttttttgaaactaAGTTTGccgttcatttgagcaatatgagatagAAAGGAGTTCCGTGCAATAACGGTTCTATATAAgaactttcttgaatttgttatggatttggggactgtgaaaagacccatgtgtgtaagttgactacgcAAACAATTTTGAATTTTCAACACtgtaatgtttcttataaaaataagtgatgcagtcagtctctcttcatctcttagccaagagagactggcatacatactatttatattagccctctgattacaatgaagagcaagatgtgccactctgttctgggccagctacagcttaactaggtcttttgCAGCAtttgaccacatgactggacaataatcaagataagacaaaactagagtctgcaggacttgctttttggagtgtggtgtcaaaaaagcagagcagcactttattatggacagacctctccccatctttacaaccattgaatctatatgttttgaccatgacagtttacaatctaaggtaacaccaagtaatttagtctcctcaacttgttcaacagccacacaatTCATTACCAGATCCAGCTGAGGTCTAGAGCTTAGGGattgatttgtaccaaatacaatgctcttagttttaaagatgttcaggaccagtttattactggccacccattccaaaactgactgcaactcctTGTTAAGGGTTtaagtgacttcattagctgtggttgctgacacgtatatggttgaatcatcagcatatacggacacacatgctttgtttaatgtcaGTGGCAGGCCATgggtaaaaatagaaaacagtagagggCCTaaagagctgccctgcggtacaccacaccctacatgtttgacattagagagatttccattaaagaaaaccttCTGAGTTCTATTCGATAGATAGCTCGGAATAAAACATATGTCAGGGGTTGAAAAGCCATTCAACcattcatcagtcatttgtgtcagtgcagtacatgttgagtgctcTTCTCTatatgctgaaagtctgttgtcaaatTTGTTTACTAAGAAATAGccttgtatttggtcaaacaccattttttcacACTGTTTGCTAAGAGCTGTCATCAAGCTGATacgtctgctgttagaaccagtaaaggctgcgttaccactcttgggtagcagaatgaACTTGGCTTTCCTTCAGTCCTGaggacaaacaccttcctctagacTCAGAtgaaagatatgacagataggagtggcgaTAGAGTCAGCTATCATCCTCAGGAGCTTTCCATCTatgttgtcaatgccaggaggtttgtcattttaaaaaaaaataacattttccacctctccca

Function

NR:

description
ankyrin repeat and SOCS box protein 15-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10337 ASB15; ankyrin repeat and SOCS box protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577407.2 True 5346 mRNA 0.45 13 29173599 29183951

Neighbor

gene id symbol gene type direction distance location
cog5 LOC106609192 coding upstream 5328 29080304 ~ 29168271 (+)
LOC110501054 LOC106609189 coding upstream 132692 28977382 ~ 29040907 (+)
LOC118942915 NA coding upstream 230404 28941181 ~ 28943195 (+)
LOC110501052 LOC106609188 coding upstream 233009 28864009 ~ 28940590 (+)
LOC118943023 NA coding upstream 365650 28807820 ~ 28807949 (+)
LOC110500200 LOC106609198 coding downstream 5084 29189035 ~ 29194796 (+)
LOC110501056 LOC106576126 coding downstream 63966 29247917 ~ 29251909 (+)
LOC118942782 NA coding downstream 440331 29624282 ~ 29630010 (+)
LOC110500208 LOC106609208 coding downstream 796933 29980884 ~ 29993056 (+)
LOC110500209 LOC106609209 coding downstream 809494 29993445 ~ 30002054 (+)
G1724180 NA non-coding upstream 87279 29086006 ~ 29086320 (+)
G1724119 NA non-coding upstream 221050 28952262 ~ 28952549 (+)
G1724115 NA non-coding upstream 228326 28944988 ~ 28945273 (+)
G1724222 NA non-coding downstream 2761 29186712 ~ 29186948 (+)
G1724227 NA non-coding downstream 15102 29199053 ~ 29199443 (+)
G1724229 NA non-coding downstream 16620 29200571 ~ 29200813 (+)
G1724231 LOC106609199 non-coding downstream 22911 29206862 ~ 29207187 (+)
G1724234 LOC106609199 non-coding downstream 25218 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 829865 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 848982 28311018 ~ 28335924 (+)
G1722079 NA other upstream 2351664 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2842506 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 3131756 26038302 ~ 26041843 (+)
G1724262 LOC106609200 other downstream 74309 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 706335 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 1398051 30582002 ~ 30590636 (+)
G1726222 NA other downstream 1421349 30605300 ~ 30611361 (+)

Expression


Co-expression Network