LOC110500200 (LOC106609198)


Basic Information

Item Value
gene id LOC110500200
gene name LOC106609198
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29189035 ~ 29194796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577409.2
catactaaacAGAGTGTCAcatatttacatacagaataatatgaatttCTCTGACACCACTTTGACCTAAagtccatcctccatcctcctcactcaCAGTAGCCCCTCTCTGTGTGTCATTACACAATTCAATACACTTTATTATCCCCGAGGGAAAAATGCATTGACCACACAATTCTGCTGTACATAGAAATAGATCCACAGAAAGGTATTGTAGGCTCCACATAATTGCCCATTGCCTGAAACAGTATGCACACATCATGCATCTACACACGTCAAACCCATTTTGGATATCTGGAATTAGCCACCTACAACAACAAGCCCTTTACCCAAAGAGAGTTATCACCCTAGCCTGGCTGACGCAACCCACGTGACCCAGAGCAGGGAGAGCTGTGACACGCTAGTCTGCAAAGGAGGCCGTTTGTCAATGCAGTATTCGCTCAGAAATTGAGCGAGGGATTTGATTGGTTCGCTCAAATGATGTTTTTTTCCTCTGTGATTGAGACCTCTTTGTTTGGATTGGAAAACCCAACCGTTGTAATGGGAGGGGGATGGCGCTCTGGGCCTGTGTGTGGCTGTGCCTATGGTTGTTTGAGTGAGAATGACACTGAGATGAGCCAACCAGTAAAAGCACAGCCCCCTTCATTATCGGCGCATTGTGCCCACAACTTCAAAGAGCCATTCCTGACTTTGAAGTCAGGAGGACTTTGAGAGTTAGGTGTTAGCCAGACTGTTATCACTCAGGCTCATTAGAAGATTTAGACTGACAGAACGGAAGAGCTTCTATAAAGCTCCGTAGATAAACAGACCGTTTTTGTTCCCCAACTAAGTACAAATTTTCATTCAGTCAGACAGAGTGGTGATGTATAAAGAGGTCTGATTAAAAGCCCAAAGCCAGCAGTGtatagcagagagagatagagaacatCCCCACTGCCTAGTCTGCCAGCTCTCAGAAAAGCTCCTCCACTCTACCCTGACAAGCCTAAAATGATAACATAACCCTCTTTTAAATAAGCCCACGGTCGCAATCGTCTATTGTTATTCCCAGTATTTCAGGAACCATTGTACTAAATGAAAGCCCACTAAAAGATACAGCTCTACTTCCACATTATTGCTATATTAGTCTGCTCCATAGAAACACGTTACCATAGAAACCATGTTATCTTTAGTAGTTAATCCCACGGGATGGCCAGTGGTGTCACACAGCAATGTTGAGTGGTGATAGACACTTGAAAAGTGACTATTTCAATACGGCCTACTTCACGCTGTCGCCTATCAGATAAACAACCACTCTGGTCCTTACTAGAGGAAtatctgaaatgacaccctattccttatgcagTGCACCACATTTGAACAGAGCCACCTAGGGAAAAGTGTACTATTTGAGACAACAATTATGTCATGGTGTGTGTCTCTGAGTCTGAATGTCTTTCTATGTCTGTGGGTTTCTCTGTGTGTGATGTGATGTCCCTCTGTGTGTAAATACGTGTTTAATGTTGCTATGTGTCTCTGTATGTTGGCCGCTGTGTTTCTGCTTCTTGTTATGTGCCTCTAtgactcgctctctgtctctcttgggtCCGGTTGGGCTTTTTTTTGGCCACGAACAATGTGGCCGCTGCTGGGATCCGCTGACAGGCCTGACCAGGGCCGCTCTGCTCTCTGAGCTCACATGCTTTTTGTGGCTCTAGTCTATCTCTCTGAGCAGCGCCTCCCAAAAAAAGGACTGTGCATCATGGTCCAACGCTTTGTTGCACTCCACTGATCCCCCTCTTAAGGCCTCTGCAGCAGCTGGAGAGattagaagagaggagaacaggacacaaactcacacacacactcaacacacacaccaccgacACAGACACCCCAGCTTGGCCCCTTGCACACACCACTGGTACTGTTCTCACTGAAGCAGTAGTGGACAAACAGATCAGGCCGAGACTGAACTTGACAGGACCCACACCTCCAGAAAGACTCCATTCTGACCGGAAACCTATCCCAGAAAGATCCCACCCTGATCGGACTCGTACGGCACGCATAGCCCCATCTACCTGGAGCCCAGCCCAGAGGCCAACATTTTCAGCAATGAACAGTTTTGGGTACCGTCGGGAGTTGAGTAAGTATGAGGATGTGGATGAGGATGAACTACTGGCTTCTCTCAGCCCAGAGGAGCTagcagagctggagatggagctgGCAGACATAGACCCTGATGCCAACGTGCCCATCGgcctgagacagagagaccagacggAGAAGACCCCCACTGGCACCTTCAGTAGAGACTCTCTGTTGAAGTACTGGGAGAAGGAGACCAAGAGGATactggaggatgagagaggggaagCCAGCAGCCCCAAACAGgatgacgatgatgatgcCGAAAAGAGTGAGGAAGAATGCGTGACAGAAACCAACAGCGAAGCAGAGGAGAAGGATGACGAGAACAAGAAAGAAAATAAAGAttatgaagaggaagaggaggaagaagaagaggaggaggaggagagtgaggaagaggaagctgaaacagaggatgaggaggatgaagaggaggatgaagaggagccAGAAGAGAAGAGGCCTAAAGCAGCGACCCCAAAGGATTCTGGTCCTCCATCACCGCTGTCAGTTGCCATCTCCTCCCCTAGCCTCCTGAGACCCCCAAGGGTGGAGCCTATGAGACTAACCCCGCCCCCACCTCCACTTGACCCCAACGCCGACGGTAACCCAATAGTTGTCGACGAGGCCCTGGAAAGAGTCCTTAATAACGACCCTGAGCTCAAAGAGATCAACCTCAACAACATTGAGGACATCTCACAGGAAACTCTAATCCAGTTTGCTGAGGCACTGCGCTCCAACACACACGTGCGTGTCTTTAGCCTGGCCAACACGCATGCCGACGACCCCGTGGCGCTGGCCATTGCCAAGACGCTGTGCGAAAACACCTCCATCATCAGCCTGAACATCGAGTCCAACTATGTGACAGGGAAAGGGGTTCTGGCCATGGTCCAGGCTCTGCCTAGCAATAGCACCTTGACTGAGCTACGCTTCCACAACCAGAGACACATGTGTGGAGGACAGgtggagatggagatggtgaagGTTCTGAGGGAGAACCACACCCTGATCAAGCTGGGTTACCAGTTCCACCTGCCAGGCCCCCGGATGAGCATGACAGGCATCCTGACCCGTAACATGGACCGTCAGAGACAGAAACGCCTGCAGGAGCAGAGACAGAACCAGCAGGCGGGGCCAGAGGGGGCCGTTAACCCCCGTACGACCGCTCTCTTGAAGGCCACTCCGGGTTCTTCGCCCTATGGTTCCCCGCGGGTGTCTCCTTGGCAATCCCCCAAACTCCCCAAGAAACAGACCCCTCCTGCTCCCCCGccgcctcctccacctcctcccccaccccccccactgcCCTGCCAGCCCCCGGCAGAGAAGAAGAAGCCGACTAGGAAGATAGCGGAGGTGATCAGGCTCCACGAGGAGGTCGTTAAGAAgcaagggaaagggaaggggaagAAGGGGAAGAAAGGATTGAAAGAGACCAACAGTATCTTGAAGGAGCTGAAGAACGCTCTGCGGCCAGTGGCAGAGAACAGAGACCAGGAGCACAGCAGGCCACCCACTCCACTGCGCTCCTCACACGACCAGCTCATGGACTCCATCCGCAACGCTAGTGTCCGCTCCCTCAGAAaggTGGAAGTTCCACAGAGGAAGTTTGTCTTTGTCCCTGATGAAGAGACTAGCTGATCTGAAGACACAGGGAACACCCTGAGACTACTGAGGACA

Function

NR:

description
leiomodin-2-like

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577409.2 True 3810 mRNA 0.51 4 29189035 29194796

Neighbor

gene id symbol gene type direction distance location
LOC110500199 LOC106609197 coding upstream 5084 29173599 ~ 29183951 (+)
cog5 LOC106609192 coding upstream 20764 29080304 ~ 29168271 (+)
LOC110501054 LOC106609189 coding upstream 148128 28977382 ~ 29040907 (+)
LOC118942915 NA coding upstream 245840 28941181 ~ 28943195 (+)
LOC110501052 LOC106609188 coding upstream 248445 28864009 ~ 28940590 (+)
LOC110501056 LOC106576126 coding downstream 53121 29247917 ~ 29251909 (+)
LOC118942782 NA coding downstream 429486 29624282 ~ 29630010 (+)
LOC110500208 LOC106609208 coding downstream 786088 29980884 ~ 29993056 (+)
LOC110500209 LOC106609209 coding downstream 798649 29993445 ~ 30002054 (+)
LOC110500210 LOC106609211 coding downstream 807608 30002404 ~ 30009586 (+)
G1724222 NA non-coding upstream 2087 29186712 ~ 29186948 (+)
G1724180 NA non-coding upstream 102715 29086006 ~ 29086320 (+)
G1724119 NA non-coding upstream 236486 28952262 ~ 28952549 (+)
G1724115 NA non-coding upstream 243762 28944988 ~ 28945273 (+)
G1724227 NA non-coding downstream 4257 29199053 ~ 29199443 (+)
G1724229 NA non-coding downstream 5775 29200571 ~ 29200813 (+)
G1724231 LOC106609199 non-coding downstream 12066 29206862 ~ 29207187 (+)
G1724234 LOC106609199 non-coding downstream 14373 29209169 ~ 29214283 (+)
G1724246 NA non-coding downstream 36935 29231731 ~ 29232065 (+)
LOC110500183 LOC106609180 other upstream 845301 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 864418 28311018 ~ 28335924 (+)
G1722079 NA other upstream 2367100 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2857942 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 3147192 26038302 ~ 26041843 (+)
G1724262 LOC106609200 other downstream 63464 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 695490 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 1387206 30582002 ~ 30590636 (+)
G1726222 NA other downstream 1410504 30605300 ~ 30611361 (+)

Expression


Co-expression Network