LOC110501056 (LOC106576126)


Basic Information

Item Value
gene id LOC110501056
gene name LOC106576126
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29247917 ~ 29251909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110501056
ATGACcacccctcctttctctcagttctccacccctcctctctccagaacTACTGTCCCTTATCTTCCCAAAACAACAAtcgctcctcttccctcttccacCCGTCCCTTACCCAAAACCTCCACTCCTCGTCCACCCCaaacctctccccatcctctccaccaCACTGCTCCCCCTCTGTTTGACTGTGAGCCCTTCATAGTGACCCAGAACATCCCAGACCTAGTGTGTAACAGGTACAATATCTCCCTGTACACCTCCCCCTACAGAGGTGTGGCCACACCTGCCAAGGTAAGAAATCAGTTCCTGTCTCTGTTCTATACTGACCGACTGGGCCTCTACCCCCAAGTGAATCTGCTATCCAGGCAGCAGTTCTACGGAGGCATCCCCCAGAGAGGAAACCTTAGGGCCAGCTTGGCCAAAGCCCGCGCTGACATTGACTACTATATCCCCTCCAAGACAGCCGGTGTCCTGGCTGTGATCGACTGGGAGGACTGGCGCCCCCTGTGGGCCAGGAACTGGGGCTCCAAGTGGATCTACAGAACCCTTTCAGTGACCCATGCCCGCCAGAGGGACCGCTCCCTCACAGCATGGCGGGCCACGGCTACAGCCAAGAAGCAGTTCCAGGCAGAAACCCGCAGCTACATGGCAGAGACTCTGTCCTTGGGTAGCCGGCTCAGGCCCAACTACCAGTGGGGATTCTACCTGTTCCCCAACTGTTATAACCATGGATGGATGGAGCCAGGATACACAGGGAGATGTACCAAGGATGTGATGGGGCAGAACGATGAGCTGCTCTGGCTGTGGGAGGCTAGTTCTGCACTATACCCATCTATATACCTGCAGGCGTCTCTAAGGGACAGGCATAGCGCAACCCTGATGGTAAGGAACTGAGTCCAGGAGGCGCTGAGGTTGTCTGCCCTGCCCGCCAAGCCCCTCCCTAACCCTTCTCTGCGTTAACTGTGTGATGGTCTCCAGGGCGATCTGGGACCATCAAGGGAGAGTGCTGCTGTGGAGGCCTCAGGAGCCATTCTGTGGGGGGCCAGTGCCAACTACGATGACAAgGCGTCTTGTGAAGCTCTTTCCTTGTACCTCACCACCACGCTCAACCCCTACGTCAACAACGAGACGGCAACTTCCTGTGCCAGGGGAATGGCCGCTGCGTACGGAAGCACTACGAGTCGGACCACTACCTCCACCTGTCTTCAGGGAACTTCCGTATCCTGCGGGCCAGGGGCACGTACATGGTCCCTGGGACTCCCAGTCTGGCTGACCTGACTCTCTTCTCCAGGAGTTTCACCTGTCAATGCTATGCAGGATGGACATGTTCCCCCAAGCTGCCCATACACCTGTCTAAAGCACTGGCGTTTAGACTGAAGCATCAGGGTCTGTCTGACAAAACTAAGACACTGAATAAAGTGATCGCTGATATGGAACAATCGACCATTAAAAGAgaacttgaaaaaaaaaaaaacacaaacactgATGGATGGATCAACTGGACTGTCCTGTGTGACATACACAACAAGGTGGCACAAGTCTCTGGTTTGACCTTCATaataatactgtaataataatCAGAGGTAAGTACTTGAACGGCTCATGCAGATGATGGTTTCGGGTGATAT
>TU1975326
GCTCTTTCCTTGTACCTCACCACCACGCTCAACCCCTACGTCAACAACGAGACGGCAACTTCCTGTGCCAGGGGAATGGCCGCTGCGTACGGAAGCACTACGAGTCGGACCACTACCTCCACCTGTCTTCAGGGAACTTCCGTATCCTGCGGGCCAGGGGCACGTACATGGTCCCTGGGACTCCCAGTCTGGCTGACCTGACTCTCTTC

Function

NR:

description
PREDICTED: hyaluronidase PH-20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110501056 False 1628 mRNA 0.60 5 29247917 29251909
TU1975326 True 209 lncRNA 0.60 1 29251359 29251567

Neighbor

gene id symbol gene type direction distance location
LOC110500200 LOC106609198 coding upstream 53121 29189035 ~ 29194796 (+)
LOC110500199 LOC106609197 coding upstream 63966 29173599 ~ 29183951 (+)
cog5 LOC106609192 coding upstream 79646 29080304 ~ 29168271 (+)
LOC110501054 LOC106609189 coding upstream 207010 28977382 ~ 29040907 (+)
LOC118942915 NA coding upstream 304722 28941181 ~ 28943195 (+)
LOC118942782 NA coding downstream 372373 29624282 ~ 29630010 (+)
LOC110500208 LOC106609208 coding downstream 728975 29980884 ~ 29993056 (+)
LOC110500209 LOC106609209 coding downstream 741536 29993445 ~ 30002054 (+)
LOC110500210 LOC106609211 coding downstream 750495 30002404 ~ 30009586 (+)
cin cin coding downstream 821538 30073447 ~ 30075203 (+)
G1724255 NA non-coding upstream 852 29246850 ~ 29247065 (+)
G1724252 NA non-coding upstream 2413 29245222 ~ 29245504 (+)
G1724246 NA non-coding upstream 15852 29231731 ~ 29232065 (+)
G1724234 LOC106609199 non-coding upstream 33634 29209169 ~ 29214283 (+)
G1724231 LOC106609199 non-coding upstream 40730 29206862 ~ 29207187 (+)
G1724260 NA non-coding downstream 582 29252491 ~ 29252829 (+)
G1724261 NA non-coding downstream 1430 29253339 ~ 29254834 (+)
G1724262 LOC106609200 non-coding downstream 4869 29256778 ~ 29259929 (+)
G1724841 NA non-coding downstream 155751 29407660 ~ 29407860 (+)
G1724851 NA non-coding downstream 163162 29415071 ~ 29415398 (+)
LOC110500183 LOC106609180 other upstream 904183 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 923300 28311018 ~ 28335924 (+)
G1722079 NA other upstream 2425982 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2916824 26324744 ~ 26333964 (+)
G1725312 LOC106576088 other downstream 638377 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 1330093 30582002 ~ 30590636 (+)
G1726222 NA other downstream 1353391 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 1629934 30881776 ~ 30889293 (+)

Expression


Co-expression Network