LOC110500209 (LOC106609209)


Basic Information

Item Value
gene id LOC110500209
gene name LOC106609209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29993445 ~ 30002054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577425.2
CGCAATCTCTAGATGGTTGGTTGTCATGGATACCTGGGTCACATGCGTGGGTTTCCCGAAGCCAGCAGCAAAATGAtgcgagctagctagctagcattgttACTGCCATTTTCATTCAGATTTCATCAAAAGGCGGTAGCTAAGTTAGCAAGCTATAGCTAGCTACAGATGAACATACATTGAGAATGGGTATAACGCCAACAACATTTGTTGCAAAAGGCTGTGTTTGGGAACGTATTATTCAAGTGAGCTGTCAACCCTTACAAGCCTGAGCTggaatatcatttttttttagatTCAGAAAATAGCCACCGGTGTTTGTATTATTTGCCTGACTCTTCAAAGACCGATTAGAAATGAGTATTGAAATCCCAGACGGATTGACGGAGCTGTTGCAAAGCTTTACAGTGGAAGTGTTGAGGAATCAGCCAGGAGACCTTCTGGACTTTGCCTTGCAGTATTTCATCCAACTGAAGGAGAATCAGAGAGGATCCGCCTTTGACAATGCCCGAGATTCGGCTAACGGTCGACCTGGCGATAATGTTAGCAGTGGAAGATCGGTCAATTTTGCCGAGGAGACAATGCAACTTGATTCggaagatgatgatgaggaggaattCGTAGCTCCAGTGATCAACAGATTCTTGAGAAGATCTTCAGTGTGTGCTGAAGCATTCAAccctgatgaggaggaggaggacaaagaTCCCAGGATCACCCATCCTAAAACCGACGAGCAGAGGCACAGACTACAGGAGGCCTGCAAAGACATTCTACTGTTCAAAAATCTAGACCCGGAGCAGATGTCCCAGGTACTGGATGCAATGTTTGAGatgtcagtggaggctggcgAACACATTATAGACCAGGAGGACGATGGGGACAACTTCTATGTTATTGAAAGAGGGACCTTTGACATCCTGATGAAAGCAGACAGAGTGGAGCGTGTGGTGGGTTCCTATGACAATCAGGGCAGTTTTGGCGAGCTTGCCCTGATGTACAACACACCCAGGGCTGCCACCATCATCGCCACCTCTGTGGGAGCCCTCTGGTGCATGGACCGACTGACGTTCAGGAGGATCATAGTAAAGAACAACCACAAGAAGAGGAAGATGTACGAGGCTTTCATCGAGTCACTGCCCCTGCTCACATCCCTACAGGTCTCTGAGAGGATGTGTGTGGTGGATGTTCTATCCTCCAAGACCTACAGTGACGGAGAACAGATTATAGCTCAGGGGGCCACAGCGAACTGTTTCTACATAGTAGAATCTGGTCAAGTACGAATAACAATGAATACGAGCAAGTTGaaaaaggaggagggagaaggggtggaagaggaggtggagattGCCATGTGCACCAGGGGACAGTACTTTGGAGAGCTGGCTCTGGTTACCAACAAGCCCCGGGCTGCTTCAGCGTACGCTGTAGGAAACGTCAAGTGTCTAGTGATGGACGTGCAGGCGTTTGAGCGTCTGCTGGGCCCCTGCATGGACATCATGAAGAGGAACGTTGTCAGCTACGACGAGCAGCTGGCCGCGCTGTTCGGAAGTAACACTGGCATTCACGACAACGACACGGCGTGATAGAATACACTCGGCAAAGACAGCTGAGACGGGATGTTTTTTTATAACAAGGGACTCCTAGACTCTCCCGAGGGGCCAAATACTCCTGGTACTGATCTAGAGGTTGGTTCATACTGCAAACTCATACTTCATATGAGATGAATCCCATTTGTATAGTTTTAGTATTTTTTGTATGATACATGAACATAGTGGTGTTTGTTAATAACCTTCAGATTCATTCCTGGCCTTATATCCAAATGGTACATATGAAGACACACTTTGTCTAATAGATGAATTACGTTACGGCTTTTGATTCAAAATGAAACATTGGGGTCATCTATTGTCCAGCATTGAACCTTCCCTCACGGAAAAACACTTTAAAAAGACGTtgctatttttgttgttgtttgcctATAAATGTTACCACCAAGCATATGAATTCATAATGACATTAGATTATACTTGGTGTTTCTTATCTCCCAAGTGTATTAGCTACTTTTTAGAGTAACATTTTAGTCTGGACAATTTATGTCCTATGAAAACAACAGTTTTTGCAGAGGAAGAAATCAACATAGAGCTAGTGGTATATTTCAGTGTATCTTTCACTTGTAGTTGTCAACTTATGTTTGATTAAATTGAACAATGCATATTGTAATTGAAGTTTAATAGTGCTGTAGTCCTGAGTTAAGCATTTATGATCTAGTTGGTAAAGAGCATTAATTAATAGCCAATAATTTGTCAAACTAACATATTATATTTGTTAAATCAAATGGGACATTGACACAACTTGGTGCTCTGTAGCAAAAAAAGGGCAGTATTTCCTGACGAATCAATGTGAAGTTGGTCTAAACAGAGCCAATTAATTCATGGACTGTGTTGCTTACTTCATTTTTTTTCACTAGTTATTGTGTTATAAGCTGTTGATAAATTGTCAGCGGATGTTTCTTAGACACAGTGTCTTTTCCCATGTGATTTTTGATGTATCCGTCCGTGGGTGTTTTGGAGAGCTGATTTTGAGCTCAATATTTCCAACAGGTGAAACAGACAGGGTGTCTTCATAAGGGAAATATCAGATAGGGAAATTCTCTTAGCATTTTGCATATTGCTGCTAGACCTACGTTTGGTACATAGTATCTTTGGTACAGTCTGTTAAGAAAGAAAatatgtgttgtttttgtcattcaCGCACTGCTCTCCTTAATAGCTTAGTACTGTATTTGACTTTTTGAACCAGAGATTTCATAAATGTCATTATTCTAACCTGCCAATACATTTGTCAGATAGATGTTCAACCTTCAATGCAAGTGAATCTCTAAACCAGTTTTATCAGTCAACTGAAAGGATTTATCTTGCCTACCTCTGCACACAATTACCTATGCCAACAAACAGGTATCTGCCATTCCTTGTTTCATGGTGTTAATGTTTGTGTTCTGTGTGTAAAAACAGAGTTCAGTTTGTTTCATTGAATCTGTTTTTAAAGTTTCCACACCGACACTTGCTTTGCAGTTTTCCCCCTTTTTCTTGTTATATTGTTACAATACGCCTAATTTCCTGATTATTTTCAGTATCTTAACTGTTATTTGAATTTCCATTGCAATAAACTTAGGTTTTGTATAAATAA

Function

NR:

description
cAMP-dependent protein kinase type II-beta regulatory subunit-like

GO: NA

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577425.2 True 3186 mRNA 0.42 11 29993445 30002054

Neighbor

gene id symbol gene type direction distance location
LOC110500208 LOC106609208 coding upstream 389 29980884 ~ 29993056 (+)
LOC118942782 NA coding upstream 363435 29624282 ~ 29630010 (+)
LOC110501056 LOC106576126 coding upstream 741536 29247917 ~ 29251909 (+)
LOC110500200 LOC106609198 coding upstream 798649 29189035 ~ 29194796 (+)
LOC110500199 LOC106609197 coding upstream 809494 29173599 ~ 29183951 (+)
LOC110500210 LOC106609211 coding downstream 350 30002404 ~ 30009586 (+)
cin cin coding downstream 71393 30073447 ~ 30075203 (+)
LOC110501059 LOC106609213 coding downstream 97316 30099370 ~ 30113179 (+)
LOC110500214 cssa17h12orf56 coding downstream 129019 30131073 ~ 30135545 (+)
LOC110500213 LOC106609216 coding downstream 133572 30135626 ~ 30138363 (+)
G1725360 NA non-coding upstream 34154 29959083 ~ 29959291 (+)
G1725356 NA non-coding upstream 37563 29955519 ~ 29955882 (+)
G1725345 NA non-coding upstream 40886 29949562 ~ 29952559 (+)
G1725341 NA non-coding upstream 58592 29934629 ~ 29934853 (+)
G1725340 NA non-coding upstream 59083 29933931 ~ 29934362 (+)
G1725432 NA non-coding downstream 122619 30124673 ~ 30124884 (+)
G1725436 NA non-coding downstream 126810 30128864 ~ 30129130 (+)
G1725438 NA non-coding downstream 128699 30130753 ~ 30131062 (+)
G1725440 NA non-coding downstream 141732 30143786 ~ 30181651 (+)
G1725312 LOC106576088 other upstream 101488 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 733516 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 779162 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 1649711 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 1668828 28311018 ~ 28335924 (+)
G1726209 LOC106609221 other downstream 579948 30582002 ~ 30590636 (+)
G1726222 NA other downstream 603246 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 879789 30881776 ~ 30889293 (+)
G1726863 NA other downstream 1138543 31140597 ~ 31141090 (+)
G1727146 NA other downstream 1447342 31449396 ~ 31450117 (+)

Expression


Co-expression Network