LOC110500210 (LOC106609211)


Basic Information

Item Value
gene id LOC110500210
gene name LOC106609211
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30002404 ~ 30009586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957593.1
CATAGATTGACGTCTGAAGCCACCAATAATGTTTGCGAAAAAGAATAATATTTATCTTTCACTTGATGGCGACTGTTTTGtcAGATGACCTAAAGAAGCATTATAACATGGTGTGGGAAATTAAGAGTCCtctgagcagcagcagtagtatgttGGATATCCCAGGGCCAGGGCCAGAGGCAGGTAGAGACCAGGGATTGGTCCTGCTCCAGTGTGAAGAACAGCTGCCCTCCTCCCCCGGATGCCCCACCAGTGACAGCCACATGGAATACGATGACCTCCCGgagctggaggaggtggaggaggaccaGACAGCCCCCACCGTGTTTCAAGTGGGGGCAGGGGTGTCCCATCAGGAACGTGacggacacacacagactcaTACGGCCGGGCCCCTGGACACACACTGGCTCACACAGCTAGCTCACATCGCCACAGGCCCCCAGAGTCCCCTACTACAGGGTTCCACTCAGGTCGTCAGGTCAACTCCCGTCCACATCTTTGGCACCAGTAGCAACCTCCATTCCTACGCACGGCCTCCCCACACCCGGCCTCCCCACACCCGGCCTCCCCTGACCTCCAGCAGCCTGCCCTCTAGAGGCCAACACAGGGAGCGCAGCAGGCGAGTCAGGgtCAGTAGTGAGTGTGAGTCTGCTGTGTCCTGTCACTCCTCTGTGTCTGATGACGAGGACATGGGCTGGAGCCACTCCTGGCCACCTACTGCTTGGCACTGCTTCCTCAAagGCACTCGTCTGCGGTTCCATAAGGGTTCTAGTGTGGAGTGGCAGGATGCTGAGGAACTGGTGTCAGACGAAGACTCAGACGATGAGGCAGAGGCTATAACCCGCCCCCTGAAGGGCTATGGTCGTGAGGGCTTGAGGCTGGTGTCCCACACAGAGAGCCGGGCGTTCGGGCAGTCCGTCCTCAAGCTGACCTTTGACCCAGGTGCCTGTGGGGAGTGTCTTCTGTCCTCTGAGTGTCAGCTGGACCACCCGTTCTACGTCAGAAACAAAGGCTGGTCGTCGTTCTACCCCAGTCTGACCGTGGTGCAGTATGGGATCCCGTGCTATGAGGTGATGGTGGGAGACGTGTGTCTGCCTCCTGGACACAGAGATGCCGTCCACACTGACGACTCCCTGGTGTTCGACACGTTCAGGAGTTATGACTTCACTCCCCTGGACTCGTCGGCGGTGTACGTTCTGAGCAGCATGGCCCGGCAGCGTAGGGCCTCCCAGTCCGCCGTCAGCCCCGACCAAGACGCACACCGCAACAAGCCAATTAAGAGCCAGCAGGACTCGGGAGCAGCCGGCGGGGCTTCGCCCACAAAGTGCAAGCGGCCAATGAATGCATTCATGCTATTCGCAAAGAAGTTCCGGTTGGAGTACACCCAGATGTACCCTGGGAAggacaacagAGCGATCAGTGTGATCCTGGGAGAGAAGTGGAAGAAGatgcgaggagaggagaggaggatgtacaCCATGGAGGCCAAGGCTCTGGCTGACGAGCAGAAGAGACTCAACCCTGACTGCTGGAAACGCAAGAGAACCAACTCCGtgaggagaggacacacacacatatcctaaAAAGACTCTTGCATGGTGGTCATTTCAATATCAGCCCCTTGGAACTGTACCTAACCTTTCTTCTCTCTTTAACTTGTTCTCCGTTACAGGGTTCCCAGGGGAACTAAGAGGCGCAGACACacgagagagggatgaggcagatgacaggagaaaagagagggaggcgATGGAGGGGAGGGCACGCCGAGAAGAGGGGTGTATGGGGGGAGGCAGTACATGCTCAAACCAGCTACCACTCCTGAGCTGAGGAagacacgcgcgcacacgcacgcacacacacacactttagagcCAGCTACACTTCCTGTGACGTTACTCTACTGTGATTCGGGGTATGCTTGCTTTCTAAACAAATAGAGATTTatgtaagaaaaaaatatatatatatatagatatatacagtatatataatatactaaCTGTGCTTGAATATAAGATATTTTTTTAATGTCCGACTTGCCTTAATCTTCCAAAGCAAGATTGTATTCTTTTTAAATCATTTTGATTAATTTCAGGTAATTTCATACCTTATAGCTTGAAAAACATGAGCCCATGTGGTGCTGTAGAGTAGAAAAGGGGGAGGTGAAAACTAAACGTCTATTTTTCAACCAGAGATCAGTCTAGGGAATTAAAAAAATGCTTCCGATTA
>XM_036957594.1
CATAGATTGACGTCTGAAGCCACCAATAATGTTTGCGAAAAAGAATAATATTTATCTTTCACTTGATGGCGACTGTTTTGtcAGATGACCTAAAGAAGCATTATAACATGGTGTGGGAAATTAAGAGTCCtctgagcagcagcagtagtatgttGGATATCCCAGGGCCAGGGCCAGAGGCAGGTAGAGACCAGGGATTGGTCCTGCTCCAGTGTGAAGAACAGCTGCCCTCCTCCCCCGGATGCCCCACCAGTGACAGCCACATGGAATACGATGACCTCCCGgagctggaggaggtggaggaggaccaGACAGCCCCCACCGTGTTTCAAGTGGGGGCAGGGGTGTCCCATCAGGAACGTGacggacacacacagactcaTACGGCCGGGCCCCTGGACACACACTGGCTCACACAGCTAGCTCACATCGCCACAGGCCCCCAGAGTCCCCTACTACAGGGTTCCACTCAGGTCGTCAGGTCAACTCCCGTCCACATCTTTGGCACCAGTAGCAACCTCCATTCCTACGCACGGCCTCCCCACACCCGGCCTCCCCACACCCGGCCTCCCCTGACCTCCAGCAGCCTGCCCTCTAGAGGCCAACACAGGGAGCGCAGCAGGCGAGTCAGGgtCAGTAGTGAGTGTGAGTCTGCTGTGTCCTGTCACTCCTCTGTGTCTGATGACGAGGACATGGGCTGGAGCCACTCCTGGCCACCTACTGCTTGGCACTGCTTCCTCAAagGCACTCGTCTGCGGTTCCATAAGGGTTCTAGTGTGGAGTGGCAGGATGCTGAGGAACTGGTGTCAGACGAAGACTCAGACGATGAGGCAGAGGCTATAACCCGCCCCCTGAAGGGCTATGGTCGTGAGGGCTTGAGGCTGGTGTCCCACACAGAGAGCCGGGCGTTCGGGCAGTCCGTCCTCAAGCTGACCTTTGACCCAGGTGCCTGTGGGGAGTGTCTTCTGTCCTCTGAGTGTCAGCTGGACCACCCGTTCTACGTCAGAAACAAAGGCTGGTCGTCGTTCTACCCCAGTCTGACCGTGGTGCAGTATGGGATCCCGTGCTATGAGGTGATGGTGGGAGACGTGTGTCTGCCTCCTGGACACAGAGATGCCGTCCACACTGACGACTCCCTGGTGTTCGACACGTTCAGGAGTTATGACTTCACTCCCCTGGACTCGTCGGCGGTGTACGTTCTGAGCAGCATGGCCCGGCAGCGTAGGGCCTCCCAGTCCGCCGTCAGCCCCGACCAAGACGCACACCGCAACAAGCCAATTAAGAGCCAGCAGGACTCGGGAGCAGCCGGCGGGGCTTCGCCCACAAAGTGCAAGCGGCCAATGAATGCATTCATGCTATTCGCAAAGAAGTTCCGGTTGGAGTACACCCAGATGTACCCTGGGAAggacaacagAGCGATCAGTGTGATCCTGGGAGAGAAGTGGAAGAAGatgcgaggagaggagaggaggatgtacaCCATGGAGGCCAAGGCTCTGGCTGACGAGCAGAAGAGACTCAACCCTGACTGCTGGAAACGCAAGAGAACCAACTCCGGTTCCCAGGGGAACTAAGAGGCGCAGACACacgagagagggatgaggcagatgacaggagaaaagagagggaggcgATGGAGGGGAGGGCACGCCGAGAAGAGGGGTGTATGGGGGGAGGCAGTACATGCTCAAACCAGCTACCACTCCTGAGCTGAGGAagacacgcgcgcacacgcacgcacacacacacactttagagcCAGCTACACTTCCTGTGACGTTACTCTACTGTGATTCGGGGTATGCTTGCTTTCTAAACAAATAGAGATTTatgtaagaaaaaaatatatatatatatagatatatacagtatatataatatactaaCTGTGCTTGAATATAAGATATTTTTTTAATGTCCGACTTGCCTTAATCTTCCAAAGCAAGATTGTATTCTTTTTAAATCATTTTGATTAATTTCAGGTAATTTCATACCTTATAGCTTGAAAAACATGAGCCCATGTGGTGCTGTAGAGTAGAAAAGGGGGAGGTGAAAACTAAACGTCTATTTTTCAACCAGAGATCAGTCTAGGGAATTAAAAAAATGCTTCCGATTA

Function

NR:

description
HMG box-containing protein 1-like

GO: NA

KEGG:

id description
K21644 HBP1; HMG box transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957593.1 False 2235 mRNA 0.53 10 30002404 30009586
XM_036957594.1 True 2116 mRNA 0.53 11 30002404 30009586

Neighbor

gene id symbol gene type direction distance location
LOC110500209 LOC106609209 coding upstream 350 29993445 ~ 30002054 (+)
LOC110500208 LOC106609208 coding upstream 9348 29980884 ~ 29993056 (+)
LOC118942782 NA coding upstream 372394 29624282 ~ 29630010 (+)
LOC110501056 LOC106576126 coding upstream 750495 29247917 ~ 29251909 (+)
LOC110500200 LOC106609198 coding upstream 807608 29189035 ~ 29194796 (+)
cin cin coding downstream 63861 30073447 ~ 30075203 (+)
LOC110501059 LOC106609213 coding downstream 89784 30099370 ~ 30113179 (+)
LOC110500214 cssa17h12orf56 coding downstream 121487 30131073 ~ 30135545 (+)
LOC110500213 LOC106609216 coding downstream 126040 30135626 ~ 30138363 (+)
LOC110500212 cr3l2 coding downstream 129487 30139073 ~ 30166652 (+)
G1725360 NA non-coding upstream 43113 29959083 ~ 29959291 (+)
G1725356 NA non-coding upstream 46522 29955519 ~ 29955882 (+)
G1725345 NA non-coding upstream 49845 29949562 ~ 29952559 (+)
G1725341 NA non-coding upstream 67551 29934629 ~ 29934853 (+)
G1725340 NA non-coding upstream 68042 29933931 ~ 29934362 (+)
G1725432 NA non-coding downstream 115087 30124673 ~ 30124884 (+)
G1725436 NA non-coding downstream 119278 30128864 ~ 30129130 (+)
G1725438 NA non-coding downstream 121167 30130753 ~ 30131062 (+)
G1725440 NA non-coding downstream 134200 30143786 ~ 30181651 (+)
G1725312 LOC106576088 other upstream 110447 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 742475 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 788121 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 1658670 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 1677787 28311018 ~ 28335924 (+)
G1726209 LOC106609221 other downstream 572416 30582002 ~ 30590636 (+)
G1726222 NA other downstream 595714 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 872257 30881776 ~ 30889293 (+)
G1726863 NA other downstream 1131011 31140597 ~ 31141090 (+)
G1727146 NA other downstream 1439810 31449396 ~ 31450117 (+)

Expression


Co-expression Network