Gene
RNA
| Item | Value |
|---|---|
| gene id | cin |
| gene name | cin |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 30073447 ~ 30075203 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cin | Predicted to enable molybdopterin molybdotransferase activity. Involved in inter-male aggressive behavior and molybdopterin cofactor biosynthetic process. Predicted to be active in several cellular components, including dendrite; postsynaptic membrane; and postsynaptic specialization. Is expressed in adult head and organism. Human ortholog(s) of this gene implicated in inherited metabolic disorder and molybdenum cofactor deficiency type C. Orthologous to human GPHN (gephyrin). |
| description |
|---|
| Molybdenum cofactor synthesis protein cinnamon |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001160580.1 | False | 929 | mRNA | 0.48 | 3 | 30073447 | 30075180 |
| TU1976534 | True | 943 | lncRNA | 0.47 | 3 | 30073456 | 30075203 |
30,069,200
30,069,600
30,070,000
30,070,400
30,070,800
30,071,200
30,071,600
30,072,000
30,072,400
30,072,800
30,072,800
30,073,200
30,073,600
30,074,000
30,074,400
30,074,800
30,075,200
30,075,600
30,076,000
30,076,400
NC_048585.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500210 | LOC106609211 | coding | upstream | 63861 | 30002404 ~ 30009586 (+) |
| LOC110500209 | LOC106609209 | coding | upstream | 71393 | 29993445 ~ 30002054 (+) |
| LOC110500208 | LOC106609208 | coding | upstream | 80391 | 29980884 ~ 29993056 (+) |
| LOC118942782 | NA | coding | upstream | 443437 | 29624282 ~ 29630010 (+) |
| LOC110501056 | LOC106576126 | coding | upstream | 821538 | 29247917 ~ 29251909 (+) |
| LOC110501059 | LOC106609213 | coding | downstream | 24190 | 30099370 ~ 30113179 (+) |
| LOC110500214 | cssa17h12orf56 | coding | downstream | 55893 | 30131073 ~ 30135545 (+) |
| LOC110500213 | LOC106609216 | coding | downstream | 60446 | 30135626 ~ 30138363 (+) |
| LOC110500212 | cr3l2 | coding | downstream | 63893 | 30139073 ~ 30166652 (+) |
| LOC110501060 | LOC106576074 | coding | downstream | 94299 | 30169479 ~ 30218776 (+) |
| G1725360 | NA | non-coding | upstream | 114156 | 29959083 ~ 29959291 (+) |
| G1725356 | NA | non-coding | upstream | 117565 | 29955519 ~ 29955882 (+) |
| G1725345 | NA | non-coding | upstream | 120888 | 29949562 ~ 29952559 (+) |
| G1725341 | NA | non-coding | upstream | 138594 | 29934629 ~ 29934853 (+) |
| G1725340 | NA | non-coding | upstream | 139085 | 29933931 ~ 29934362 (+) |
| G1725432 | NA | non-coding | downstream | 49493 | 30124673 ~ 30124884 (+) |
| G1725436 | NA | non-coding | downstream | 53684 | 30128864 ~ 30129130 (+) |
| G1725438 | NA | non-coding | downstream | 55573 | 30130753 ~ 30131062 (+) |
| G1725440 | NA | non-coding | downstream | 68606 | 30143786 ~ 30181651 (+) |
| G1725312 | LOC106576088 | other | upstream | 181490 | 29890286 ~ 29891957 (+) |
| G1724262 | LOC106609200 | other | upstream | 813518 | 29256778 ~ 29259929 (+) |
| G1724234 | LOC106609199 | other | upstream | 859164 | 29209169 ~ 29214283 (+) |
| LOC110500183 | LOC106609180 | other | upstream | 1729713 | 28341423 ~ 28343734 (+) |
| LOC110501048 | LOC106609163 | other | upstream | 1748830 | 28311018 ~ 28335924 (+) |
| G1726209 | LOC106609221 | other | downstream | 506822 | 30582002 ~ 30590636 (+) |
| G1726222 | NA | other | downstream | 530120 | 30605300 ~ 30611361 (+) |
| LOC110500226 | LOC106576059 | other | downstream | 806663 | 30881776 ~ 30889293 (+) |
| G1726863 | NA | other | downstream | 1065417 | 31140597 ~ 31141090 (+) |
| G1727146 | NA | other | downstream | 1374216 | 31449396 ~ 31450117 (+) |
