cin (cin)


Basic Information

Item Value
gene id cin
gene name cin
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30073447 ~ 30075203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160580.1
ACTCCATAAGCAGCTGTCCTTGAATGCACTCGGGAAACATGTTACAGAACTAAAATTACATCATTTAAATGATATTTTGGCATTATTGATCAAACCATTCATACCGGAGTAGTGATATAAACATTAATGTAAGTTTTCCCAAGCTCAGTGATGTCAGCCCCTAACTCGAACCAGAGAAAAGCATGCTGGGGCGCTAGGGACGAGCTGTGGAAGTGCCTTGATGATAACCAGGACAATGCCTCCTCCTGTGAGAAGTTCCAGAAAGAGTTTGAGGCGAGCTGTCCAGCTCAGTGGGTGAAACACTTCACCAAGAGGAGAGACTTTTTGAAGTACAAGGACAAGATGCAGACGGAGGGCTTTGAGCCTGCTGACGGGCCTAAAGAGTCACGGTCCTAGCCAGTAGCCACTGGTCAGAAGACTTGAGAGGAGGGCTTCCTGGGGCCTCCTGGTTGATGGACAGCAGTGGACTGTCACTGGTCACTAGAGCACAATCTTGCCATGCCTCCCCAGTGACAATAGATGCTGGAGTTCAGTGACCTAACACCTGGACACTGGGTAGATGTCAACTACGCGCCGCAGTCAGATTCTCAAGCTTCTCCTCAAGTGTGCACTTGTCTCGTTCACTCCTCGCCTCAGACTAGTAAACCGTATCTACGTCACGCATGGGACAGGTGTGTGGTGACGTAACCACGGTGAGCGCTGTGGAAAGTGCACCCCTCACAGTCACAGACATGGTTCTACAGGctttctctgtatccctctctactctctcgaTACAACGTCAAGGGGTTGTATGTGGTGTGACACAAATCAACTGCTCCGTGACTGATAGTCTAACCACAATCGTTCTTATTTATGCTATTGTCAGAGATAGATTCAGATATTGTTCTTTATTTATGAATAGACAGTGACgttatgtgtgtgtgatt
>TU1976534
GCAGCTGTCCTTGAATGCACTCGGGAAACATGTTACAGAACTAAAATTACATCATTTAAATGATATTTTGGCATTATTGATCAAACCATTCATACCGGAGTAGTGATATAAACATTAATGTAAGTTTTCCCAAGCTCAGTGATGTCAGCCCCTAACTCGAACCAGAGAAAAGCATGCTGGGGCGCTAGGGACGAGCTGTGGAAGTGCCTTGATGATAACCAGGACAATGCCTCCTCCTGTGAGAAGTTCCAGAAAGAGTTTGAGGCGAGCTGTCCAGCTCAGTGGGTGAAACACTTCACCAAGAGGAGAGACTTTTTGAAGTACAAGGACAAGATGCAGACGGAGGGCTTTGAGCCTGCTGACGGGCCTAAAGAGTCACGGTCCTAGCCAGTAGCCACTGGTCAGAAGACTTGAGAGGAGGGCTTCCTGGGGCCTCCTGGTTGATGGACAGCAGTGGACTGTCACTGGTCACTAGAGCACAATCTTGCCATGCCTCCCCAGTGACAATAGATGCTGGAGTTCAGTGACCTAACACCTGGACACTGGGTAGATGTCAACTACGCGCCGCAGTCAGATTCTCAAGCTTCTCCTCAAGTGTGCACTTGTCTCGTTCACTCCTCGCCTCAGACTAGTAAACCGTATCTACGTCACGCATGGGACAGGTGTGTGGTGACGTAACCACGGTGAGCGCTGTGGAAAGTGCACCCCTCACAGTCACAGACATGGTTCTACAGGctttctctgtatccctctctactctctcgaTACAACGTCAAGGGGTTGTATGTGGTGTGACACAAATCAACTGCTCCGTGACTGATAGTCTAACCACAATCGTTCTTATTTATGCTATTGTCAGAGATAGATTCAGATATTGTTCTTTATTTATGAATAGACAGTGACgttatgtgtgtgtgatttgttgTGATAAATAAAGACGAGT

Function

symbol description
cin Predicted to enable molybdopterin molybdotransferase activity. Involved in inter-male aggressive behavior and molybdopterin cofactor biosynthetic process. Predicted to be active in several cellular components, including dendrite; postsynaptic membrane; and postsynaptic specialization. Is expressed in adult head and organism. Human ortholog(s) of this gene implicated in inherited metabolic disorder and molybdenum cofactor deficiency type C. Orthologous to human GPHN (gephyrin).

NR:

description
Molybdenum cofactor synthesis protein cinnamon

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160580.1 False 929 mRNA 0.48 3 30073447 30075180
TU1976534 True 943 lncRNA 0.47 3 30073456 30075203

Neighbor

gene id symbol gene type direction distance location
LOC110500210 LOC106609211 coding upstream 63861 30002404 ~ 30009586 (+)
LOC110500209 LOC106609209 coding upstream 71393 29993445 ~ 30002054 (+)
LOC110500208 LOC106609208 coding upstream 80391 29980884 ~ 29993056 (+)
LOC118942782 NA coding upstream 443437 29624282 ~ 29630010 (+)
LOC110501056 LOC106576126 coding upstream 821538 29247917 ~ 29251909 (+)
LOC110501059 LOC106609213 coding downstream 24190 30099370 ~ 30113179 (+)
LOC110500214 cssa17h12orf56 coding downstream 55893 30131073 ~ 30135545 (+)
LOC110500213 LOC106609216 coding downstream 60446 30135626 ~ 30138363 (+)
LOC110500212 cr3l2 coding downstream 63893 30139073 ~ 30166652 (+)
LOC110501060 LOC106576074 coding downstream 94299 30169479 ~ 30218776 (+)
G1725360 NA non-coding upstream 114156 29959083 ~ 29959291 (+)
G1725356 NA non-coding upstream 117565 29955519 ~ 29955882 (+)
G1725345 NA non-coding upstream 120888 29949562 ~ 29952559 (+)
G1725341 NA non-coding upstream 138594 29934629 ~ 29934853 (+)
G1725340 NA non-coding upstream 139085 29933931 ~ 29934362 (+)
G1725432 NA non-coding downstream 49493 30124673 ~ 30124884 (+)
G1725436 NA non-coding downstream 53684 30128864 ~ 30129130 (+)
G1725438 NA non-coding downstream 55573 30130753 ~ 30131062 (+)
G1725440 NA non-coding downstream 68606 30143786 ~ 30181651 (+)
G1725312 LOC106576088 other upstream 181490 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 813518 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 859164 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 1729713 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 1748830 28311018 ~ 28335924 (+)
G1726209 LOC106609221 other downstream 506822 30582002 ~ 30590636 (+)
G1726222 NA other downstream 530120 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 806663 30881776 ~ 30889293 (+)
G1726863 NA other downstream 1065417 31140597 ~ 31141090 (+)
G1727146 NA other downstream 1374216 31449396 ~ 31450117 (+)

Expression


Co-expression Network