LOC110501059 (LOC106609213)


Basic Information

Item Value
gene id LOC110501059
gene name LOC106609213
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30099370 ~ 30113179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957596.1
CCGCTCCACAGCGGGTTACGTTACGCAAGAGCTGCCGTCAGAACAGGGGATcacagggagcagagagagagggaaagcagAGAGGATGGCATAGAGAGAAGGGACAGAggcagagtaaagagagagagagagagagagagagagagagcagggagcagAGATTGCAGGGACAGGCAGATTACAGAGGGGCTACGATCCACGGTGCACCAGCGACATGGACAACACACAGACCTCTTTGTCTCCACTGAGGGAGTGAAGAGACGAGACAAGGACCGGGAAGAGGACAGGACACTGCGAGAGGAAGTGATTTGAAGAACAACTGTGTTTCTACAGCTTTTGCTGGGACACCTTGAGTGGCGGGACGGCAAGGGACCAGCTGTGAGTGTCATCTGGCCATGAGAGAGTGACGGAGAAAGGACATCTAGTGCTACTGAGGACATCTTGGTATCTTCCTCTCCTGCCTGTCCCcatgtctagaggagggaggcCCCTGCGTGGGTGGGCCCGGATGTGGCCCCTGGCGTGTGCACTGGCCCTGGCTGCATGCTCGTCGGTCAGCCCCCTCCTCCAAGAGACCACCTCTGATCCTCCCATTGCTACAGAGACACAGACTGAAGTATGGACACAGCCAGACCATCAGACAGAGGCACAGACACTTGCAGAGTTTCAGACCCAGCCAGAGCTACAGACAGAGGCACAGACtgtggcacagacacagacagagctaCAGACACAGCCTGAGCTACAGACTGAGTCCCCAACAGAGTTAGAGTCACAGGCAGCTACCATCAACCACACAGGTCTGTCGTGTGCGTCCGTGCTTCCCCCGAGGCGGGGGTCGTTCTATGTAGAGCGTGGGACGGGGGTGTCGGTGGGTACAGTGCTGGCCTTCTGGTGCAGGGAGGGCTACCAGCTGGTGGGCAGTGATAAGATCTCCTGCAGCGTCCGGGCAGGCAAAGCCCAGTGGAGCAACTTCCTGCCAGTCTGTGAGGCCATCCCGAGGCCAGAGGACCGGGGTCTGCGCGTGGCCGTGCTGGCCTCGGTGGTCAGTGGCATCGTCATCCTGGCaatgtctctctccttcatcATCTGCTGCCTGCAGGAACGCACTGGGAAGGACAGGGGCTCCAGGAGGGACGGCAGGATCAGGCGTAGAGACACGCGGTCTTCTCGGCGTAGTGAGTGctggctggagagagaggagggggattggGACACATTCCCCCCTCCTAAGATCTTCCACCTGTCCCAGCGGCCGGACCTCCGGCTGGCTGCAGAGAGCCCGGTCTACCTGGGGGGCATGGCTGGCTTCGACAACCGTGGATACCTGAGgagtcAGGAGAGCCTACTGAAGGCCACGCTTCCTGGTCTGTTCCGGACGGAGAGTCAGATCATCTACCCCCACGTGGTGCTCCAGAGAGTCCCCACCCCCACCGCCCcgactgcccctacagcccctgTCTACCTCCACAATATGCCCTCCAACTCTGCCTCCAACTCTGGATGTGCTCCCACACAGCCACACCACATGCCCCCATACCCTACCCCGCAGTATCCCATCCACAACTCCACCCCCCAGCGAGTTCCATGGCAAACGCAGCCCCATTGAACTgtcactgtcccctctctctctctccctctctgtaggtCAAGGGTCAAGAAGGAATGATCAAATAACACACTATTCCCTAATAAGTGTGCTacttttgagcagagccctatgcAGTTAACATACACGTTTTCGTCAGAGGTAGTGTAAtgcatagggaataaggtgttatTTGTGATTTGAGAACAGCCCTCAGACCCCTGTCAGTGAGATGCTTCTACTACTCCAAGGATAGATGGATGGGAAACGTgctgctgtacatactgtatgatatgaactgacagacagacagacagacagacagacaagagggTATTTTCCAGCACTTTCTGACTCCTCGCCTCTTCTCTCAGTGGGGAAGCCCTTTCTGCTGTTTCTAGTGTATCTCTACACGGCAGAGAAGGGTTTTCtatctctaccatcctctctctgtctcctgtcgacttttggtccttttgtggtgtcCTCCATTTTCACAAGATCATTCTTCCTATTAGTCTTCTGATTGGTCGAAGTCACCCTCAGAGCGGGCCTATCAGGACACACTTAGCTGAAGTTCACTTGTTGATGTCCCTGACTGAAGACCGTGAGATGTTGTTTGGCGGTGGTCACCAAGTCTCGCCACCGACCAAAGAAGAGAATGGACTTAGCTGAGTAAAGTTGATGCAGAAATCATCCCCAATACCATGTATGGGTAATAATATATTATTCTTAAAGGTCACGAACAGTCAAAATCACACTTTTCATGAATTTggatgatatttggatgaaagTATGTTGACCCaagtatgaaaaatgactgttTCTTCTACACTTCtaaagtttgatcataaagttactggtccccaCCCCCGGTATTGGATTCAGGAAGCAGGATTATTAAGGGGATAGGGTGACATCACCCTAATGCTCTCGTTTTAACACACCAATGGTAACACGAtattctcttacctaatttaaataagtactGCCTTGTAACAAACACCGGAGAAAGCGTGTTTGCAGAGGGGGCGTGGTTTATAGAGCTAGATAACTACTCTACTGGTGTTACCTAgtcactggctagctaggtcttcagccagcGTGGAACTAAAGGGGGGACGGGTCGTTCAGAACCCTGACACAGTTGTCAGGTTAACACATCCTTGGGTGCTGCTGTGAATCGCAACACCGGAAACATGCCAAACGGGagatgtatataaaaaaaaaagatgtataTCACTGATGCGATTTCAATGTTTGTTTGAGTAGCTTTGTGTAGCACCAAATTAGCTTGAGAGGATTTTAGTGTAATACTGCTCATTGCATCCAAGTTACTTGACATAGGCATTTAAAAGAGCTCAGAGTACTCAGAGTTCATGAATAtcagctccccgcccactcagcctgtcttttcaaacttcctggtagttAGCCATGAGAGAAAAAGCAATTTTCTAAAATGTTTAGCATTTATATCCCAAAATAATATAATGGCTGATATTTTTGTCACTcaaaaggctattttacatgggAATCAGAATGACTCTTCAGGACCTTTTAATGATATCAGAAGGCATTTCAGCAAAGTTCACCCATTATTTCCCCCCCGTTTTGTTCTAAAGCTTTGGATGAAAAATGTGGAGAGCTCCTTACCTGTTGTTGAGGTCTTTGTCGTGTGTTTTTCTACGGTGGTGGAACAGTCACACCAACTAACCTGCACTTTATGGATTTTACTGACGGGCTGGCAATAGCAATTCCAAGAACCTTGCACTGATTATTCCCGCAATATGTTTGTATGAAAAATGGTTTCTACCTGAAAactgattaaatagatttttgtttAGTTGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106609213 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957596.1 True 3440 mRNA 0.50 5 30099370 30113179

Neighbor

gene id symbol gene type direction distance location
cin cin coding upstream 24190 30073447 ~ 30075203 (+)
LOC110500210 LOC106609211 coding upstream 89784 30002404 ~ 30009586 (+)
LOC110500209 LOC106609209 coding upstream 97316 29993445 ~ 30002054 (+)
LOC110500208 LOC106609208 coding upstream 106314 29980884 ~ 29993056 (+)
LOC118942782 NA coding upstream 469360 29624282 ~ 29630010 (+)
LOC110500214 cssa17h12orf56 coding downstream 17894 30131073 ~ 30135545 (+)
LOC110500213 LOC106609216 coding downstream 22447 30135626 ~ 30138363 (+)
LOC110500212 cr3l2 coding downstream 25894 30139073 ~ 30166652 (+)
LOC110501060 LOC106576074 coding downstream 56300 30169479 ~ 30218776 (+)
LOC110500216 LOC106609220 coding downstream 150920 30264099 ~ 30410281 (+)
G1725360 NA non-coding upstream 140079 29959083 ~ 29959291 (+)
G1725356 NA non-coding upstream 143488 29955519 ~ 29955882 (+)
G1725345 NA non-coding upstream 146811 29949562 ~ 29952559 (+)
G1725341 NA non-coding upstream 164517 29934629 ~ 29934853 (+)
G1725432 NA non-coding downstream 11494 30124673 ~ 30124884 (+)
G1725436 NA non-coding downstream 15685 30128864 ~ 30129130 (+)
G1725438 NA non-coding downstream 17574 30130753 ~ 30131062 (+)
G1725440 NA non-coding downstream 30607 30143786 ~ 30181651 (+)
G1725312 LOC106576088 other upstream 207413 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 839441 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 885087 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 1755636 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 1774753 28311018 ~ 28335924 (+)
G1726209 LOC106609221 other downstream 468823 30582002 ~ 30590636 (+)
G1726222 NA other downstream 492121 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 768664 30881776 ~ 30889293 (+)
G1726863 NA other downstream 1027418 31140597 ~ 31141090 (+)
G1727146 NA other downstream 1336217 31449396 ~ 31450117 (+)

Expression


Co-expression Network