LOC110500214 (cssa17h12orf56)


Basic Information

Item Value
gene id LOC110500214
gene name cssa17h12orf56
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30131073 ~ 30135545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038434.1
ctgtgccagggGAATATCCTCCCTCTTCACTGCACTCTCACTTTGCCCCCTGGTGGGATAACACAGCATGACCTTGCTGTCCTGCCACGACCATGATACGTTACCACAGTTCAACTTACTCTGAGTTGTGTAATGTGGCTCAAATTGTGTGTGGGTTTAACTAGGTAAGGTGTCTGGGTGTGTTTCTGACACAGTCACACGGACtgtaccatctctctgtctccccagtaGGAACACCCCATCTACCCCATCCAGTAACCTCagccctccactctccctctttctctccctccccccgggTAACTGGACCCAGAGGCCCCCGGAGGCCCTTTGTGTGCCTGGAGGAGAGGCTTGGTGCTGGCTCGCctgctgaagagagagagggtggtcagagagcaggatggagagaaggatgaagatgggggaggagagagagaggcggagctGCATCTGGACGCTTTGTCGCCTACGTCTCGGATCTACCTGCACCTGCAAATCTCCTGGAACAGTTACATTATAAGGTCGACGTTGCTGTTGGACCCCCTCTACAGAAGGAGATGCAATGTCATGTTGAACACCTCAACACAGAAACAACCCCCAATTAGTTGGGAGCGTACAGCCCACCTGTTCCTCCAGCTGAGTGGTGATTTGCTTGAGGAGGGCATCAGTCTGGAGAGCCTATATCTGCTCCTCCAGGAGTTCTGCAATGCAGAATCACCTGCAGGAAACTCTTCTGGAGGGTGAGATCACAgggatctttgtgtgtgtgtgtttgtttctgtgactTTCTGTGTCCTGCTTTCTCCAtacataactgtgtgtgtgttagtccaaTGACATGTTTCCATTCCTGGTGCGGATGCTGGAACAGGCTGGAGACCAATACAGCAGACAGCCTACTGCTGTGTACTCTGATCGCTCAGATCCTGGCCTTGACGTTCAGGGATCGAGCAGGCTCGACTCAACATGCTTACGGTCAagcaGTAATATGTGAAGCGGCCTTGTGTAGAGGAGAAGTTGACCCCCGATTACCCATCAGCCAGCCTGATTTTCGCCTTGTCTCTCAACTGCTGGGACTTATCATACAGAATTCCTGACCACAAACACTACATGCATTTCCTTGATTCATAGACAGATGTACTTATTCTCATGTGTTTTTAGAATTATACTGTATATCAGGGTTTCACAAACTATGGGTCGGGACTTAAAGTGGGCCCTGTGCATGTGAGATGTGGTTAGTGAGATATGAGAATACATCTACAATCACACTGTATTTCTTAATTTGGGTCGTTGGAGGACAATTTGGGTCACAGAGGAAGGTCAACTGGACATATACTCTATTAAAAACTCTCACAGACATAGGGACAGGACATTGCTCTGGGAAAGTGTACCTTTGTCTGAGTGGTGTGTGGTTTCTGAAGGACCTTAGAAGTTTCCCTCCTGTGTGGTTGGGTACTGTACATACTTGTGTTTATGTCTTTGCACTTGGTGAGATGTACGATGCGAGGCATctcactcttctcttctctcctacaCACGGCCTTGTTCTCAGGTTAACTGTCATGTAAATGGCAGTCAGAATGGTCAGATTGGTCGCAATAAAATGTATGAATTTAATCAAGGTACTGCACATCTCACTTTCTAGGATATTCAGCTTACACTAGAAATAATAAATATTCCACTTGTTGAGCAAAAGGCATGTTCTACCGATGTACCTTATTACTGATATAGGCCTACTGATTTGTAAGACCTTGTGTGCAGTATTTACTTAGACACATTATCGTTTTGATTCAGAATTGAATGCATTTATTTAGATTTGATTGTGTATCATCATCTTACTCTCTGTGAGCGAAGGATTGTAACCAAAGGTTTTCTAGAACTCGACCTTGGTAAATGGCCTAAAATAAAGTTACTATCCAGCTCTATTGTTTATATCTTGTGTTGTCCAGCTTCACGGGAGACAACATCCATAACATTTGGAAATAAAACCTATATGTTATGTCATGTCCCC

Function

NR:

description
uncharacterized protein C12orf56 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038434.1 True 2011 mRNA 0.46 5 30131073 30135545

Neighbor

gene id symbol gene type direction distance location
LOC110501059 LOC106609213 coding upstream 17894 30099370 ~ 30113179 (+)
cin cin coding upstream 55893 30073447 ~ 30075203 (+)
LOC110500210 LOC106609211 coding upstream 121487 30002404 ~ 30009586 (+)
LOC110500209 LOC106609209 coding upstream 129019 29993445 ~ 30002054 (+)
LOC110500208 LOC106609208 coding upstream 138017 29980884 ~ 29993056 (+)
LOC110500213 LOC106609216 coding downstream 81 30135626 ~ 30138363 (+)
LOC110500212 cr3l2 coding downstream 3528 30139073 ~ 30166652 (+)
LOC110501060 LOC106576074 coding downstream 33934 30169479 ~ 30218776 (+)
LOC110500216 LOC106609220 coding downstream 128554 30264099 ~ 30410281 (+)
LOC110500929 rs3a coding downstream 408845 30544390 ~ 30545166 (+)
G1725438 NA non-coding upstream 11 30130753 ~ 30131062 (+)
G1725436 NA non-coding upstream 1943 30128864 ~ 30129130 (+)
G1725432 NA non-coding upstream 6189 30124673 ~ 30124884 (+)
G1725360 NA non-coding upstream 171782 29959083 ~ 29959291 (+)
G1725440 NA non-coding downstream 8241 30143786 ~ 30181651 (+)
G1725464 NA non-coding downstream 66053 30201598 ~ 30203607 (+)
G1725474 NA non-coding downstream 90425 30225970 ~ 30226172 (+)
G1725475 NA non-coding downstream 91126 30226671 ~ 30226875 (+)
G1725312 LOC106576088 other upstream 239116 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 871144 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 916790 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 1787339 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 1806456 28311018 ~ 28335924 (+)
G1726209 LOC106609221 other downstream 446457 30582002 ~ 30590636 (+)
G1726222 NA other downstream 469755 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 746298 30881776 ~ 30889293 (+)
G1726863 NA other downstream 1005052 31140597 ~ 31141090 (+)
G1727146 NA other downstream 1313851 31449396 ~ 31450117 (+)

Expression


Co-expression Network