LOC110500213 (LOC106609216)


Basic Information

Item Value
gene id LOC110500213
gene name LOC106609216
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30135626 ~ 30138363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577430.2
GTCCTATTGCCTTCTACAATGAATCACGGACTTATATTAGCGACGGACCGGAAGCAGCGTGCACTTAAGGATTTCGGTTACTGCATCATTCTGTCTACTTTACTATCATACAGTCCGTCCAGCAAACAACGAGGATGTTGAGAAACGGAGCAGCACAGGTTTTCAGACAGCTGGTCAGACACCAGTCTACAGACACCAGCCTGATCCTGGAGAGATcgattaACCGTGTTCAGCTGCTGGGCCGCGTGGGGCAGGACCCTGTCATGAGACAGGTGGAGGGACGGAACCCCGTTACCATCTTCTCCATGGCAACCAACGAGATGTGGCGCTCCGGGGACGTGGAGACGTCTCCCGCAGGAGATGTCAGCCAGAAGACGACGTGGCATCGTGTGTCAATCTTCAAGCCTGGTCTGAGGGATGTGGCGTACCAGTATGTCAAGAAAGGGTCGAGGGTTTTGGTGGAGGGGAAGTTGGACTACGGTGAGTACGTAGACAAGAACAACGTCAGACGCCAGGCTACCACCATCATCGCAGACAACATTGTATTTTTAAGCGACAACATTCGAGGGAAGGATCAATGAGGGATGTGGCGATCTTCATCTAGGAGGAAGACTGAAGCTCTTTCTGTGTAGCTACTCTATTGTCTATATATTAACTGACCGTGGAAGAAGCTGTGTGCCTGCTATCTAAATGGGACAGAACACAGTGTAACACCTCTCTGTTGATTGTAGTGAATGATAGAGGACTATCTGTTCCATTATGACGTCGGTGAGCGCACGGGCAGCGCCATTGaagccatctccattttgaagtagtcaattttcttatactacttctatgagttggtaaacaaactgaaatggttcatACTGCCAACTGGAATGCGTTGTTTGAACAGGTGTAAAGCCAAGTGgagatttactgccacctgcagttatggaatgttcgCTCGTGAgaataattcattggctgatgccctggatggaattatgtgatccttccttaacccataggaggtaccacccagttgactacttcaaaatggtgaaagtcctcaatggcactgcccatgctaaaacatgCTTATGGTTACTAAAGTCCTCTCATTCTCTGAGCGCGCCAGAGTATACCTAGACATGGGGTCACATGTATGTATTCTATCCCCCAAAATGTTTGTTACTACTGTATAATCTTAGTTTACGTCCATTTGCGCTACTCTTGTTGCAGTACTACTAATGGAACTGCTGTTCAAAGCAGAGCGAAGGATCAGGCCTTAAAGGTGAGCAGTTAGTTGTTTTCCCAGAGAAGCCAGATAACAGATGAGAGAAATAAATGGGTGATGTGTGACTGACTCTCATCCACATAATGCTGTACCCCAAACTAGGATTATGTGCCAGTTTCAAATAGAATGTTATACCACCTGTTTTCATCTCAGCATGTCTTTCTGTTCTATTTTAAAGATAGATTGAAACTTGTAACTATTTGTTTAGTTTTGGTTTCATTCCACCTTAGTTTTTTTTCCCCTTCCTGAAATCACCAGATTCTCATCTCAATTCTGTCTGGGCAAAGTTTGTACTCATGTTGTTTAATGTACTTGTATGTATCATGTAggtagaatatatattttttctccagTA
>XM_021577431.2
TGAATCACGGACTTATATTAGCGACGGACCGGAAGCAGCGTGCACTTAAGGATTTCGGTTACTGCATCATTCCGTCCAGCAAACAACGAGGATGTTGAGAAACGGAGCAGCACAGGTTTTCAGACAGCTGGTCAGACACCAGTCTACAGACACCAGCCTGATCCTGGAGAGATcgattaACCGTGTTCAGCTGCTGGGCCGCGTGGGGCAGGACCCTGTCATGAGACAGGTGGAGGGACGGAACCCCGTTACCATCTTCTCCATGGCAACCAACGAGATGTGGCGCTCCGGGGACGTGGAGACGTCTCCCGCAGGAGATGTCAGCCAGAAGACGACGTGGCATCGTGTGTCAATCTTCAAGCCTGGTCTGAGGGATGTGGCGTACCAGTATGTCAAGAAAGGGTCGAGGGTTTTGGTGGAGGGGAAGTTGGACTACGGTGAGTACGTAGACAAGAACAACGTCAGACGCCAGGCTACCACCATCATCGCAGACAACATTGTATTTTTAAGCGACAACATTCGAGGGAAGGATCAATGAGGGATGTGGCGATCTTCATCTAGGAGGAAGACTGAAGCTCTTTCTGTGTAGCTACTCTATTGTCTATATATTAACTGACCGTGGAAGAAGCTGTGTGCCTGCTATCTAAATGGGACAGAACACAGTGTAACACCTCTCTGTTGATTGTAGTGAATGATAGAGGACTATCTGTTCCATTATGACGTCGGTGAGCGCACGGGCAGCGCCATTGaagccatctccattttgaagtagtcaattttcttatactacttctatgagttggtaaacaaactgaaatggttcatACTGCCAACTGGAATGCGTTGTTTGAACAGGTGTAAAGCCAAGTGgagatttactgccacctgcagttatggaatgttcgCTCGTGAgaataattcattggctgatgccctggatggaattatgtgatccttccttaacccataggaggtaccacccagttgactacttcaaaatggtgaaagtcctcaatggcactgcccatgctaaaacatgCTTATGGTTACTAAAGTCCTCTCATTCTCTGAGCGCGCCAGAGTATACCTAGACATGGGGTCACATGTATGTATTCTATCCCCCAAAATGTTTGTTACTACTGTATAATCTTAGTTTACGTCCATTTGCGCTACTCTTGTTGCAGTACTACTAATGGAACTGCTGTTCAAAGCAGAGCGAAGGATCAGGCCTTAAAGGTGAGCAGTTAGTTGTTTTCCCAGAGAAGCCAGATAACAGATGAGAGAAATAAATGGGTGATGTGTGACTGACTCTCATCCACATAATGCTGTACCCCAAACTAGGATTATGTGCCAGTTTCAAATAGAATGTTATACCACCTGTTTTCATCTCAGCATGTCTTTCTGTTCTATTTTAAAGATAGATTGAAACTTGTAACTATTTGTTTAGTTTTGGTTTCATTCCACCTTAGTTTTTTTTCCCCTTCCTGAAATCACCAGATTCTCATCTCAATTCTGTCTGGGCAAAGTTTGTACTCATGTTGTTTAATGTACTTGTATGTATCATGTAggtagaatatatattttttctccagTA

Function

NR:

description
single-stranded DNA-binding protein, mitochondrial-like

GO: NA

KEGG:

id description
K03111 ssb; single-strand DNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577430.2 False 1637 mRNA 0.45 6 30135626 30138363
XM_021577431.2 True 1594 mRNA 0.45 6 30135645 30138363

Neighbor

gene id symbol gene type direction distance location
LOC110500214 cssa17h12orf56 coding upstream 81 30131073 ~ 30135545 (+)
LOC110501059 LOC106609213 coding upstream 22447 30099370 ~ 30113179 (+)
cin cin coding upstream 60446 30073447 ~ 30075203 (+)
LOC110500210 LOC106609211 coding upstream 126040 30002404 ~ 30009586 (+)
LOC110500209 LOC106609209 coding upstream 133572 29993445 ~ 30002054 (+)
LOC110500212 cr3l2 coding downstream 710 30139073 ~ 30166652 (+)
LOC110501060 LOC106576074 coding downstream 31116 30169479 ~ 30218776 (+)
LOC110500216 LOC106609220 coding downstream 125736 30264099 ~ 30410281 (+)
LOC110500929 rs3a coding downstream 406027 30544390 ~ 30545166 (+)
LOC110500218 tnni1 coding downstream 580217 30718580 ~ 30725274 (+)
G1725438 NA non-coding upstream 4564 30130753 ~ 30131062 (+)
G1725436 NA non-coding upstream 6496 30128864 ~ 30129130 (+)
G1725432 NA non-coding upstream 10742 30124673 ~ 30124884 (+)
G1725360 NA non-coding upstream 176335 29959083 ~ 29959291 (+)
G1725440 NA non-coding downstream 5423 30143786 ~ 30181651 (+)
G1725464 NA non-coding downstream 63235 30201598 ~ 30203607 (+)
G1725474 NA non-coding downstream 87607 30225970 ~ 30226172 (+)
G1725475 NA non-coding downstream 88308 30226671 ~ 30226875 (+)
G1725312 LOC106576088 other upstream 243669 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 875697 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 921343 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 1791892 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 1811009 28311018 ~ 28335924 (+)
G1726209 LOC106609221 other downstream 443639 30582002 ~ 30590636 (+)
G1726222 NA other downstream 466937 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 743480 30881776 ~ 30889293 (+)
G1726863 NA other downstream 1002234 31140597 ~ 31141090 (+)
G1727146 NA other downstream 1311033 31449396 ~ 31450117 (+)

Expression


Co-expression Network