LOC110500212 (cr3l2)


Basic Information

Item Value
gene id LOC110500212
gene name cr3l2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30139073 ~ 30166652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577428.2
AGAAAATAAACAAGAGCCAACACGGGGCAGTCTTCTTCTAACGCTATTTTTCACCTTTAATATTGTAATTCGGAGATAACTGATTTGTTGGCAGCACTGCTGCGTATATTACGGCGTTGTAGTTACATCAACTGCATAACTACGTTTCTTCACTGAAGTTGAATTAACTGCGTGGACAGAGTAAAAACATAACATTCTTCGGTTGATATCGCTGTAAAGTGTGTGAAGGAGAGTATTTGCTATCTGCGCTGCAAAGTATCATCATCAAGGGAACTGTCATCTAACGACACATTAGGAATCAGAGCGGTCGCATCGCCAAGGATGGAAATATTGGACAGTACTGAGTCCTTTTTACACTGGGATAGGAATCTCAGTGAGCTCTCGGAGCCTGGAGAAAACGAACATGTCTTATACAGCACACACTTCACAGACCTCCTGGATGACTTTTCCCAGGATGCTTTGCTGGGCCAGCTGCTGAGCGACCCCTTCCTCTCCGGCCGGGAAGGAGAGGCCATGGACGAGGGGGAGGATTTTACCCCGTCCTCCCCGCTGCCGCCCCACATCCAGGCGGAGCACTCCTACTCCCTGTGTGGGGACTCCCGGCCCCAGTCGCCCGTCTCACATCTGCCTGGGGAGCAGGGGAGCGATGCAGAATCAGATGGTGAGGATTGGTCCCTGGAGCAGGAGGAACAGATGGAGGTGTTGCTGTGTGACCCTCCAGCCCTGCTGCCCACCCTAACCCTCTCCCTGGCCCCTGAGGGCCACATCACTGAGGCCCCGGCCCCACCAGCCCCCAAGCCCAACCCACAGACCGCCACACAGGGCAAGGCCAGCAAGGCGAAGGAGATTGGTGAGATCCAGATCAAACTGGAGCCTCATGAAGTGGACCAGTTCCTTAACTTGTCTCCTAAAGGTCTGGAGTCTCTGCAGATgccacccacccctccctcctcccacggCAGTGACTCCGAGGGCAGTCAGAGCCCGGTACACGCCAGCACCCCCCAGagcccctccaccccctcctctcccctcagccctgcGCCCTCCCAGGCCGGCCTCAAGGTGTCTCAGCGcacaccctcctccctctccaactCCCCTCTTCTCACCGCCCCACACAAGTTGCAGGGCTCTGGCCCTCTCAtgctgacagaggaagagaggagaacccTGGTTGCAGAGGGTTACCCTGTTCCCACCAAGCTGCCCCTGTCCAAGGCGGAGGAGAAAGCCCTGAAGAAGATACGCAGGAAGATCAAGAACAAGATCTCTGCTCAAGAGAGCCGCAGAAAGAAGAAGGAGTACATGGACGCCCTGGAGAAGAAGGTGGAGAACTGCTCCAATGAGAACAGCGAGCTGCGCAGGAAACTGGAGAATCTGGAGTGTACCAACAAGACTCTAATACAACAGCTGCACTCTCTGCAGGCGGTGGTGGCAGGGAAGGTTCCCCGCTCCTGCAAAGTCACTGGCACCCAGACCTCCTCCTGCCTCATGGTAGTGGTGCTGTGCTTCGCTGTGTTCCTAGGGAGTTTCTACCCCAGCCTGGGTCCCTGCTCCTCCATCACAGAGACTGGCCTCTCCAGAGACATGGCCATGCAGGAGTCTTACACAGCTAcagTGAAGTCCAGGAGCCTGCTGTCCtatgaggagagagggctagacgAGCCACACCTTCTGGGTCTGGGCGGGGACTATCCTGACCAGTTGGAGAGGCCCACGGTCGTCATGGCAGCGTGGCGCTCTGAGAAAAAGCAGCAGAAAGGGGAGGAGTCACACCGTGCTGAGACACGCTCACCTTTCAACAACAGTGATGCGAATCCACAGAAACCCCTGCTATTAGACCTGCAcagGTCTCTGGAGCAGAGGGTGAACGACAGCACTAAAATCATAGAGCTGGAGAGAACGGTCAACGAGACGTCATAGGGCTCTACCTCTGACTCCTCACCCCTGACCTTCGACCTTCCCTCTGCAGGCGCAGGAGACGGAGGCTCTCTGTATTTATAGAATCCTTTTTTTGATATCTTTATTATTTTATCGTATGTAGTTGTTGTTCTTTTTATATTGTGTTTTTATTCCATTCCAATAGTACCACCGCCGTCTGATATATTTTTGTGTTCATGCTTTGTTTCTATTTTGCCTTTTATTTGCTTTACTTCTTTATATATTTGAGGACATGCTTTGCTCTGGCCATTATGCTCTGTTACATTTGAGTGAGTGGTATTTCGTTCTGTATCTCTATGGTGATATTCCCCTCCATGTGATGGTGGTGTTATGAGGATGGGGCCGCGGAGGTCTGTGAATACTCGACTGTCTTCTTCACAGTGATGGGGCTTTCTATCTCAAATGCTATTTCCTTTCCGTATTGGTTTCCTGTCGATATTTTTTTTTCAGGATGGATTCAGAATAGCACACTGTGTCCTTAAATATGAGTATCTGTCAAAAGCCAAAGGTCTTCGTAGCGAACCCTATTTTTGTAAATGTAAATAATAACAATGTAATAGTCAGCCTACATGTGTGCGGTCAGTAAAAACAATGTTGACGGACGTTGATCGATGGTTGGATGTTGAGACAATCAAGCTTTATAATACAGCCTTATGACACAGTACTTTTTATACCGGATAATGTGTGTAGGGAATGTGTTGTTTCCTAAACTAAGATACGTTCCTGCTGGAGAAAACACAATGGTGGCCTTGTGAAATGTAATGAACCACTATGAGGTTTCTGCTAGGTCATAGTCTCCGTACCACCTGCGCTGTCTCACACAGATGAATAGAGCCATACGCGCCTTCCCCATTGGCCTGCACCCTGCCGTCAATCCACTCGTACTGTGTCCCCCAAAGAGTCCATTGTCATTCTTAtttattgtatataaactgttgagTCACATTTTTGCCTCCACAGGACCTATATTTGTCTTTTATGGGTTCTCTTTTTTGGTTTTTGATtaaaacaaataaatattttCCGTAGTAAAAGCATCAA
>XM_021577429.2
CTTTAATATTGTAATTCGGAGATAACTGATTTGTTGGCAGCACTGCTGCGTATATTACGGCGTTGTAGTTACATCAACTGCATAACTACGTTTCTTCACTGAAGTTGAATTAACTGCGTGGACAGAGTAAAAACATAACATTCTTCGGTTGATATCGCTGTAAAGTGTGTGAAGGAGAGTATTTGCTATCTGCGCTGCAAAGTATCATCATCAAGGGAACTGTCATCTAACGACACATTAGGAATCAGAGCGGTCGCATCGCCAAGGATGGAAATATTGGACAGTACTGAGTCCTTTTTACACTGGGATAGGAATCTCAGTGAGCTCTCGGAGCCTGGAGAAAACGAACATGTCTTATACAGCACACACTTCACAGACCTCCTGGATGACTTTTCCCAGGATGCTTTGCTGGGCCAGCTGCTGAGCGACCCCTTCCTCTCCGGCCGGGAAGGAGAGGCCATGGACGAGGGGGAGGATTTTACCCCGTCCTCCCCGCTGCCGCCCCACATCCAGGCGGAGCACTCCTACTCCCTGTGTGGGGACTCCCGGCCCCAGTCGCCCGTCTCACATCTGCCTGGGGAGCAGGGGAGCGATGCAGATGGTGAGGATTGGTCCCTGGAGCAGGAGGAACAGATGGAGGTGTTGCTGTGTGACCCTCCAGCCCTGCTGCCCACCCTAACCCTCTCCCTGGCCCCTGAGGGCCACATCACTGAGGCCCCGGCCCCACCAGCCCCCAAGCCCAACCCACAGACCGCCACACAGGGCAAGGCCAGCAAGGCGAAGGAGATTGGTGAGATCCAGATCAAACTGGAGCCTCATGAAGTGGACCAGTTCCTTAACTTGTCTCCTAAAGGTCTGGAGTCTCTGCAGATgccacccacccctccctcctcccacggCAGTGACTCCGAGGGCAGTCAGAGCCCGGTACACGCCAGCACCCCCCAGagcccctccaccccctcctctcccctcagccctgcGCCCTCCCAGGCCGGCCTCAAGGTGTCTCAGCGcacaccctcctccctctccaactCCCCTCTTCTCACCGCCCCACACAAGTTGCAGGGCTCTGGCCCTCTCAtgctgacagaggaagagaggagaacccTGGTTGCAGAGGGTTACCCTGTTCCCACCAAGCTGCCCCTGTCCAAGGCGGAGGAGAAAGCCCTGAAGAAGATACGCAGGAAGATCAAGAACAAGATCTCTGCTCAAGAGAGCCGCAGAAAGAAGAAGGAGTACATGGACGCCCTGGAGAAGAAGGTGGAGAACTGCTCCAATGAGAACAGCGAGCTGCGCAGGAAACTGGAGAATCTGGAGTGTACCAACAAGACTCTAATACAACAGCTGCACTCTCTGCAGGCGGTGGTGGCAGGGAAGGTTCCCCGCTCCTGCAAAGTCACTGGCACCCAGACCTCCTCCTGCCTCATGGTAGTGGTGCTGTGCTTCGCTGTGTTCCTAGGGAGTTTCTACCCCAGCCTGGGTCCCTGCTCCTCCATCACAGAGACTGGCCTCTCCAGAGACATGGCCATGCAGGAGTCTTACACAGCTAcagTGAAGTCCAGGAGCCTGCTGTCCtatgaggagagagggctagacgAGCCACACCTTCTGGGTCTGGGCGGGGACTATCCTGACCAGTTGGAGAGGCCCACGGTCGTCATGGCAGCGTGGCGCTCTGAGAAAAAGCAGCAGAAAGGGGAGGAGTCACACCGTGCTGAGACACGCTCACCTTTCAACAACAGTGATGCGAATCCACAGAAACCCCTGCTATTAGACCTGCAcagGTCTCTGGAGCAGAGGGTGAACGACAGCACTAAAATCATAGAGCTGGAGAGAACGGTCAACGAGACGTCATAGGGCTCTACCTCTGACTCCTCACCCCTGACCTTCGACCTTCCCTCTGCAGGCGCAGGAGACGGAGGCTCTCTGTATTTATAGAATCCTTTTTTTGATATCTTTATTATTTTATCGTATGTAGTTGTTGTTCTTTTTATATTGTGTTTTTATTCCATTCCAATAGTACCACCGCCGTCTGATATATTTTTGTGTTCATGCTTTGTTTCTATTTTGCCTTTTATTTGCTTTACTTCTTTATATATTTGAGGACATGCTTTGCTCTGGCCATTATGCTCTGTTACATTTGAGTGAGTGGTATTTCGTTCTGTATCTCTATGGTGATATTCCCCTCCATGTGATGGTGGTGTTATGAGGATGGGGCCGCGGAGGTCTGTGAATACTCGACTGTCTTCTTCACAGTGATGGGGCTTTCTATCTCAAATGCTATTTCCTTTCCGTATTGGTTTCCTGTCGATATTTTTTTTTCAGGATGGATTCAGAATAGCACACTGTGTCCTTAAATATGAGTATCTGTCAAAAGCCAAAGGTCTTCGTAGCGAACCCTATTTTTGTAAATGTAAATAATAACAATGTAATAGTCAGCCTACATGTGTGCGGTCAGTAAAAACAATGTTGACGGACGTTGATCGATGGTTGGATGTTGAGACAATCAAGCTTTATAATACAGCCTTATGACACAGTACTTTTTATACCGGATAATGTGTGTAGGGAATGTGTTGTTTCCTAAACTAAGATACGTTCCTGCTGGAGAAAACACAATGGTGGCCTTGTGAAATGTAATGAACCACTATGAGGTTTCTGCTAGGTCATAGTCTCCGTACCACCTGCGCTGTCTCACACAGATGAATAGAGCCATACGCGCCTTCCCCATTGGCCTGCACCCTGCCGTCAATCCACTCGTACTGTGTCCCCCAAAGAGTCCATTGTCATTCTTAtttattgtatataaactgttgagTCACATTTTTGCCTCCACAGGACCTATATTTGTCTTTTATGGGTTCTCTTTTTTGGTTTTTGATtaaaacaaataaatattttCCGTAGTAAAAGCATCAA
>TU1976574
CCTGCATGCTCTGTGTGTCAGCTGTTGTGGGCAGACTATCTTGTCCTTTTCATGTAAATGCTTGACTGTGGAGCCTACTGACATATCGGGGGTGTGTGTCTAGGTAGTGGTGCTGTGCTTCGCTGTGTTCCTAGGGAGTTTCTACCCCAGCCTGGGTCCCTGCTCCTCCATCACAGAGACTGGCCTCTCCAGAGACATGGCCATGCAGGAGTCTTACACAGCTAcaggtactgtacacacacacacacacacagtcagtcagtcagtcagtcatacgtTGCACATTCATGTTTCATGGATTAATGCTGATCTTTTTATAGTGTGTGTGCGAGCGAGGCATTAGCTCTGAATCTCTGAGTGCTGAGGGACTAGCAGTGTTCTGTAATCctaccagtcacacacacacacacctttttttgaGTGTTTTGGCGTGGCCTCCTGGAAGAGTGTACACTTGAATGTCGTCGTTTCCCATTCAGCGGGACTATCATTAGCATGATTAAGCTGCAATGCAGCCATTTTAATGATGACTGATCTTTGCTCCCCCTACCGCTcttctccctcccacacacagccTGTTTGCCACAGAGCCCAGTATCAGTGTTGCTGGCAGTCCGccctacagtagaacagtctGGATGTAGGCTATGTACAGAGCAAGGTTTACTGTTGGTAGGGTtgggttgtttttttttgtgtgtaatcCTTTTCATGAGACTTCATTTGTAAATCTTGTTAAGAGGGTTGCAGGGATGTAGGATTGCATTAGTAGTAGACTTGATCATATCAAAGGATTATACCGGCCCTAAAAACCAAAAGACATTTCAACAAGGGAATATGTAAAAGATTAAGGTAGGCATGTCATTGAGTACTTTCTCCTTTCTGGACATGATGTGATCAgacaggtgtttttttttttaaatatatatatatttttttacccatgATCCTTCACAGTGAAGTCCAGGAGCCTGCTGTCCtatgaggagagagggctagacgAGCCACACCTTCTGGGTCTGGGCGGGGACTATCCTGACCAGTTGGAGAGGCCCACGGTCGTCATGGCAGCGTGGCGCTCTGAGAAAAAGCAGCAGAAAGGGGAGGAGTCACACCGTGCTGAGACACGCTCACCTTTCAACAACAGTGATGCGAATCCACAGAAACCCCTGCTATTAGACCTGCAcagGTCTCTGGAGCAGAGGGTGAACGACAGCACTAAAATCATAGAGCTGGAGAGAACGGTCAACGAGACGTCATAGGGCTCTACCTCTGACTCCTCACCCCTGACCTTCGACCTTCCCTCTGCAGGCGCAGGAGACGGAGGCTCTCTGTATTTATAGAATCCTTTTTTTGATATCTTTATTATTTTATCGTATGTAGTTGTTGTTCTTTTTATATTGTGTTTTTATTCCATTCCAATAGTACCACCGCCGTCTGATATATTTTTGTGTTCATGCTTTGTTTCTATTTTGCCTTTTATTTGCTTTACTTCTTTATATATTTGAGGACATGCTTTGCTCTGGCCATTATGCTCTGTTACATTTGAGTGAGTGGTATTTCGTTCTGTATCTCTATGGTGATATTCCCCTCCATGTGATGGTGGTGTTATGAGGATGGGGCCGCGGAGGTCTGTGAATACTCGACTGTCTTCTTCACAGTGATGGGGCTTTCTATCTCAAATGCTATTTCCTTTCCGTATTGGTTTCCTGTCGATATTTTTTTTTCAGGATGGATTCAGAATAGCACACTGTGTCCTTAAATATGAGTATCTGTCAAAAGCCAAAGGTCTTCGTAGCGAACCCTATTTTTGTAAATGTAAATAATAACAATGTAATAGTCAGCCTACATGTGTGCGGTCAGTAAAAACAATGTTGACGGACGTTGATCGATGGTTGGATGTTGAGACAATCAAGCTTTATAATACAGCCTTATGACACAGTACTTTTTATACCGGATAATGTGTGTAGGGAATGTGTTGTTTCCTAAACTAAGATACGTTCCTGCTGGAGAAAACACAATGGTGGCCTTGTGAAATGTAATGAACCACTATGAGGTTTCTGCTAGGTCATAGTCTCCGTACCACCTGCGCTGTCTCACACAGATGAATAGAGCCATACGCGCCTTCCCCATTGGCCTGCACCCTGCCGTCAATCCACTCGTACTGTGTCCCCCAAAGAGTCCA

Function

NR:

description
cyclic AMP-responsive element-binding protein 3-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577428.2 False 2985 mRNA 0.50 12 30139073 30166652
XM_021577429.2 False 2925 mRNA 0.50 12 30139127 30166652
TU1976574 True 2185 lncRNA 0.45 2 30164176 30166516

Neighbor

gene id symbol gene type direction distance location
LOC110500213 LOC106609216 coding upstream 710 30135626 ~ 30138363 (+)
LOC110500214 cssa17h12orf56 coding upstream 3528 30131073 ~ 30135545 (+)
LOC110501059 LOC106609213 coding upstream 25894 30099370 ~ 30113179 (+)
cin cin coding upstream 63893 30073447 ~ 30075203 (+)
LOC110500210 LOC106609211 coding upstream 129487 30002404 ~ 30009586 (+)
LOC110501060 LOC106576074 coding downstream 2827 30169479 ~ 30218776 (+)
LOC110500216 LOC106609220 coding downstream 97447 30264099 ~ 30410281 (+)
LOC110500929 rs3a coding downstream 377738 30544390 ~ 30545166 (+)
LOC110500218 tnni1 coding downstream 551928 30718580 ~ 30725274 (+)
LOC110500219 LOC105029072 coding downstream 583358 30750010 ~ 30807982 (+)
G1725438 NA non-coding upstream 8011 30130753 ~ 30131062 (+)
G1725436 NA non-coding upstream 9943 30128864 ~ 30129130 (+)
G1725432 NA non-coding upstream 14189 30124673 ~ 30124884 (+)
G1725360 NA non-coding upstream 179782 29959083 ~ 29959291 (+)
G1725464 NA non-coding downstream 34946 30201598 ~ 30203607 (+)
G1725474 NA non-coding downstream 59318 30225970 ~ 30226172 (+)
G1725475 NA non-coding downstream 60019 30226671 ~ 30226875 (+)
G1725481 NA non-coding downstream 79889 30246541 ~ 30246855 (+)
G1725840 NA non-coding downstream 130161 30296813 ~ 30297582 (+)
G1725312 LOC106576088 other upstream 247116 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 879144 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 924790 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 1795339 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 1814456 28311018 ~ 28335924 (+)
G1726209 LOC106609221 other downstream 415350 30582002 ~ 30590636 (+)
G1726222 NA other downstream 438648 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 715191 30881776 ~ 30889293 (+)
G1726863 NA other downstream 973945 31140597 ~ 31141090 (+)
G1727146 NA other downstream 1282744 31449396 ~ 31450117 (+)

Expression


Co-expression Network