LOC110500929 (rs3a)


Basic Information

Item Value
gene id LOC110500929
gene name rs3a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30544390 ~ 30545166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578435.2
ATGGCAGTCGGCAAGAATAAGAGGCTGACCAAAGGTATCAAAAAAGGTGCAACAAAGAAGATTGTCGACCCTTTCTCCAAGAAGGGCTGGTATGATGTCAAGGCACACGCTAGGTTCAACAGCCGCAACATTGGCCAGACATTGGTCTCCAGGACTCAGGGAACCAGAATCACCTCTGATGGTCTGAAGGGGTGTGTGTTTGAGGTGAGCCTTGCTGACCTGCAGAACGATAAGGTGGCCTTCCGCAAGTTCAAACTGATATCAGACGACGTGCAGGGTAAGAACTGCCTGACCCTGGACAAGATGTGCTCCATGGTCAAGAAGTGCCAGACCATGATTGAGGCCCACTTGGACATGAAGACCACCGACGGCTACCTCCTGCGCCTGTTCTGCTTTGGCTTCACCAAGAAGCGCCCCAACCAGATCAGAAAGATGTCGTACGCCCAGCACCAGCAGGTCTGTCAGATCAGGAAGAAGACGATGGAGATCATGACCCGTGAGGTCCAGACCGACGACCTGAAGGAAATCTTCAACAAGCTTATCCCTGACTCCGTTGGCAATGACATTGTGAAGGCCTGCCAGTCCATCTACCCCCTCCACGATATCTACGTCAGTAAGGTTAAGATGCTGAAGAAGTGCAAGTTTGAGTTAGGCAAACTGATGGAGCTCCACGGTGAGGGTGGTGGCAGAAGTACAGCCAAGCCCTCAGGGGATGACATCAGAGCTAAGGTGGAAAGGGCCGATGGCTACGAGCCCCCCATCCAGGAGACAGTCTAA

Function

NR:

description
40S ribosomal protein S3a-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578435.2 True 777 mRNA 0.53 1 30544390 30545166

Neighbor

gene id symbol gene type direction distance location
LOC110500216 LOC106609220 coding upstream 134109 30264099 ~ 30410281 (+)
LOC110501060 LOC106576074 coding upstream 325614 30169479 ~ 30218776 (+)
LOC110500212 cr3l2 coding upstream 377738 30139073 ~ 30166652 (+)
LOC110500213 LOC106609216 coding upstream 406027 30135626 ~ 30138363 (+)
LOC110500214 cssa17h12orf56 coding upstream 408845 30131073 ~ 30135545 (+)
LOC110500218 tnni1 coding downstream 173414 30718580 ~ 30725274 (+)
LOC110500219 LOC105029072 coding downstream 204844 30750010 ~ 30807982 (+)
LOC110500220 tnnt2 coding downstream 262995 30808161 ~ 30821295 (+)
LOC110500223 LOC106609230 coding downstream 296359 30841525 ~ 30851119 (+)
LOC110500930 LOC106609235 coding downstream 326107 30871273 ~ 30877399 (+)
G1726141 NA non-coding upstream 47081 30497077 ~ 30497309 (+)
G1726139 NA non-coding upstream 48798 30495125 ~ 30495592 (+)
G1725817 LOC107575789 non-coding upstream 132774 30411269 ~ 30411616 (+)
G1725840 NA non-coding upstream 246808 30296813 ~ 30297582 (+)
G1725481 NA non-coding upstream 297535 30246541 ~ 30246855 (+)
G1726221 NA non-coding downstream 59540 30604706 ~ 30604907 (+)
G1726232 NA non-coding downstream 79614 30624780 ~ 30624980 (+)
G1726310 NA non-coding downstream 90048 30635214 ~ 30635420 (+)
G1726311 NA non-coding downstream 91200 30636366 ~ 30636579 (+)
G1726330 NA non-coding downstream 107284 30652450 ~ 30652811 (+)
G1725312 LOC106576088 other upstream 652433 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 1284461 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 1330107 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 2200656 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 2219773 28311018 ~ 28335924 (+)
G1726209 LOC106609221 other downstream 36836 30582002 ~ 30590636 (+)
G1726222 NA other downstream 60134 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 336677 30881776 ~ 30889293 (+)
G1726863 NA other downstream 595431 31140597 ~ 31141090 (+)
G1727146 NA other downstream 904230 31449396 ~ 31450117 (+)

Expression


Co-expression Network