LOC110500218 (tnni1)


Basic Information

Item Value
gene id LOC110500218
gene name tnni1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30718580 ~ 30725274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577434.2
AAGGGGCCCTATTTTAGAGAGCCATTCACATGAGGCAGCAGAAGCCATAAATCAATCATTCAAAATCATAAACCGCTTTTTCCTGCACGACATCACTGCTACACGTTCACTCTCTGATTGGCTTCTCTTTTAAAGCAGTACTCATAAACCAGAACAGCCATGTCTGAGGGACCGaaAAAGACAAAGTACTCAGCAACCCGCAGGTTACTGCTGAAGCAAAAGCTACTGAAGAAAGCTGGGGTCTTGCTGGTCCAGGAGCAAAGCAACaaggtgacagagagggagagcaccTTGAGCGAGAGAGTACCACCGCTGAAACTCTCCGGCCTATCTGTGCAAGAGCTTCAGGAGCTCTGTAAGGAACTGCACAGGAAATGTGACACGGTGGATGAGGCACGATACGATATCGAAGCAAAAGTGCTCAAGAATGAGAAAGAGCTCGCGGACCTGAATGCAAAGATCAACGAGCTGAAGGGGGGGAAGCGACCTAACCTCAAGAGGGTCAAGAAGTCTGCCGACGCTATGCTGGGGGCTCTGACTGAGGCCAAACTCAGCTCCAAGTCAGACTTTAAGTCCAACCTGAAGACAGTCAAGAAAgacaagaaggaggaggagAAAGTGGACCCGGGTGACTGGCGGAAGAATGTGGAGTCCATGTCTGGAATGGAGGGCAGGAAGAAGCTTTTCAATAGCTGAAACAGTTACAAATGCACGGGCTCTGTAGAGATCTGTGGCTGCATTACCTGCTTGTTTACTCATTCATATTTAGGATTttcatgaaaatatatttttgcagTGAGATTGTGTGTTTTTGGAGGAAAGTATGAAGTGTGAGGTATTTTACACTAAAGACTATGGGA
>XM_021577435.2
GAGAGCCATTCACATGAGGCAGCAGAAGCCATAAATCAATCATTCAAAATCATAAACCGCTTTTTCCTGCACGACATCACTGCTACACGTTCACTCTCTGATTGGCTTCTCTTTTAAAGTACTCATAAACCAGAACAGCCATGTCTGAGGGACCGaaAAAGACAAAGTACTCAGCAACCCGCAGGTTACTGCTGAAGCAAAAGCTACTGAAGAAAGCTGGGGTCTTGCTGGTCCAGGAGCAAAGCAACaaggtgacagagagggagagcaccTTGAGCGAGAGAGTACCACCGCTGAAACTCTCCGGCCTATCTGTGCAAGAGCTTCAGGAGCTCTGTAAGGAACTGCACAGGAAATGTGACACGGTGGATGAGGCACGATACGATATCGAAGCAAAAGTGCTCAAGAATGAGAAAGAGCTCGCGGACCTGAATGCAAAGATCAACGAGCTGAAGGGGGGGAAGCGACCTAACCTCAAGAGGGTCAAGAAGTCTGCCGACGCTATGCTGGGGGCTCTGACTGAGGCCAAACTCAGCTCCAAGTCAGACTTTAAGTCCAACCTGAAGACAGTCAAGAAAgacaagaaggaggaggagAAAGTGGACCCGGGTGACTGGCGGAAGAATGTGGAGTCCATGTCTGGAATGGAGGGCAGGAAGAAGCTTTTCAATAGCTGAAACAGTTACAAATGCACGGGCTCTGTAGAGATCTGTGGCTGCATTACCTGCTTGTTTACTCATTCATATTTAGGATTttcatgaaaatatatttttgcagTGAGATTGTGTGTTTTTGGAGGAAAGTATGAAGTGTGAGGTATTTTACACTAAAGACTATGGGA
>XM_021577437.2
CCATTCACATGAGGCAGCAGAAGCCATAAATCAATCATTCAAAATCATAAACCGCTTTTTCCTGCACGACATCACTGCTACACGTTCACTCTCTGATTGGCTTCTCTTTTAAAGTGTTGGGAATGTTCTGCCAATAAACCTCTGACCACAGCTATGTTGGCTCCCCAGCAGTACTCATAAACCAGAACAGCCATGTCTGAGGGACCGaaAAAGACAAAGTACTCAGCAACCCGCAGGTTACTGCTGAAGCAAAAGCTACTGAAGAAAGCTGGGGTCTTGCTGGTCCAGGAGCAAAGCAACaaggtgacagagagggagagcaccTTGAGCGAGAGAGTACCACCGCTGAAACTCTCCGGCCTATCTGTGCAAGAGCTTCAGGAGCTCTGTAAGGAACTGCACAGGAAATGTGACACGGTGGATGAGGCACGATACGATATCGAAGCAAAAGTGCTCAAGAATGAGAAAGAGCTCGCGGACCTGAATGCAAAGATCAACGAGCTGAAGGGGGGGAAGCGACCTAACCTCAAGAGGGTCAAGAAGTCTGCCGACGCTATGCTGGGGGCTCTGACTGAGGCCAAACTCAGCTCCAAGTCAGACTTTAAGTCCAACCTGAAGACAGTCAAGAAAgacaagaaggaggaggagAAAGTGGACCCGGGTGACTGGCGGAAGAATGTGGAGTCCATGTCTGGAATGGAGGGCAGGAAGAAGCTTTTCAATAGCTGAAACAGTTACAAATGCACGGGCTCTGTAGAGATCTGTGGCTGCATTACCTGCTTGTTTACTCATTCATATTTAGGATTttcatgaaaatatatttttgcagTGAGATTGTGTGTTTTTGGAGGAAAGTATGAAGTGTGAGGTATTTTACACTAAAGACTATGGGA

Function

symbol description
tnni1 Predicted to enable actin binding activity and metal ion binding activity. Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to act upstream of or within transition between fast and slow fiber and ventricular cardiac muscle tissue morphogenesis. Predicted to be located in cytosol. Predicted to be part of troponin complex.

NR:

description
PREDICTED: troponin I, slow skeletal muscle isoform X1

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577434.2 False 860 mRNA 0.47 8 30718580 30725274
XM_021577435.2 False 841 mRNA 0.47 8 30718596 30725274
XM_021577437.2 True 893 mRNA 0.47 8 30718601 30725274

Neighbor

gene id symbol gene type direction distance location
LOC110500929 rs3a coding upstream 173414 30544390 ~ 30545166 (+)
LOC110500216 LOC106609220 coding upstream 308299 30264099 ~ 30410281 (+)
LOC110501060 LOC106576074 coding upstream 499804 30169479 ~ 30218776 (+)
LOC110500212 cr3l2 coding upstream 551928 30139073 ~ 30166652 (+)
LOC110500213 LOC106609216 coding upstream 580217 30135626 ~ 30138363 (+)
LOC110500219 LOC105029072 coding downstream 24736 30750010 ~ 30807982 (+)
LOC110500220 tnnt2 coding downstream 82887 30808161 ~ 30821295 (+)
LOC110500223 LOC106609230 coding downstream 116251 30841525 ~ 30851119 (+)
LOC110500930 LOC106609235 coding downstream 145999 30871273 ~ 30877399 (+)
LOC110500226 LOC106576059 coding downstream 156502 30881776 ~ 30889293 (+)
G1726353 NA non-coding upstream 47035 30671323 ~ 30671545 (+)
G1726343 NA non-coding upstream 52478 30665650 ~ 30666102 (+)
G1726330 NA non-coding upstream 65769 30652450 ~ 30652811 (+)
G1726311 NA non-coding upstream 82001 30636366 ~ 30636579 (+)
G1726310 NA non-coding upstream 83160 30635214 ~ 30635420 (+)
G1726524 NA non-coding downstream 137314 30862588 ~ 30862794 (+)
G1726553 NA non-coding downstream 218592 30943866 ~ 30944191 (+)
G1726569 NA non-coding downstream 275946 31001220 ~ 31001757 (+)
G1726578 NA non-coding downstream 284306 31009580 ~ 31009866 (+)
G1726587 NA non-coding downstream 295696 31020970 ~ 31021218 (+)
G1726222 NA other upstream 107219 30605300 ~ 30611361 (+)
G1726209 LOC106609221 other upstream 127944 30582002 ~ 30590636 (+)
G1725312 LOC106576088 other upstream 826623 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 1458651 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 1504297 29209169 ~ 29214283 (+)
G1726863 NA other downstream 415323 31140597 ~ 31141090 (+)
G1727146 NA other downstream 724122 31449396 ~ 31450117 (+)
G1727181 NA other downstream 782782 31508056 ~ 31508372 (+)
G1727220 NA other downstream 838861 31564135 ~ 31564594 (+)

Expression


Co-expression Network