LOC110500223 (LOC106609230)


Basic Information

Item Value
gene id LOC110500223
gene name LOC106609230
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30841525 ~ 30851119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957620.1
CGGTACACTCCAGTCCTGTTGGTGGCGGTAGGAAATGTGAAACCACAGCagaagaaaacaaaaagaaaCCGATTGCTACACTGTACAATAGCAGACTGGACTGTAAACAGATGATCTCAAGCTAGCGTCGCTGTTTAGGTATTAAAAAGGCTGTACTCCTGGATAAACTACTGTGGTGCTGTTCCCTCGCTGAACCCCCTATCACTCCTGCCTCCTACTGCTGTTCCCTTGAAGGCCTCCACCCCCTCCTATCCCTCCTGGTGACCCCTGTGATGTCGTCCCCGTGCTGTGGCTTCCTGGCGCAGTACACCCACCATCACCTGGTTGCCTTCCTCCTCACCTTCTTTAGctaTGTCCTCCTGCACGCCTCAAGGAAGACCTTCAGTAATGTGAAAGTGAGCATCTCAGCCCAGTGGACTCCCTCTGTGCAGAATGCCAGCTCTCCTGCCTTCTCACCCGGGGAGACATGGGAAAAGAATAACCTGTTTGCAGACTCCGATGAAGCCACTCTGTTCCTGGGTGTCCTTGACACCATCTTCCTGTTTTCCTACGCCGTGGGCCTATATATGAGTGGAGTGATCGGAGACCGCATGAACCTCCGGTATGTCCTCTCCTTTGGTCTGTGTGGTTCAGCCATAGTGGAGTTTGTGTTTGGTACCCTGACTGAGTGGCTGCAGTTCTATAACATCTACCTGTACTGTGGCCTTTGGGTGCTGAACGGCCTACTGCAGTCTGCTGTCTGGCCCTGTGTGGTGGCAGTCATGGGGAACTGGTTCGGCAAGTCGGGgcgaggttttgtgtttggcctgtgGAGTGCCTGTGCCTCTGTTGGGAACATTCTGGGAGCTTTCCTGGCATCCAGTGTTCTCAAGTACGGATATGAGTATGCCTTCCTGGTCACTTCAGTGCTGCAGTTTgctggtggggtggtggtgttctTTGGTCTGCTCACCTCCCCTAAAGAAGTGGgtctgtgtttGGAGTCAGAGACAAGTCTGAGTCCAGTGGAGAGAGATGCAGACAGCCACAGGCCTCTGATGAGTGatgaagaggatgaggaagaggagggatcGGAGGAGGTGTGTGACGGAGGGTACTACACCATCCAGCAGGGGGATGAGGAGCCGCGGGAAACACCCAAAGCCATCGGATTCTGCCAGGCCTTCTGCCTGCCCGGGGTGCTGCCTTATTCCCTGGCGTACGCGTGTCTGAAGCTGGTGAACTACTCCTTCTTCTTCTGGTTGCCCTTCTACCTGAGCAGGAACTTTGGCTGGAAGGAGGCCCAGGCCGACAGGCTCTCTGTGTGGTACGACGTGGGAGGCATCATAGgtgGTACGATCCAGGGCCTGATCTCAGACTGCATGGGGAAGAGAGCTCCAGTGTTAGCCGTCAGTCTGCTGCTGGCTATGGGAGCCCTGGTGGGGTACAGTCACTCACCTCCGGACCAGGTGGTGAATGCAGCTCTCCTGGCCACCACAGGTTTCTTCATAGGAGGGCCATCCAACATGATCAGCTCAGCCATCTCTGCAGACCTGGGGCGACAGGAGGCCCTCAGGGGCAGTCAGGAGGCTCTGGCTACCGTCACCGGCATAGTGGACGGGACTGGGAGTATTGGAGCTGCAGCgggacagTACTTGGTATCGCTGATCGAGAGCAAACTGGGCTGGATGTGTGTGTTCTACTTCTTCATAGTCATGACGGGGGGCAGCATAGTCTTCATCTTGCCGCTGATCGTGACTGAGATTCGGGCCATGTGGAGGGACAGACAGGCAAGGACACAACAGCTGTGATGCCTTCCTCACGGGGGCCATGTTTGTTCCTACTCCTTCCCTATGGGGCCTACTAACTGTCAGTCAATCAGATTATGTCCACTGATCACTACTGTAGATATATGTACAACATGTCTATGAATGTGTGTGTCCAATCTATGTATATATTTGGTCTGAATCACGTTTTTTAAAGATTACTTCAGCGCCTTTTACGCGTGGGGGCAGGGCCCTCTCAATGTTTGTGGTCTAAGATAGGAAGTTCCAAGCAGCTGTCAATGATTCAAATTCCTTTACCTGTTTACTGAAGTGTATAATGATTACTTGTATAGAATGATTGGATCTGCTCATTTGCTTAGTAGAGATCAGATTTCAAAGGCAcgcaaaacacacactcactgaagtCGGCCACTCACTCTTAGAATCTCACAGTCACACATCCGCTTGGTGGATTTTCAGTCATTGCCTGTAGCACATACATGTAGTCAGTGACCACGCTTACGTGCACACAGTATTCTGGACAGTAGCTCATTCATATGGGTTAAATAGTAACTGAAATATGGCCTACAACCTCTCACATGTAGCATAATATAAAGTTAACTCGTGCAGAATTATGCTTTTTTTGCAGTAAAATTAGGCAACAAATGTTAACTTTGTCTCGGGAACAGGAGTGGATAAATATtaatgatttctttcagcatctCTTGAGAAAATGTGTGTAATGTGCAGACAGTCTTATCATAAACCTATTTAATTGTTTGCTCAGCTTTTAATTTAATTCAAACCGGTCAAACTGATGACATTTGGACATTTTGTACAGACCTATCGTTCCATTGTTTTTGGAATCTTTCCACTGTTCTCCCCGGTCGCTAAATGAAACAGACAACTTTACCGGTTTTAGCTAGATTACTACTGCGTTCATTCTATCGATGTaagacattattctggtgagcactACTTTATTTGGTCTTCTGGGACAACAagttatgacagaagagaagTTGCATGTATCTAACAATAGTTGGCAAACAAATGGCCTAATTGTCAGAAATTATAAACAGAAAGTGTCTAAATTAAGGGTGAAATTAGCCAGTAGGCCACACGGCCCAATACGGAGCATCAGTAAAACTTTTTCGGGTTATTGTAAACGGGATATGATGTTTACGTGTGTCAACTCACTTGAGTACCCCGAATAATAACGGAATATTGGTGTGCATTTAAACGTGGTCAGTGTAAAAAGTACGTTTGCCGATAAAGTTTTTAAGCAGCTTTGTAAGTCATAAAGGTCAGTAAACATTAACTGCACGCCtctgaaatattttatttatttatttaaagaacaGTAAGATTacatcaatgtaaaaaaaaatcgtCTTATCAAAATGAGGTAAAAGTATACTGATTTTATTTACTGTAGGTACATAAATTAAAACGGTACAAGTAGTTCTCCTGGTTGGACTGGGATCAGTTGCTAAATTACTGTAGTGGTTTTAACCAAGGTCACAAGTGCATTTCAGCTGGTCCAGGACCTGCTAAACTTGATGAAATGGAATGTGTATTTAATTGTAACATTATCGAATGTATGTTCTTAATCTGTGATGAATGttcgttttttttctctccatatgtGCACTTTAAATTCATATTTTAATGAGCCTATgtgatgtttgttttgttttttcaagAAAAGAAAATAGACTTTTTCTAAA
>XM_036957621.1
GTTGGTGGCGGTAGGAAATGTGAAACCACAGCagaagaaaacaaaaagaaaCCGATTGCTACACTGTACAATAGCAGACTGGACTGTAAACAGATGATCTCAAGCTAGCGTCGCTGTTTAGGTATTAAAAAGGCCTCCACCCCCTCCTATCCCTCCTGGTGACCCCTGTGATGTCGTCCCCGTGCTGTGGCTTCCTGGCGCAGTACACCCACCATCACCTGGTTGCCTTCCTCCTCACCTTCTTTAGctaTGTCCTCCTGCACGCCTCAAGGAAGACCTTCAGTAATGTGAAAGTGAGCATCTCAGCCCAGTGGACTCCCTCTGTGCAGAATGCCAGCTCTCCTGCCTTCTCACCCGGGGAGACATGGGAAAAGAATAACCTGTTTGCAGACTCCGATGAAGCCACTCTGTTCCTGGGTGTCCTTGACACCATCTTCCTGTTTTCCTACGCCGTGGGCCTATATATGAGTGGAGTGATCGGAGACCGCATGAACCTCCGGTATGTCCTCTCCTTTGGTCTGTGTGGTTCAGCCATAGTGGAGTTTGTGTTTGGTACCCTGACTGAGTGGCTGCAGTTCTATAACATCTACCTGTACTGTGGCCTTTGGGTGCTGAACGGCCTACTGCAGTCTGCTGTCTGGCCCTGTGTGGTGGCAGTCATGGGGAACTGGTTCGGCAAGTCGGGgcgaggttttgtgtttggcctgtgGAGTGCCTGTGCCTCTGTTGGGAACATTCTGGGAGCTTTCCTGGCATCCAGTGTTCTCAAGTACGGATATGAGTATGCCTTCCTGGTCACTTCAGTGCTGCAGTTTgctggtggggtggtggtgttctTTGGTCTGCTCACCTCCCCTAAAGAAGTGGgtctgtgtttGGAGTCAGAGACAAGTCTGAGTCCAGTGGAGAGAGATGCAGACAGCCACAGGCCTCTGATGAGTGatgaagaggatgaggaagaggagggatcGGAGGAGGTGTGTGACGGAGGGTACTACACCATCCAGCAGGGGGATGAGGAGCCGCGGGAAACACCCAAAGCCATCGGATTCTGCCAGGCCTTCTGCCTGCCCGGGGTGCTGCCTTATTCCCTGGCGTACGCGTGTCTGAAGCTGGTGAACTACTCCTTCTTCTTCTGGTTGCCCTTCTACCTGAGCAGGAACTTTGGCTGGAAGGAGGCCCAGGCCGACAGGCTCTCTGTGTGGTACGACGTGGGAGGCATCATAGgtgGTACGATCCAGGGCCTGATCTCAGACTGCATGGGGAAGAGAGCTCCAGTGTTAGCCGTCAGTCTGCTGCTGGCTATGGGAGCCCTGGTGGGGTACAGTCACTCACCTCCGGACCAGGTGGTGAATGCAGCTCTCCTGGCCACCACAGGTTTCTTCATAGGAGGGCCATCCAACATGATCAGCTCAGCCATCTCTGCAGACCTGGGGCGACAGGAGGCCCTCAGGGGCAGTCAGGAGGCTCTGGCTACCGTCACCGGCATAGTGGACGGGACTGGGAGTATTGGAGCTGCAGCgggacagTACTTGGTATCGCTGATCGAGAGCAAACTGGGCTGGATGTGTGTGTTCTACTTCTTCATAGTCATGACGGGGGGCAGCATAGTCTTCATCTTGCCGCTGATCGTGACTGAGATTCGGGCCATGTGGAGGGACAGACAGGCAAGGACACAACAGCTGTGATGCCTTCCTCACGGGGGCCATGTTTGTTCCTACTCCTTCCCTATGGGGCCTACTAACTGTCAGTCAATCAGATTATGTCCACTGATCACTACTGTAGATATATGTACAACATGTCTATGAATGTGTGTGTCCAATCTATGTATATATTTGGTCTGAATCACGTTTTTTAAAGATTACTTCAGCGCCTTTTACGCGTGGGGGCAGGGCCCTCTCAATGTTTGTGGTCTAAGATAGGAAGTTCCAAGCAGCTGTCAATGATTCAAATTCCTTTACCTGTTTACTGAAGTGTATAATGATTACTTGTATAGAATGATTGGATCTGCTCATTTGCTTAGTAGAGATCAGATTTCAAAGGCAcgcaaaacacacactcactgaagtCGGCCACTCACTCTTAGAATCTCACAGTCACACATCCGCTTGGTGGATTTTCAGTCATTGCCTGTAGCACATACATGTAGTCAGTGACCACGCTTACGTGCACACAGTATTCTGGACAGTAGCTCATTCATATGGGTTAAATAGTAACTGAAATATGGCCTACAACCTCTCACATGTAGCATAATATAAAGTTAACTCGTGCAGAATTATGCTTTTTTTGCAGTAAAATTAGGCAACAAATGTTAACTTTGTCTCGGGAACAGGAGTGGATAAATATtaatgatttctttcagcatctCTTGAGAAAATGTGTGTAATGTGCAGACAGTCTTATCATAAACCTATTTAATTGTTTGCTCAGCTTTTAATTTAATTCAAACCGGTCAAACTGATGACATTTGGACATTTTGTACAGACCTATCGTTCCATTGTTTTTGGAATCTTTCCACTGTTCTCCCCGGTCGCTAAATGAAACAGACAACTTTACCGGTTTTAGCTAGATTACTACTGCGTTCATTCTATCGATGTaagacattattctggtgagcactACTTTATTTGGTCTTCTGGGACAACAagttatgacagaagagaagTTGCATGTATCTAACAATAGTTGGCAAACAAATGGCCTAATTGTCAGAAATTATAAACAGAAAGTGTCTAAATTAAGGGTGAAATTAGCCAGTAGGCCACACGGCCCAATACGGAGCATCAGTAAAACTTTTTCGGGTTATTGTAAACGGGATATGATGTTTACGTGTGTCAACTCACTTGAGTACCCCGAATAATAACGGAATATTGGTGTGCATTTAAACGTGGTCAGTGTAAAAAGTACGTTTGCCGATAAAGTTTTTAAGCAGCTTTGTAAGTCATAAAGGTCAGTAAACATTAACTGCACGCCtctgaaatattttatttatttatttaaagaacaGTAAGATTacatcaatgtaaaaaaaaatcgtCTTATCAAAATGAGGTAAAAGTATACTGATTTTATTTACTGTAGGTACATAAATTAAAACGGTACAAGTAGTTCTCCTGGTTGGACTGGGATCAGTTGCTAAATTACTGTAGTGGTTTTAACCAAGGTCACAAGTGCATTTCAGCTGGTCCAGGACCTGCTAAACTTGATGAAATGGAATGTGTATTTAATTGTAACATTATCGAATGTATGTTCTTAATCTGTGATGAATGttcgttttttttctctccatatgtGCACTTTAAATTCATATTTTAATGAGCCTATgtgatgtttgttttgttttttcaagAAAAGAAAATAGACTTTTTCTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K03447 SLC37A3; MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957620.1 False 3475 mRNA 0.46 14 30841525 30851119
XM_036957621.1 True 3373 mRNA 0.46 14 30841542 30851119

Neighbor

gene id symbol gene type direction distance location
LOC110500220 tnnt2 coding upstream 20230 30808161 ~ 30821295 (+)
LOC110500219 LOC105029072 coding upstream 33543 30750010 ~ 30807982 (+)
LOC110500218 tnni1 coding upstream 116251 30718580 ~ 30725274 (+)
LOC110500929 rs3a coding upstream 296359 30544390 ~ 30545166 (+)
LOC110500216 LOC106609220 coding upstream 431244 30264099 ~ 30410281 (+)
LOC110500930 LOC106609235 coding downstream 20154 30871273 ~ 30877399 (+)
LOC110500226 LOC106576059 coding downstream 30657 30881776 ~ 30889293 (+)
LOC110500227 tmem209 coding downstream 38253 30889372 ~ 30895129 (+)
LOC110500231 ahcyl2 coding downstream 44885 30896004 ~ 30940496 (+)
LOC110500229 LOC106609237 coding downstream 91490 30942609 ~ 30982749 (+)
G1726353 NA non-coding upstream 169980 30671323 ~ 30671545 (+)
G1726343 NA non-coding upstream 175423 30665650 ~ 30666102 (+)
G1726330 NA non-coding upstream 188714 30652450 ~ 30652811 (+)
G1726311 NA non-coding upstream 204946 30636366 ~ 30636579 (+)
G1726310 NA non-coding upstream 206105 30635214 ~ 30635420 (+)
G1726524 NA non-coding downstream 11469 30862588 ~ 30862794 (+)
G1726553 NA non-coding downstream 92747 30943866 ~ 30944191 (+)
G1726569 NA non-coding downstream 150101 31001220 ~ 31001757 (+)
G1726578 NA non-coding downstream 158461 31009580 ~ 31009866 (+)
G1726587 NA non-coding downstream 169851 31020970 ~ 31021218 (+)
G1726222 NA other upstream 230164 30605300 ~ 30611361 (+)
G1726209 LOC106609221 other upstream 250889 30582002 ~ 30590636 (+)
G1725312 LOC106576088 other upstream 949568 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 1581596 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 1627242 29209169 ~ 29214283 (+)
G1726863 NA other downstream 289478 31140597 ~ 31141090 (+)
G1727146 NA other downstream 598277 31449396 ~ 31450117 (+)
G1727181 NA other downstream 656937 31508056 ~ 31508372 (+)
G1727220 NA other downstream 713016 31564135 ~ 31564594 (+)

Expression


Co-expression Network