LOC110500930 (LOC106609235)


Basic Information

Item Value
gene id LOC110500930
gene name LOC106609235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30871273 ~ 30877399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578436.2
CTACCCATGCCTCTTTTCCACTCttgttcacaccctctctctctctctctctctctctctcggattcTCTCTATTTGTTCCTGTCCTGTTCAGACGAAGCCTGCTGTGTTCCCTAGCTGTCTGTACTGCTGTTTAGCGAGAAGTAGAGCTGTGTAGGATTGAGCAGGACAACGTGTGACCACGTCTAGGGCTGTGTGTAGGGCTGTATCAGCAGGGCACAAGGGCTGTGTTGGGCTGGCAGAGGTAGGGCTCTCCCATGGCCTACCCTCAGTGCCCAGCCCCTGGGTCCTACACCATGGTCATCATCCCTCTCCGGAGCAGCCTCTACAGTCTTGACGCCCTACGCTTCTACCTATGGATTAAGAGGCTAAAGAGCTTGGAGAGGGAGCAGGACTCTCTGTGGACCGGGCTGCAGGTTCTGGAGCGAGCCCGACTATGGTACCGTCATAGACTGGAGAACAACAGATCCAGGCAGGCTAACGTGGGCACCGGGGCTGGAGCTAGGGCAGAGGTGTGGGGAGGAGAGGGGGTGTCTTCATGCCTCCTGCGGTCTCAGATCCAGAGGGTGAATGGATCTTTGGGTAGTCTGATGATTGAGCCCAACGTAACCAGCTGTCCCTCCTCTCCGAAGAGGGACGGGGTCGAGGTATCAGACAATGAGCTACGGTGGCAGAACACGGTACTGGTACAGGAGGTGAGCGAGAAGAATTTTCAAATCTCCCTgttggagctggagagagaccgCCTTTTGCAAGAGCTGAGTGTGCATCTAGGTGTGGAAGTGTAGTGGGCATAACTGAGTTATTTGAGTTTGTACATTGCTATTAAGCCCATTTCACTTTTATCCCACATGAGCGCACACACGTGACTGAACACCACTTCATAACTCTTCAACTAAAGTTATTCCAATCTATGTACGGATCTCATCACTGTAAATATGCttgtaaaataataattcaaTATACTGAATGTACAAAGACTGAGTGTGTTATTGTC

Function

NR:

description
suppressor APC domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578436.2 True 996 mRNA 0.51 4 30871273 30877399

Neighbor

gene id symbol gene type direction distance location
LOC110500223 LOC106609230 coding upstream 20154 30841525 ~ 30851119 (+)
LOC110500220 tnnt2 coding upstream 49978 30808161 ~ 30821295 (+)
LOC110500219 LOC105029072 coding upstream 63291 30750010 ~ 30807982 (+)
LOC110500218 tnni1 coding upstream 145999 30718580 ~ 30725274 (+)
LOC110500929 rs3a coding upstream 326107 30544390 ~ 30545166 (+)
LOC110500226 LOC106576059 coding downstream 4377 30881776 ~ 30889293 (+)
LOC110500227 tmem209 coding downstream 11973 30889372 ~ 30895129 (+)
LOC110500231 ahcyl2 coding downstream 18605 30896004 ~ 30940496 (+)
LOC110500229 LOC106609237 coding downstream 65210 30942609 ~ 30982749 (+)
LOC110500233 LOC106609239 coding downstream 112806 30990205 ~ 30997950 (+)
G1726524 NA non-coding upstream 8479 30862588 ~ 30862794 (+)
G1726353 NA non-coding upstream 199728 30671323 ~ 30671545 (+)
G1726343 NA non-coding upstream 205171 30665650 ~ 30666102 (+)
G1726330 NA non-coding upstream 218462 30652450 ~ 30652811 (+)
G1726311 NA non-coding upstream 234694 30636366 ~ 30636579 (+)
G1726553 NA non-coding downstream 66467 30943866 ~ 30944191 (+)
G1726569 NA non-coding downstream 123821 31001220 ~ 31001757 (+)
G1726578 NA non-coding downstream 132181 31009580 ~ 31009866 (+)
G1726587 NA non-coding downstream 143571 31020970 ~ 31021218 (+)
G1726589 NA non-coding downstream 147802 31025201 ~ 31025513 (+)
G1726222 NA other upstream 259912 30605300 ~ 30611361 (+)
G1726209 LOC106609221 other upstream 280637 30582002 ~ 30590636 (+)
G1725312 LOC106576088 other upstream 979316 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 1611344 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 1656990 29209169 ~ 29214283 (+)
G1726863 NA other downstream 263198 31140597 ~ 31141090 (+)
G1727146 NA other downstream 571997 31449396 ~ 31450117 (+)
G1727181 NA other downstream 630657 31508056 ~ 31508372 (+)
G1727220 NA other downstream 686736 31564135 ~ 31564594 (+)

Expression


Co-expression Network