LOC110500226 (LOC106576059)


Basic Information

Item Value
gene id LOC110500226
gene name LOC106576059
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30881776 ~ 30889293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577467.2
GGCAAATGACCTCAGATCAGATGTTTGTCCTGCAGCGCTGCATCTTGCTTGCGCATGCTCAGTGTGTCACGCTGTCATGGACCCGGAGAGGAAGCCTTTTGCTCGGCAGAATGCACACATTTCACACTATCTTGGATGAGCACACACTACCGAAGTCAGAATGAATGACATGAACCTCAGCCCTGTTGGGATGGACCAGTTAAGTGTGCCCTCTGTGAGTGCCAGTCATCTGTGTCTACCCACCTCCCCAACACACAACCCCATCACTACAACAGGCATGTCTGTGGCTATACCCAGCCTGGGGCCCTCTCTTGGGTCTCTGCCTTCTGCTCtgtcactcatgctgccaatgGGTCCTCTTGGTGACAGAGGGGTCATGTGTGGCCTTCCAGAGAGGAACTACTCATTACCTCCTCCCCCCTACCCACACTTGGAGAGTAGCTACTTCAGACACATACTGCCAGGTATCCTGTCTTACCTGGCAGACCGGCCTCCCCCTCAGTACATTCAGCCCAGCAGTCTAAACATGGATGGGACTCTCTCTGTGTCCAGCCAGAACCCCTCAGGGCTGGACCCTTACAATGGCCCTGGAGGGCCTCTGGAACAAGGCCTGGTGTCCCTGGACTCCCGTCAGGTTGGTGGCCAAGGAGACCTCCACCAGGGTGGGGGCCACGAGGTGCAGCTGGACTCCACAGGGCTGAACATGGAGTCCCGGGTCAGCAGCCCCATGTCCCCAGACAGGATGGGAGAGGACCTGGCCAACATGGAGGGGGTGGTGGGGGCTGAGAACCAGCAGCAGCTGGGAGGGAGAGGCCAGAACCATGAGGGCCTGGGAAGAGTTGAGTCCTCTGGGGGCGTGATGCCCATGCACGGGCCTGGCCTGGAGCTTCCTGTGGGGATGGAGCCAGAGCACCTAGGGGGCCGGGTGGGGAACTCAGGGGGAGGCGGTCTGGGGGAGTCTTTACACAGCTCAGGGGAGCTGAACTCTGGGGTGGTGAGTGTGGTTCTCAACCAGTCCCAGCTGGAGCCTGTGTCACTCCATGGTCATTCGGGCATGGGCCTAGAGTCGGTGAACGTGTCCCCCATCACGGCAGAGGTGTCCCTGGGGCCAGAGAACAGCCTGTTGCTGGTCAACTCCACCCTGCAGCTGGAGGACTCCACCTCCAACAAGGAGAACATGGTCACTGCCTTCACCATCTGGTGTACGCTGTGTGAGCGGTCGTATCCCTCCGACTGCCCAGAGCACGGCCCAGTCACCTTTATCCCAGACACGCCCATCCAGAGCAGAGCCCGTCTGTCTCTGCCTCGCCCGCTCTGCCTCCGCATCTCTGTAGCTGATCAGCCTTTAGGAGTGTTTGCCCGGGACATCATACCTCCTAGGACCTGCTTTGGGCCCATGGTGGGTCAGCACTGTAGCAACGTAGACCTGCAAGACTGGCCAGACAAGGACACCCCTCAGATATGGAAGATGTTCCACAACAACGTGCTTGAGTTCTGTATTGTGACCACAGATGAGAATGAATGCAACTGGATGATGTTTGTCCGCAAGGCACGGACCAGAGAGGAGCAGAACCTGGTGGCCTACCCTGACAACGGGAAGCTGTTCTTCTGCACGCCCGCTGAGATCCTCCCAGACCAGGAGCTGCTCTTCTACTACACCAGGGACTACTGCAGGCAGATGGGGGTCCCTCAGGTCCCAGAGGGCCAGATGTGCCAGTGCGGCAAAGAATGCCAGTCCTTCGCGGAGCTCAAGTCCCACTTGAGCAGCCACAACAACCAGGACCACCCCCATTCCCACAGCCCCAGCCAGGACCACCACCAGGAACACCACCAGGAGGGCAAGCTGCCCAGTGGTACATCCagctcctcctcatccccctggGCCTGCCACTCCCACTCTAATAACACAAATAACTCTGGCTCCAacccacactcacacagacactcgCTTGAGAGGAAGTACAAGTGCAGTATGTGCTCGCGGGCGTTCACCACGTCCACTAAGCTCAACGTGCACTTCATGGGACACGTGGGGATGAAGCCGCACAAGTGTGAATACTGCAGCAAGGCCTTCAGTGATCCGAGCAACCTAAGGATGCACCTCAAGATACACACAGGTCAGAAGAACTACAGGTGTAATGTGTGTGAGAAGTCGTTCACTCAGAAGGCCCACATGGCGTCTCATATGGTGATTCACACGGGGGCCAAGAACTTCAAGTGTGACCTGTGTGACAGGATGTTCATCAGGAAGCAGGACCTCAAGCAGCACATGTTCACACATACACAAGAGCGACAGATCCACTGCCCCAAGTGTGACAAACATTTCTTGAGGACCAACCACTTGAAGAAGCACATGAACTCCCATGAGGGTCGCCGGGACTACATCTGTGAGAAGTGTGAGAAGGGCTTCCTCACCAAATACCACCTCACCAGACACCTCAAGATCTGCAAAGGCCCCAAGACTGACCGAGGGgcccaggaggaggaggaggaggatgaggaggaggatgaagatgatgatgatgatgatgaagaggaagtAGAGAGACTGATAGATCCAGATAGCAGAGAGGACTGTGGGTTAGAGGGATACGATTCTGAGAAAGCGTTGTCGCCACACAATTGACTGTGACTTCATTGTGCCAATACTAGATAtgtttatttatatttacttcgttTGAACTGTTAGTTTGTTTTGCCAATATCTCATTTGTTGTCAAGTTAAGGTTTCTTTTATTTTCAAATATCAGTTTAACATTGGGAACAATCAAACAAGGATAACCCAGATTGTGATTTAGAGGTACTGTAAATGCATAGACTTCATGTTTTATTTCTTACATTTTCCTTGCCAGACAATGATGATGATATGCTGCTCTATCATCGCTCCATACATTAGTCTGAACTGCCATCCTATAAGTCGTTTGTGCCGATGTCGAAATGATGTGATTCACGTAGGCCGGCTttggcccaacccatcggtttctgggaccaatcagaatgtGTTTGGGTTCTCAAAGAGTCGGGGAGGAAAGCAAATCCAGACTCATCATGGAGAAGTAATGTTAGTGGGCTTGCTGTTTGGCCGGAGCGATGTGGCTGAGTAGCCAGGCAATAATTTTCCTAGAAAAAGTTATAATTATGTTTTAACTCAAAAGACATGGCCTTTTAAcacacaataatatatatatatttttaacagtGGTCATCTCTTTATGGAATAGATGCTGAGTTTGAGTCTGTCTCTGGATGCTGGTTCTGCTGCTGGTTGAATGTTGAAGAAGTATACCATGTGATGTGTCTGCCACAATTTatttttgtatgtatgtatgcaaaTATATGAATAATGTAAAACGTC
>TU1977723
CACGCTGTCATGGACCCGGAGAGGAAGCCTTTTGCTCGGCAGAATGCACACATTTCACACTATCTTGGATGAGCACACACTACCGAAGTCAGAATGAATGACATGAACCTCAGCCCTGTTGGGATGGACCAGTTAAGTGTGCCCTCTGTGAGTGCCAGTCATCTGTGTCTACCCACCTCCCCAACACACAACCCCATCACTACAACAGGCATGTCTGTGGCTATACCCAGCCTGGGGCCCTCTCTTGGGTCTCTGCCTTCTGCTCtgtcactcatgctgccaatgGGTCCTCTTGGTGACAGAGGGGTCATGTGTGGCCTTCCAGAGAGGAACTACTCATTACCTCCTCCCCCCTACCCACACTTGGAGAGTAGCTACTTCAGACACATACTGCCAGGTATCCTGTCTTACCTGGCAGACCGGCCTCCCCCTCAGTACATTCAGCCCAGCAGTCTAAACATGGATGGGACTCTCTCTGTGTCCAGCCAGAACCCCTCAGGGCTGGACCCTTACAATGGCCCTGGAGGGCCTCTGGAACAAGGCCTGGTGTCCCTGGACTCCCGTCAGGTTGGTGGCCAAGGAGACCTCCACCAGGGTGGGGGCCACGAGGTGCAGCTGGACTCCACAGGGCTGAACATGGAGTCCCGGGTCAGCAGCCCCATGTCCCCAGACAGGATGGGAGAGGACCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577467.2 False 3355 mRNA 0.53 11 30881776 30889293
TU1977723 True 690 TUCP 0.58 5 30881843 30883613

Neighbor

gene id symbol gene type direction distance location
LOC110500930 LOC106609235 coding upstream 4377 30871273 ~ 30877399 (+)
LOC110500223 LOC106609230 coding upstream 30657 30841525 ~ 30851119 (+)
LOC110500220 tnnt2 coding upstream 60481 30808161 ~ 30821295 (+)
LOC110500219 LOC105029072 coding upstream 73794 30750010 ~ 30807982 (+)
LOC110500218 tnni1 coding upstream 156502 30718580 ~ 30725274 (+)
LOC110500227 tmem209 coding downstream 79 30889372 ~ 30895129 (+)
LOC110500231 ahcyl2 coding downstream 6711 30896004 ~ 30940496 (+)
LOC110500229 LOC106609237 coding downstream 53316 30942609 ~ 30982749 (+)
LOC110500233 LOC106609239 coding downstream 100912 30990205 ~ 30997950 (+)
LOC110500235 LOC106609242 coding downstream 156737 31046030 ~ 31065651 (+)
G1726524 NA non-coding upstream 18982 30862588 ~ 30862794 (+)
G1726353 NA non-coding upstream 210231 30671323 ~ 30671545 (+)
G1726343 NA non-coding upstream 215674 30665650 ~ 30666102 (+)
G1726330 NA non-coding upstream 228965 30652450 ~ 30652811 (+)
G1726311 NA non-coding upstream 245197 30636366 ~ 30636579 (+)
G1726553 NA non-coding downstream 54573 30943866 ~ 30944191 (+)
G1726569 NA non-coding downstream 111927 31001220 ~ 31001757 (+)
G1726578 NA non-coding downstream 120287 31009580 ~ 31009866 (+)
G1726587 NA non-coding downstream 131677 31020970 ~ 31021218 (+)
G1726589 NA non-coding downstream 135908 31025201 ~ 31025513 (+)
G1726222 NA other upstream 270415 30605300 ~ 30611361 (+)
G1726209 LOC106609221 other upstream 291140 30582002 ~ 30590636 (+)
G1725312 LOC106576088 other upstream 989819 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 1621847 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 1667493 29209169 ~ 29214283 (+)
G1726863 NA other downstream 251304 31140597 ~ 31141090 (+)
G1727146 NA other downstream 560103 31449396 ~ 31450117 (+)
G1727181 NA other downstream 618763 31508056 ~ 31508372 (+)
G1727220 NA other downstream 674842 31564135 ~ 31564594 (+)
LOC110501063 LOC106609150 other downstream 1225443 32114413 ~ 32144886 (+)

Expression


Co-expression Network