LOC110500233 (LOC106609239)


Basic Information

Item Value
gene id LOC110500233
gene name LOC106609239
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30990205 ~ 30997950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110500233
CATTCACATCTGTGTTTCAGCTGTTCTTGTGCTGCACTGAGAATACTGATTCCTTCCACGCTGAATACAGGAATCCTCTCCTCTCACAACAGAGAATCCTAGGATTGATACTACAGCAGCTCTTTAAAGATGACACCCACTGTGACTCTCAACACCGGGGCCAGCATGCCTATCTTGGGCTTGGGGACATGGGGGGCAGAAGCAGGCAAGGTAACGGAGGCAGTGAAAGCAGCAATCTCTGCAGGCTACAGACACATAGACGGAGCCTACTGTTACCAGAATGAGGACATGGTGGGGGTTGGCATTCACACCATGATTGGCCAGggggtggtgaagagagagagaggagctttTCATCGTCAGTAAGCTGTGGTGTACGCTCCATCAGAAGTCTATGGTGAAGGGAGCCTGTCAGAAGACTCTGAGTGACCTCAAGCTAGACTACCTGGACCTCTACCTAATACACTTCCCTATGTGCTTTcagCCTGGAGAGAATCTATTTCCTTTTGGTGAAGACGGACAGGTAGCCGCAGGTGAAAGCAACTTCCTGGACACTTGGGAGGCTATGGAGGAGCTGGTGGATGCTGGTCTGGTCAAGGCTATCGGTGTCTCCAACTTTAACAAAGACCAGATTGAATCCATCCTAAACAAGCCAGGCCTCAAGTATAAACCTGCCAACAACCAGATTGAATGCCACCCCTATCTGACCCAGGAGAAGCTGATCAACTACTGTCACTCTAAAGGCATCTCAGTGACAGCCTACAGCCCTCTGGGCTCCCCAGACAGACCAAGGGCGAAACCTGGTGAGCCGTCTCTGCTTGAGGACCCAAATTTAAAGACCATCGCTGATAAGCACAATAAGACTACAGCACAGATCCTTATCCGCTTTCAAATCCAGAGGAATGTGATCGTCATTCCAAAGTCGGCTACGCCCTCCCGGATCAAGGAAAATTTTCAGGTGTTTGACTTCGAGCTGAATGACGAAGACATGAAAGACATCTTGAGTTTCAACAGGAACATGAGAGGATTTGCTATGAAATGGGGCAACAAGCACAAAGACTTCCCTCTGCATGCAGAATACTGAAACCTCCGTGTGGACACCCACATTCCTACACTGGGGACATACAGCGAGAAGTCCAGTAGTTGTACAGATTCAACCACTACTGTGACCTTGTTCATGAGGCAAACAGAATGTCAATGTGTAATGTAATAACTGCCAGATATTGTTGCCTTTACTTGTTCAGAGTTTAAACATGTACGTTTACCTACATGTTGGGAAGTGCCTTTGAAAGCATGGTGTCCTTGTGCTCCTTGTTGTTATATAAAATTATATTAATAATTCCTTAGACATTGATCTTTAGAGATATCTCAACCAATATGTTAACATTGACAACTTACACAGTAAAATTTGACTCATTCCAGAATTTCTTTATGTATTGCGACATGTTTAGATTCTAATCCTGAAATAAACTGCTACCTGACTAACTTGATATATTCATATGTATAATATAGAACACAATATTGAAGCAAAGAAAGCtatcataaaaaaataaaactgttcAAGGGAACTGGGAATTTCACAACAGTATCACACAAGTCAAAGTCTGTGACTAGGGGTTTTATCATCCTGTAAGGCAGGAGTGTGGATGATTCATTCTAGGTCAAAAGGCACCTATG

Function

NR:

description
aldose reductase-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110500233 True 1677 mRNA 0.45 10 30990205 30997950

Neighbor

gene id symbol gene type direction distance location
LOC110500229 LOC106609237 coding upstream 7456 30942609 ~ 30982749 (+)
LOC110500231 ahcyl2 coding upstream 49709 30896004 ~ 30940496 (+)
LOC110500227 tmem209 coding upstream 95076 30889372 ~ 30895129 (+)
LOC110500226 LOC106576059 coding upstream 100912 30881776 ~ 30889293 (+)
LOC110500930 LOC106609235 coding upstream 112806 30871273 ~ 30877399 (+)
LOC110500235 LOC106609242 coding downstream 48080 31046030 ~ 31065651 (+)
trnaa-ugc-149 NA coding downstream 106192 31104142 ~ 31104212 (+)
LOC110500239 LOC106609244 coding downstream 429877 31427827 ~ 31436839 (+)
LOC118942919 NA coding downstream 466302 31464252 ~ 31465847 (+)
LOC110500240 LOC106609248 coding downstream 495512 31493462 ~ 31497830 (+)
G1726553 NA non-coding upstream 46014 30943866 ~ 30944191 (+)
G1726524 NA non-coding upstream 127411 30862588 ~ 30862794 (+)
G1726353 NA non-coding upstream 318660 30671323 ~ 30671545 (+)
G1726343 NA non-coding upstream 324103 30665650 ~ 30666102 (+)
G1726330 NA non-coding upstream 337394 30652450 ~ 30652811 (+)
G1726569 NA non-coding downstream 3270 31001220 ~ 31001757 (+)
G1726578 NA non-coding downstream 11630 31009580 ~ 31009866 (+)
G1726587 NA non-coding downstream 23020 31020970 ~ 31021218 (+)
G1726589 NA non-coding downstream 27251 31025201 ~ 31025513 (+)
G1726597 NA non-coding downstream 37860 31035810 ~ 31036235 (+)
G1726222 NA other upstream 378844 30605300 ~ 30611361 (+)
G1726209 LOC106609221 other upstream 399569 30582002 ~ 30590636 (+)
G1725312 LOC106576088 other upstream 1098248 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 1730276 29256778 ~ 29259929 (+)
G1726863 NA other downstream 142647 31140597 ~ 31141090 (+)
G1727146 NA other downstream 451446 31449396 ~ 31450117 (+)
G1727181 NA other downstream 510106 31508056 ~ 31508372 (+)
G1727220 NA other downstream 566185 31564135 ~ 31564594 (+)
LOC110501063 LOC106609150 other downstream 1116786 32114413 ~ 32144886 (+)

Expression


Co-expression Network