XLOC_003625 (zgc:112265)


Basic Information

Item Value
gene id XLOC_003625
gene name zgc:112265
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37201483 ~ 37229533 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007058
TTTTCTGTCATGGTCATGATGGATCGAGTTGCTTTCAGACTGATTCTCTTTGGTGCTTTTCTCATCTCAGCCACTTCAGCTCCTGTTGAGAAGAAACAAAATGTGGATATATACAGTTTCTATATTAACTCCACGGTGTCCAGTCGCTACGCCGCTTTGTTTTGACGTTCCTGTTCCAAACAAACTCAAACTCTTAGAAGATTCAGCTTCAGAGTTCTCTATGAATGGAGAGTCCACACATAGGCACAATGGATTCCGAAGGATTGCTTTACATTACAAATCAAACCATGACCTGGTAATAGACAAAAGGTCTATTAAATATAACGACGGCCAGAATAATGTCGAGTTCTTATGGGACCAGGAACTGACCCAACACAACGCAGAGGGTGTGTCTCTGATTCTGCAAAGCAATGAACTGGACATTACCATGGGAAATATCCGCATTGTGGTTCTTCTTCACAAGATAAATGGTCAGGTGTTTCTGTGGCCTGCTGTTCGACAACAACCAAAAGATGTCGTTTTGGCAGGGATTTTAGGGAAATCTGATGCTTCATATGATGAGATTCAAGGATCACAACCGCCGAGTTTGAAGATAAATAACCAGGAAGTGAAGGCAGACTTGGAGGATGTCAAAGACTACAGGCTTCTTTCAGCTCCGGTTATCAGATGTTGGCTGGTCTCGTTCCAGGCTGTGATGAAGGGAGATGTTTCTGATTTCACTGTCACTAAGATGTAGAGTTCAAAAAGAAAGACTCGGACAGTGCAGAAAGACAATGTGTTAGAACGAGAGCTTTCTACACTTTGTTTGATGTGCGCTTTGGGATTgcaatttgatcaaataaatatttctttccatt
>TCONS_00007059
GTCATGGTCATGATGGATCGAGTTGCTTTCAGACTGATTCTCTTTGGTGCTTTTCTCATCTCAGCCACTTCAGCTCCTGTTGAGAAGAAACAAAATGTGGATATATACAGTTTCTATATTAACTCCACGGTGTCCAGTCGCTACGCCACAACAATCATCACAAGCCGTGTGGCAAATAAACTGAGTGAGCCTCAAGAGATCCAGTTTGAGGTCAAGATTCCCAAGAATGCCTTCATCAGCAAGTTCAGAATGATCATTGAGGGGAAGACATATGATGGAGTTGTGAAGAAAAAAGAGGAAGCTCAGCAGCAATACAATAAAGCAGTGTCTCGAGGAGAAAGCGCTGGACTGATCAAATCTGTTGGACGGACTTTGGAGGACTTTAAAACATCAGTGACAGTGGCTGCAAACAGTAAAGTAACCTTTGAGTTGACCTACGAGGAACTTTTAAAGCGCCGTCTTGGCAAATATGAGCTGCTCATCAACGCCCAACCAATGCAGCCGGTGGCGGACTTCAAaATAGATGTGCACATTCAAGAGAGTCCAGGAATTTCCTTCTTGGAGGTGAAAGGAGATTTGAACACCGGTGATCTGGCCAGCGCTGTCAAAACTAAAAGAGCAGATAAAGATgCGTGGGTGACCTTCTATCCCACTCGAGACCAACAGACCAAGTGTACAAACTGTGCAGAAAATGGGCTGAACGGAGATTTGATAATAACATATGATGTCAACAGAGGAAATCCTAAAGGAGAAGTACAGATATCGAATGGCTACTTCGTCCACTACTTTGCACCTTCTGATGTTCCACGTATTCCCAAAAATGTGGTGTTTATCATTGACCGGAGTGGCTCAATGCACGGCAGAAAAATACGTCAGACTCGTTCGGCACTGTTGACGATTTTGAATGATCTAGATGAGGATGACCACTTTGGATTGATCACCTTTGACGCTGAAATTGACTTTTGGAAACGGGAACTCCTTCAAGCTACCAAGGCAAACCGGGAGAACGCAGAATCTTTTGTGAAACGGATCCAAGATAGAGGAGCCACAAACATAAATGATGCCGTTCTAGCAGGAGTGGACATGATCAATCGAAATCCACGAAAAGGAACAGCCTCCATCCTGATCCTGTTGACTGATGGAGATCCCACTGCAGGTGAAACCAACATAGAGAAGATAATGGCCAATGTGAAAGAGGCAATTGGGTCAAAGTTTCCCCTCTATTGTCTTGGTTTTGGATACGATGTTAACTTTGACTTCCTGACAAAGATGTCACTTGAAAATAATGCAGTTGCTCGCAGGATTTACGAGGATTCAGACGCTGATATACAGCTTCAGggctTCTATGATGAAGTTGCCGTCCCTCTCCTCACTGATATTCAGCTTAGCTACGCAGGAGGGAAACACCTTACCAAGTCCAGCTTTGGCCTGTACTTCAATGGCTCTGAGATTGTGGTGTCAGGACAAATTACAGACAACAGTGTGGAGACTTTCACAACTGAAGTCATCGCAGTTTCAAAAGGCAATAATGTGATGTATCAAGACACTGTAATGATGAAAGACGCCAGTGACGTCAAACCCGAGAATGAAGATTTCATGCAGCGACTTTGGGCCTACCTTACAGTGAAGCAGCTCCTGGAAAGACAGGTGCTTCTCAAAGGAAAAGAGCAAGAGGATGAAAAGGAACAAGCTCTTCAACTCTCCCTGAAATACCAGTTTGTCACTCCTCTTACCTCTATGGTTGTTACTAAGCCACAGGAAGGTGAAGTGGATGTTGCAGACAAACCCAAAGAGGGTGGAGAATCACCCAGATATCCAGCAAGTCAACCCCGTCTGGTACCTTATGGTCGAAGTGGAACACCAGGATTTAGTCACCACCACTATACCACTAACTCGGGTCAACCTGGTTTGCATGCTCTACCTGGACTGCCTGGTCCACCTGGTCCACCCGATGCAAGTATCAGTTATGGAAGATTTTCTGGTGGATCACATCGCGCGTTTCTTCAGGAAGACACTTTTTCTTTTCTAGGTTTTTTCGACCAACATGATCTTTTATTGAGTTCTGCTGTGATATTGCCCACACATATGCCAAGGAGAACTTTGCCAAAGGCTACAAGTGTTGCTGGTCTTGTGCCAGTTAGTCGGTTCCTACTTCCTGCTGTTGGTCAGTCTAAGCCGCTTTGTTTTGACGTTCCTGTTCCAAACAAACTCAAACTCTTAGAAGATTCAGCTTCAGAGTTCTCTATGAATGGAGAGTCCACACATAGGCACAATGGATTCCGAAGGATTGCTTTACATTACAAATCAAACCATGACCTGGTAATAGACAAAAGGTCTATTAAATATAACGACGGCCAGAATAATGTCGAGTTCTTATGGGACCAGGAACTGACCCAACACAACGCAGAGGGTGTGTCTCTGATTCTGCAAAGCAATGAACTGGACATTACCATGGGAAATATCCGCATTGTGGTTCTTCTTCACAAGATAAATGGTCAGGTGTTTCTGTGGCCTGCTGTTCGACAACAACCAAAAGATGTCGTTTTGGCAGGGATTTTAGGGAAATCTGATGCTTCATATGATGAGATTCAAGGATCACAACCGCCGAGTTTGAAGATAAATAACCAGGAAGTGAAGGCAGACTTGGAGGATGTCAAAGACTACAGGCTTCTTTCAGCTCCGGTTATCAGATGTTGGCTGGTCTCGTTCCAGGCTGTGATGAAGGGAGATGTTTCTGATTTCACTGTCACTAAGATGTAGAGTTCAAAAAGAAAGACTCGGACAGTGCAGAAAGACAATGTGTTAGAACGAGAGCTTTCTACACTTTGTTTGATGTGCGCTTTGGGATTgcaatttgatcaaataaatatttctttccattaaactCTGATGTCATACtatgatataaaatatgtatactACAGACCTATCTGCAATTCAATTGAACACAATCAAAGTCTGAATTAACATAATACAATTctgaataaaactgaaaaaaatttacataatacaattctaaataattctgaaaaaaaatttaaaagccaTAAAAAGCCATACTTTCAAGGCTTATATAATAgtaatcaaataatttaaatacagtatatttggAAATTAGGAATATAAAGCAGTAAATGTCTATAAGGATTTTTTTGCAATctgtaaactatttaaaataaattaatattgacGTTT
>TCONS_00007060
ATGGATCGAGTTGCTTTCAGACTGATTCTCTTTGGTGCTTTTCTCATCTCAGCCACTTCAGCTCCTGTTGAGAAGAAACAAAATGTGGATATATACAGTTTCTATATTAACTCCACGGTGTCCAGTCGCTACGCCACAACAATCATCACAAGCCGTGTGGCAAATAAACTGAGTGAGCCTCAAGAGATCCAGTTTGAGGTCAAGATTCCCAAGAATGCCTTCATCAGCAAGTTCAGAATGATCATTGAGGGGAAGACATATGATGGAGTTGTGAAGAAAAAAGAGGAAGCTCAGCAGCAATACAATAAAGCAGTGTCTCGAGGAGAAAGCGCTGGACTGATCAAATCTGTTGGACGGACTTTGGAGGACTTTAAAACATCAGTGACAGTGGCTGCAAACAGTAAAGTAACCTTTGAGTTGACCTACGAGGAACTTTTAAAGCGCCGTCTTGGCAAATATGAGCTGCTCATCAACGCCCAACCAATGCAGCCGGTGGCGGACTTCAAaATAGATGTGCACATTCAAGAGAGTCCAGGAATTTCCTTCTTGGAGGTGAAAGGAGATTTGAACACCGGTGATCTGGCCAGCGCTGTCAAAACTAAAAGAGCAGATAAAGATgCGTGGGTGACCTTCTATCCCACTCGAGACCAACAGACCAAGTGTACAAACTGTGCAGAAAATGGGCTGAACGGAGATTTGATAATAACATATGATGTCAACAGAGGAAATCCTAAAGGAGAAGTACAGATATCGAATGGCTACTTCGTCCACTACTTTGCACCTTCTGATGTTCCACGTATTCCCAAAAATGTGGTGTTTATCATTGACCGGAGTGGCTCAATGCACGGCAGAAAAATACGTCAGACTCGTTCGGCACTGTTGACGATTTTGAATGATCTAGATGAGGATGACCACTTTGGATTGATCACCTTTGACGCTGAAATTGACTTTTGGAAACGGGAACTCCTTCAAGCTACCAAGGCAAACCGGGAGAACGCAGAATCTTTTGTGAAACGGATCCAAGATAGAGGAGCCACAAACATAAATGATGCCGTTCTAGCAGGAGTGGACATGATCAATCGAAATCCACGAAAAGGAACAGCCTCCATCCTGATCCTGTTGACTGATGGAGATCCCACTGCAGGTGAAACCAACATAGAGAAGATAATGGCCAATGTGAAAGAGGCAATTGGGTCAAAGTTTCCCCTCTATTGTCTTGGTTTTGGATACGATGTTAACTTTGACTTCCTGACAAAGATGTCACTTGAAAATAATGCAGTTGCTCGCAGGATTTACGAGGATTCAGACGCTGATATACAGCTTCAGggctTCTATGATGAAGTTGCCGTCCCTCTCCTCACTGATATTCAGCTTAGCTACGCAGGAGGGAAACACCTTACCAAGTCCAGCTTTGGCCTGTACTTCAATGGCTCTGAGATTGTGGTGTCAGGACAAATTACAGACAACAGTGTGGAGACTTTCACAACTGAAGTCATCGCAGTTTCAAAAGGCAATAATGTGATGTATCAAGACACTGTAATGATGAAAGACGCCAGTGACGTCAAACCCGAGAATGAAGATTTCATGCAGCGACTTTGGGCCTACCTTACAGTGAAGCAGCTCCTGGAAAGACAGGTGCTTCTCAAAGGAAAAGAGCAAGAGGATGAAAAGGAACAAGCTCTTCAACTCTCCCTGAAATACCAGTTTGTCACTCCTCTTACCTCTATGGTTGTTACTAAGCCACAGGAAGGTGAAGTGGATGTTGCAGACAAACCCAAAGAGGGTGGAGAATCACCCAGATATCCAGCAAGTCAACCCCGTCTGGTACCTTATGGTCGAAGTGGAACACCAGGATTTAGTCACCACCACTATACCACTAACTCGGGTCAACCTGGTTTGCATGCTCTACCTGGACTGCCTGGTCCACCTGGTCCACCCGATGCAAGTATCAGTTATGGAAGATTTTCTGGTGGATCACATCGCGCGTTTCTTCAGGAAGGTTTTTTCGACCAACATGATGTTGTTGCTCATAGTGATCTTTTATTGAGTTCTGCTGTGATATTGCCCACACATATGCCAAGGAGAACTTTGCCAAAGGCTACAAGTGTTGCTGGTCTTGTGCCAGTTAGTCGGTTCCTACTTCCTGCTGTTGGTCAGTCTAAGCCGCTTTGTTTTGACGTTCCTGTTCCAAACAAACTCAAACTCTTAGAAGATTCAGCTTCAGAGTTCTCTATGAATGGAGAGTCCACACATAGGCACAATGGATTCCGAAGGATTGCTTTACATTACAAATCAAACCATGACCTGGTAATAGACAAAAGGTCTATTAAATATAACGACGGCCAGAATAATGTCGAGTTCTTATGGGACCAGGAACTGACCCAACACAACGCAGAGGGTGTGTCTCTGATTCTGCAAAGCAATGAACTGGACATTACCATGGGAAATATCCGCATTGTGGTTCTTCTTCACAAGATAAATGGTCAGGTGTTTCTGTGGCCTGCTGTTCGACAACAACCAAAAGATGTCGTTTTGGCAGGGATTTTAGGGAAATCTGATGCTTCATATGATGAGATTCAAGGATCACAACCGCCGAGTTTGAAGATAAATAACCAGGAAGTGAAGGCAGACTTGGAGGATGTCAAAGACTACAGGCTTCTTTCAGCTCCGGTTATCAGATGTTGGCTGGTCTCGTTCCAGGCTGTGATGAAGGGAGATGTTTCTGATTTCACTGTCACTAAGATGTAG
>TCONS_00007062
CGAGAATGAAGATTTCATGCAGCGACTTTGGGCCTACCTTACAGTGAAGCAGCTCCTGGAAAGACAGGTGCTTCTCAAAGGAAAAGAGCAAGAGGATGAAAAGGAACAAGCTCTTCAACTCTCCCTGAAATACCAGTTTGTCACTCCTCTTACCTCTATGGTTGTTACTAAGCCACAGGAAGGTGAAGTGGATGTTGCAGACAAACCCAAAGAGGGTGGAGAATCACCCAGATATCCAGCACCAGGATTTAGTCACCACCACTATACCACTAACTCGGGTCAACCTGGTTTGCATGCTCTACCTGGACTGCCTGGTCCACCTGGTCCACCCGATGCAAGTATCAGTTATGGAAGATTTTCTGGTGGATCACATCGCGCGTTTCTTCAGGAAGACACTTTTTCTTTTCTAGGTTTTTTCGACCAACATGTGATATTGCCCACACATATGCCAAGGAGAACTTTGCCAAAGGCTACAAGTGTTGCTGGTCTTGTGCCAGTTAGTCGGTTCCTACTTCCTGCTGTTGGTCAGTCTAAGCCGCTTTGTTTTGACGTTCCTGTTCCAAACAAACTCAAACTCTTAGAAGATTCAGCTTCAGAGTTCTCTATGAATGGAGAGTCCACACATAGGCACAATGGATTCCGAAGGATTGCTTTACATTACAAATCAAACCATGACCTGGTAATAGACAAAAGGTCTATTAAATATAACGACGGCCAGAATAATGTCGAGTTCTTATGGGACCAGGAACTGACCCAACACAACGCAGAGGGGTAAATGTTCTGTCTTTTCTTCTTAACATGCAATAACTTGATTTGAGGCTAAATGAACTCTTTAACAGTTTGTATAGTAATATTTTTAATGTAGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100406

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007058 False 857 mRNA 0.42 7 37201483 37229219
TCONS_00007059 False 3195 mRNA 0.42 24 37201489 37229533
TCONS_00007060 False 2748 mRNA 0.45 25 37201501 37229098
TCONS_00007062 True 866 mRNA 0.44 8 37216668 37223768

Neighbor

gene id symbol gene type direction distance location
XLOC_003624 itih3b coding upstream 1283 37178271 ~ 37200200 (+)
XLOC_003623 NA coding upstream 31045 37136800 ~ 37170438 (+)
XLOC_003622 card19 coding upstream 99496 37095165 ~ 37101987 (+)
XLOC_003621 bicd2 coding upstream 112549 37049105 ~ 37088934 (+)
XLOC_003619 tkta coding upstream 165648 36989696 ~ 37035835 (+)
XLOC_003627 il17rc coding downstream 21306 37250839 ~ 37298938 (+)
XLOC_003628 CR936337.1 coding downstream 134913 37364446 ~ 37364560 (+)
XLOC_003629 hp1bp3 coding downstream 382681 37612214 ~ 37634030 (+)
XLOC_003630 sh2d5 coding downstream 409340 37638873 ~ 37651879 (+)
XLOC_003631 kif17 coding downstream 423337 37652870 ~ 37677206 (+)
XLOC_003369 CR854846.2 misc upstream 21078401 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 24489487 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 24507220 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 24515884 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 24521455 12679732 ~ 12680028 (+)
XLOC_003620 BX248521.3 non-coding upstream 206675 36994694 ~ 36994808 (+)
XLOC_003614 CR457444.3 non-coding upstream 542844 36657025 ~ 36658639 (+)
XLOC_003613 CR457444.4 non-coding upstream 544718 36653213 ~ 36656765 (+)
XLOC_003612 CR457444.10 non-coding upstream 588319 36612354 ~ 36613164 (+)
XLOC_003634 NA non-coding downstream 611724 37841257 ~ 37848711 (+)
XLOC_003636 NA non-coding downstream 765533 37995066 ~ 38000612 (+)
XLOC_003637 NA non-coding downstream 920355 38149888 ~ 38164754 (+)
XLOC_003640 AL929286.1 non-coding downstream 1358918 38588451 ~ 38588566 (+)

Expression


Co-expression Network