tmem168a (LOC106609249)


Basic Information

Item Value
gene id tmem168a
gene name LOC106609249
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31568395 ~ 31589029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577492.2
tacaagctagaaccgccactgacTGTTAACGTAAATAATTATCTTTCATTGATGTCACCTCTAATGGAATAATAATTTAGTGAGAGGGACAACCTCATTCGTTTTCTCAGCAAACGCAAAATCCCAGGTATGTTTGACTCATCAGCCTTGCCGTAGTTTGGAGTCCGGAAACGTCACGAACTGGAAACGAAAAAAGTTTTTCAACAAACAAGATGGCCGAATAGCCTATTTCATCTGGATCTCATCCATAATGTTGCCTAAATTCAAGTGTCCCAGTCCACTACAAAACCTACACAAGCTTGCTACTGTCAGTGTTATATCTGATCATTGAATCATGAGTCCCCCCAGTTGAATGTTCAGGAGGATTTGTTACTGCCTCAGCCACTGTCTCTACACAGCCATGTCACGCCTTGAGCCGGAGGATGAGAGCGGGCCTGGGCAGGAGCCCAGCAGGGAGGTGGACATGTGGTCGTCAGTGCGTTGCCTTGGTTACCTGTCCAGTTTCAACCTGATGGTGGCGGTATGCCTGGGCCTGTACGTGCGCTGGGAGCAGACAGACGAGCCCATGATCCTTGTTATCTTCATCCTGGGTCTCTTCGTCCTGGGCATCGCCAGCATCCTTTACTACTACTTCTCCATGGAGTCAGCCAGTCTCAGCCTCTTCCACCTGTGGTTTGGCTTTCTTCTGGGCCTCCTGTGCTTCCTCAATAGTCCCTCGCTGGAGGAGAATGTGAAGGAGCAGGCTACTAACTACCTGCTGCTGGCTAGTGTGGCTTTGAGGACGGTGTGGGCCTTAACTGATAGGATAATGGGCTGCGTTCACTATAAACCCACCCTGCTCTTGTCCGAGGAGCTCCTAGAACTCCTGGGCTTTGGAATTGCCAGCACCACCATGCTGATGCACAAATCTATTGCCCTCATTGCCCTAGTGGTGGCGCTGGGGGCTCTGATCGTGAGCCTACGTGTTAAATCCCTCCTAGCCCTGCCCAACTTGGCCTGCTTTGCCCTGGTCACCTCCCTGTTGTTCTTCAAGGCCGTGGGGATAACCACCAATCCCTTCGCCCTGGGCTGCTACCTGGGCCGTCTGATATGTGACCCCCTCTTGGACGTCTACTTCAGCAGCCTAGGGGCCACCGAGCGCTGGCTGCCCCTGCTTTCCTGGGGACGTGTCTGGCGTcgactctccctgctccctctagGGCTTGTGGAGATAGCCTTCTTCGTCCTAGCCGCTCTAAAGATGAGCCATCTAGAACTGTGGTACCTGGTGATCCCCGGattctgtgtgtttggcctgtTTTGGACAGTCTGCCATGTGGTGCTGCTGATCACACTATGGGGCTTCCACACCAAGCTGAGTGAATGTCAGAAGGCGCGCTCGATCCAGCAGTCAGACACACGCAGCCTTGACCGGGTCATGGCCTCGCGGGGGATGAGACACTTCTGCCTGATCTCTGAACGCCTGGTCTTCTTCAGCCTGGTGTCCACAGCCATACTGGCAGCTGTGTCCTGGCAGCCCTCAAATGGTGTGTTCATGAGTGTGTTCCTGGTGGTCCTCCCTCTGGAGTCTCTGGCCCACGGGCTCTTCCATGAGCTGGGCAGCTGCCTGGGGGGCACATGTGTGGGCTACGCTCTCGTCGTCCCTACCAGCTACAGCAGCCCAGACGGCCAGCCCACCCTCCTACCTCCGGACCAGGTGCAGGAGCTGAATGTGCGCTCCACGGGCATGTTGAACAGCGTGCAGCACCTCTTCTCCCACCACATGATCGAAACGTTTGGCTGTGACTACTCCACCAGCGGGGTGACTTTGGAGGCCCTCCAGGCCAAACTCAAGGCCTTCCTGGAGCTTCGCACGGCCGACGGGCCCCGCCATGATACATACGTGGTGTTCTACAGTGGGCATACGCAGCGCACCGGGGCCTGGGCACTGGCAGgaGGAGACTCTCTGCGTCTGGAGCAGCTGCTGGAGTGGTGGAAGGAGAAGAACAGCGGCTTCACCTCCCGTCTCATCCTGGTCCTGGACACGGAGAACTCCATGCCCTGGGTAAAGGAGGTCCGCAGGACGGAGGGAGTCTACTTGGCCGTGCAAGGGGCCGAGCTCGCCCCTGCTGGCGACATCGAAGGCGGGGTCGCCCCCCGCCTTGGGGACTTCACCTCGGAGTGGGTGGAGTTCAACTGCAACCCGGACAGCACCACCCAGTGGTCGGAGAAGGACAGGGCGGTGGCGGCGGCCTACGGCGTGTCGAAACACTGGAGTGACTACACGCTCCATCTTCCCACAGGGAGCGACGTGGCCGAGCACTGGAAGACCCACTTCCCCCAGGCTACCTATCCTCTGGTGCACCTATCCAACTGGTGCTGTGGGCTCAACCTCCTCTGGCTGTGTGGAGTGTGTCTGAGGTGCTTCAGGCGACTCAAACTGGGCTGGTTCCCTCCCAATATACTAGACACGGGACAGGGCATCAAACTGGTCCACTCATAGACTGACTgagctgtctgcctgcctgggagATCACTTGCCTGACCACTCACCCTGAATTGAATTCCTCTGCTCTATCAATCGCTACCTACTTTCAGTCAGAAGCTGTCATCCTAGAAGTTGACTTCAAAACAAATTCATCAGTGATTGGTTAGATTTGTTATAGACGATCCAAATCAGAGAATCAAAGTTGATAACGTCATCAGGTAGTccggctctggcccaacccatcggtttctggggCCAATCAGATTGGTCAGATTGTGTTCGCGTTCTAGAAATCGTCAGGGGGGAGGCAAATCCAGACTCATCGTGGAGAAAAAAACATCAGTTGGACGGAGCAatgtggatgggtagccaggcaaggAGACCACAATGGAGtttcagcaggtagcctagcggttaagggttggttcaaatccccgagccgactaggtgaacaaTCTTGTTGATgtggccttgagcaaggcacttaaccctaattgctcatgtAAGTTGGTCTGGATTAGAACGTCTGCGAAGtggctaaaatgtaaatgtgttgaCCTATGATCTATGGTAAGTTATGTGTAGACAATCACCAATAGAATATGTGGTAAAGTACAGTCACCACAGTAGGCCTGCTTTCTATGGTAAAGCTATAGACAATCACCGCAATCAGTCTTATTGCCATAGACTTCAACCATGCTAGTGTGGGCCTTATCTAAATGGTACAAGTAGACAATCTCCACAATATTCTGTGTATCTATGGTTTACTGACATCCACCCTATGTGCCTTTGTGAATTGAACGGGACATTGTGCTTTATTTTGAAAGTGTAATATGACATTACTCACGTGTTTTTTTTCTGGGAAGATTTTTGTAAATTGTTTGTCATGTTTATTTCCCCTTTTGAAACTGATAGTATACAGATTTTACCATTAAAATGTCTAGCCAAAGATTTTGGGACAATTTTCAAGAGTTGTGTCTTGCCTTGCGTTTGGTGTTCGTTTCTGTGGACTGACTATTTAAAATGATGAGACGAAAGCCTTATTTTAGTACCCAATTCTGTTCCATTAGATGGATCACCACAAATGTGGTTAATTCAttgattcgttttttttttttaaacattcattTTATAAATGTGCTGCATCAGTGTGAGTAGGAGGAGGGAGTGTTGACAATTGGTCAGCCTGACAGGATCCATATAGCTGCAGGGATATACAGTACACAGCTCCCTGCCTGGCGCCACTTTCCTGCAGTTGTTTTGGAGTCAAATCCACCGTTAAAACAATGACTCACCACATGTAGCCTATCATTGAATCACTACGGCTGCGATGGCCATGGTGACCCATATTGGCCAACCTTTCTGCTTCATTTggtgctctctctcgctctttcgctGCGATGCTGCCTTTTATGATACACTGTGATGTTTATGCTAAAAAGGTCCAATTGTATTATTCTACATATAAATGAAAGCCGAGCTTTTTGTCTCGCTATGTCTTTGATGTCCTGATAAGAGCCGATGTGATGCCTTATCTCAGATTATGCTTGAATAATAAAGTGAATATGTAAAACGTTGA

Function

NR:

description
transmembrane protein 168-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577492.2 True 4046 mRNA 0.51 5 31568395 31589029

Neighbor

gene id symbol gene type direction distance location
LOC110500240 LOC106609248 coding upstream 70565 31493462 ~ 31497830 (+)
LOC118942919 NA coding upstream 102548 31464252 ~ 31465847 (+)
LOC110500239 LOC106609244 coding upstream 131556 31427827 ~ 31436839 (+)
trnaa-ugc-149 NA coding upstream 464183 31104142 ~ 31104212 (+)
LOC110500235 LOC106609242 coding upstream 502744 31046030 ~ 31065651 (+)
LOC110500245 LOC106609252 coding downstream 91911 31680940 ~ 31684896 (+)
LOC110500244 LOC106609251 coding downstream 96378 31685407 ~ 31736831 (+)
LOC110500247 LOC106609254 coding downstream 156744 31745773 ~ 31800121 (+)
LOC110500249 timp3 coding downstream 284519 31873548 ~ 31894544 (+)
LOC110501063 LOC106609150 coding downstream 525384 32114413 ~ 32144886 (+)
G1727224 NA non-coding upstream 234 31567955 ~ 31568161 (+)
G1727215 NA non-coding upstream 15606 31552493 ~ 31552789 (+)
G1727204 NA non-coding upstream 34806 31533328 ~ 31533589 (+)
G1727203 NA non-coding upstream 36140 31532018 ~ 31532255 (+)
G1727200 NA non-coding upstream 39685 31528482 ~ 31528710 (+)
G1727427 NA non-coding downstream 11762 31600791 ~ 31601136 (+)
G1727468 NA non-coding downstream 69326 31658355 ~ 31658590 (+)
G1727480 NA non-coding downstream 89449 31678478 ~ 31678731 (+)
G1728051 NA non-coding downstream 608490 32197519 ~ 32220621 (+)
G1727220 NA other upstream 3801 31564135 ~ 31564594 (+)
G1727181 NA other upstream 60023 31508056 ~ 31508372 (+)
G1727146 NA other upstream 118278 31449396 ~ 31450117 (+)
G1726863 NA other upstream 427305 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 684782 30881776 ~ 30889293 (+)
LOC110500252 LOC106609149 other downstream 568883 32153116 ~ 32162456 (+)
G1729465 NA other downstream 1732424 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 2121063 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3850260 35439289 ~ 35484354 (+)

Expression


Co-expression Network