LOC110500244 (LOC106609251)


Basic Information

Item Value
gene id LOC110500244
gene name LOC106609251
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31685407 ~ 31736831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577494.2
TTCAACCCGCCTAGGATGTACCATTCGAAAGTCAAGGTAGTCCGAGCCGCCCGAAGGCATACCTCTACTCCAAGCAGGAGTCTGGAGAACATCGAGGCGGTCTGGTGCAAGATCAGAGCGGACTCGTTACCAAACCTCGAAGAGAGAAGACCGGAGCCGGTGAAGGTGATGAACCCCGCGGAGAACGGCTGCCCTGTCCGCGGCAGTAGGAAAAGGGGGTTCAAGCCCCCGGATGTGAGGACCATATTCTCCCCCAGTGAGAGAGACTCCCAGATGAGGGGGGAGGGACACACCTTCTACCTTGGTCTTTCGGGCGCATGGTGCGATGTTTGCCGCGTATACATCCTCCACTTCTCCCTGATGTGTTCAGgGTGTAAGTATACGTGTCACCCAGAGTGTCGGGAGCGAGTGTCATTGGACTGTCCCCCCGGTGGTCCTGTTGCCGCTGACACCCCCCTCAGCCAGGACCACCTTAACAACAACACACCGGCCATTGATGTGGAGCAGGAAAGAGAGTTACGGACTCATCTCAGCAGAGAGGAGATCAGACAGAAGGTCGAGCTGTACAACTCCTCCTCCAAGGACCACCTCAAAATGACCCTGAACCCCAGTGGTGTGTATACAGGGTTCATTAAGGTGCAGTTGGAGCTGAGGAGACCCGTCACAGTACGAGGgggccagggaggagaggaggccttCTACCTCCCCCAGGGGGCGATTAACACTCTTCACATCAGCTCCAACAACACCGTACGGCAGGTGATTCAGGCCCTGTTGACCAAGTTCACTGTAGCTGACAACCCTGCTAAATATGCCCTGTACAAACGCTGCCGCAGGGATGAGcaagAGTACATGTGTAAGCTGTCGGAGGGAGAGCATCCGTTGTTCCTGCGTCTGCTAGCAGGTCCCAACACCGACACGCTGGGCTTTGTCCTGAGAGAACAGCAGACTGGCGAGGTCATGtGGGAAGCGTTCTCCATCCCAGAGTTGAGTAACTTCCTAAGGATGCTGGAGAAGGAGGAGACTGAGCGGGTGTGTTCCGTGACGCGTCGCTACGACAACTACAGACTCAAACTGCAGGAGGCCATGAGAGCAGCAGGGGGGCCGGGGTAACTACTGTCCCcggaggagagagggctgggaaCCAGAATCCAGTCTGAGGGACACTGAGGGGGAAACTGGTCCAACCTGATTCAGAAACTGGAGAGAGCTGGAATAAACTCTAGATTGTACCTGTGGACCCTATGTGCAATACACTAGATGGACACTAGAGGGCATCTGTGGTTCCACTGCGTTCAGCCTGGACTTGGCATTAAGCACTCAAGAGACTAGCTCCATGTCTTTACTGAGTAGGCCTACACCCCTGTGTGCCATATCCACTCTTCTGTTCACTCTTTTGATCCTTCTGGTTATTGCCTTTTTTAAATTCTTTTAGAATTACCTTTTTGAATAGGTGAATGATTCAAACCCCCGAATATTTGAATCCATTTATTTAGCATTTTTATTTAATTGGTGGATGCAAGGGTTTGTACATATTGTCGTTTTTAATTTATGTGGGTGAAGCTTTGTTctgtttctttgcagaaattgtTTTATTGTGTTCTATGAAGGCGTGGCAGCAATCCAACCCCCAAAGGGCCGACTCGTGTGCTCACTGATTTCTCTCACAGGGGTTAATGCACAGAAAACATATCAGCAACATAAAGGCTACTGGTTTATCATGGAAAGGACACAGTATTAGATGGACAGGATGAAATAGAAACTAGAAAAGGCAAATGATACAGACCAGAATAAGAGTGGTGTATTTAAACTGAAGGTTGTGAGGGTCTTGAAAGGAGAAGAATATTTGGTGCAGTTTGTAGAGTCTGGCAGTCACAAGCTGTTTGGGGTTTAGAGGTCAGGATGGAAGTGTGACCGcttgtgaccagactgacagtgGAGTTTGAGCTGACCGCTCACCTTTGACCTCTGGACAGAGACTAGTTGTATCAGAGGAGAAGAGGTTAGCGCTGTGAGAATGGAAAGATTTTAGGAAGTTGACTAATGGTTTTAGAGGAAGTAGATAAGTaacactgtaaaaaaaaca
>XM_021577495.2
GTGTTAGTGAATGAGCAATGGGGCTGGCTAAAGGATTTGGGAGGACTCTGAGGAGGTTATCAGGTTTCTTCTTCCGTGTTCCCAAACTGATCCGCCGCTCTGGACGCCTGGAACTAAGCCTACTTTGGAGGAActctggGTGTAAGTATACGTGTCACCCAGAGTGTCGGGAGCGAGTGTCATTGGACTGTCCCCCCGGTGGTCCTGTTGCCGCTGACACCCCCCTCAGCCAGGACCACCTTAACAACAACACACCGGCCATTGATGTGGAGCAGGAAAGAGAGTTACGGACTCATCTCAGCAGAGAGGAGATCAGACAGAAGGTCGAGCTGTACAACTCCTCCTCCAAGGACCACCTCAAAATGACCCTGAACCCCAGTGGTGTGTATACAGGGTTCATTAAGGTGCAGTTGGAGCTGAGGAGACCCGTCACAGTACGAGGgggccagggaggagaggaggccttCTACCTCCCCCAGGGGGCGATTAACACTCTTCACATCAGCTCCAACAACACCGTACGGCAGGTGATTCAGGCCCTGTTGACCAAGTTCACTGTAGCTGACAACCCTGCTAAATATGCCCTGTACAAACGCTGCCGCAGGGATGAGcaagAGTACATGTGTAAGCTGTCGGAGGGAGAGCATCCGTTGTTCCTGCGTCTGCTAGCAGGTCCCAACACCGACACGCTGGGCTTTGTCCTGAGAGAACAGCAGACTGGCGAGGTCATGtGGGAAGCGTTCTCCATCCCAGAGTTGAGTAACTTCCTAAGGATGCTGGAGAAGGAGGAGACTGAGCGGGTGTGTTCCGTGACGCGTCGCTACGACAACTACAGACTCAAACTGCAGGAGGCCATGAGAGCAGCAGGGGGGCCGGGGTAACTACTGTCCCcggaggagagagggctgggaaCCAGAATCCAGTCTGAGGGACACTGAGGGGGAAACTGGTCCAACCTGATTCAGAAACTGGAGAGAGCTGGAATAAACTCTAGATTGTACCTGTGGACCCTATGTGCAATACACTAGATGGACACTAGAGGGCATCTGTGGTTCCACTGCGTTCAGCCTGGACTTGGCATTAAGCACTCAAGAGACTAGCTCCATGTCTTTACTGAGTAGGCCTACACCCCTGTGTGCCATATCCACTCTTCTGTTCACTCTTTTGATCCTTCTGGTTATTGCCTTTTTTAAATTCTTTTAGAATTACCTTTTTGAATAGGTGAATGATTCAAACCCCCGAATATTTGAATCCATTTATTTAGCATTTTTATTTAATTGGTGGATGCAAGGGTTTGTACATATTGTCGTTTTTAATTTATGTGGGTGAAGCTTTGTTctgtttctttgcagaaattgtTTTATTGTGTTCTATGAAGGCGTGGCAGCAATCCAACCCCCAAAGGGCCGACTCGTGTGCTCACTGATTTCTCTCACAGGGGTTAATGCACAGAAAACATATCAGCAACATAAAGGCTACTGGTTTATCATGGAAAGGACACAGTATTAGATGGACAGGATGAAATAGAAACTAGAAAAGGCAAATGATACAGACCAGAATAAGAGTGGTGTATTTAAACTGAAGGTTGTGAGGGTCTTGAAAGGAGAAGAATATTTGGTGCAGTTTGTAGAGTCTGGCAGTCACAAGCTGTTTGGGGTTTAGAGGTCAGGATGGAAGTGTGACCGcttgtgaccagactgacagtgGAGTTTGAGCTGACCGCTCACCTTTGACCTCTGGACAGAGACTAGTTGTATCAGAGGAGAAGAGGTTAGCGCTGTGAGAATGGAAAGATTTTAGGAAGTTGACTAATGGTTTTAGAGGAAGTAGATAAGTaacactgtaaaaaaaaca
>XM_021577496.2
TGAGGCAGGAGGGAAATGGTGTGCTGGTCGGGGATGGGAGCAGCCATCTGTAGACTGTCGGTGAAGCTCAGCCGGCAGGTGAAGAGGAGGTCCTCAGgGTGTAAGTATACGTGTCACCCAGAGTGTCGGGAGCGAGTGTCATTGGACTGTCCCCCCGGTGGTCCTGTTGCCGCTGACACCCCCCTCAGCCAGGACCACCTTAACAACAACACACCGGCCATTGATGTGGAGCAGGAAAGAGAGTTACGGACTCATCTCAGCAGAGAGGAGATCAGACAGAAGGTCGAGCTGTACAACTCCTCCTCCAAGGACCACCTCAAAATGACCCTGAACCCCAGTGGTGTGTATACAGGGTTCATTAAGGTGCAGTTGGAGCTGAGGAGACCCGTCACAGTACGAGGgggccagggaggagaggaggccttCTACCTCCCCCAGGGGGCGATTAACACTCTTCACATCAGCTCCAACAACACCGTACGGCAGGTGATTCAGGCCCTGTTGACCAAGTTCACTGTAGCTGACAACCCTGCTAAATATGCCCTGTACAAACGCTGCCGCAGGGATGAGcaagAGTACATGTGTAAGCTGTCGGAGGGAGAGCATCCGTTGTTCCTGCGTCTGCTAGCAGGTCCCAACACCGACACGCTGGGCTTTGTCCTGAGAGAACAGCAGACTGGCGAGGTCATGtGGGAAGCGTTCTCCATCCCAGAGTTGAGTAACTTCCTAAGGATGCTGGAGAAGGAGGAGACTGAGCGGGTGTGTTCCGTGACGCGTCGCTACGACAACTACAGACTCAAACTGCAGGAGGCCATGAGAGCAGCAGGGGGGCCGGGGTAACTACTGTCCCcggaggagagagggctgggaaCCAGAATCCAGTCTGAGGGACACTGAGGGGGAAACTGGTCCAACCTGATTCAGAAACTGGAGAGAGCTGGAATAAACTCTAGATTGTACCTGTGGACCCTATGTGCAATACACTAGATGGACACTAGAGGGCATCTGTGGTTCCACTGCGTTCAGCCTGGACTTGGCATTAAGCACTCAAGAGACTAGCTCCATGTCTTTACTGAGTAGGCCTACACCCCTGTGTGCCATATCCACTCTTCTGTTCACTCTTTTGATCCTTCTGGTTATTGCCTTTTTTAAATTCTTTTAGAATTACCTTTTTGAATAGGTGAATGATTCAAACCCCCGAATATTTGAATCCATTTATTTAGCATTTTTATTTAATTGGTGGATGCAAGGGTTTGTACATATTGTCGTTTTTAATTTATGTGGGTGAAGCTTTGTTctgtttctttgcagaaattgtTTTATTGTGTTCTATGAAGGCGTGGCAGCAATCCAACCCCCAAAGGGCCGACTCGTGTGCTCACTGATTTCTCTCACAGGGGTTAATGCACAGAAAACATATCAGCAACATAAAGGCTACTGGTTTATCATGGAAAGGACACAGTATTAGATGGACAGGATGAAATAGAAACTAGAAAAGGCAAATGATACAGACCAGAATAAGAGTGGTGTATTTAAACTGAAGGTTGTGAGGGTCTTGAAAGGAGAAGAATATTTGGTGCAGTTTGTAGAGTCTGGCAGTCACAAGCTGTTTGGGGTTTAGAGGTCAGGATGGAAGTGTGACCGcttgtgaccagactgacagtgGAGTTTGAGCTGACCGCTCACCTTTGACCTCTGGACAGAGACTAGTTGTATCAGAGGAGAAGAGGTTAGCGCTGTGAGAATGGAAAGATTTTAGGAAGTTGACTAATGGTTTTAGAGGAAGTAGATAAGTaacactgtaaaaaaaaca
>XM_021577497.2
TTCTAGTAGGCGTGTCTTCAGAGCGGCTGACAGACGGCGGCTCCATAGTTGCTAGAGTGTGAGGATTCATCAGTAGTTGGTTGAAGAGTGAACGGAGGATTCGAGCGTTGGAAAGTGTTCGGCTTTTTGCGGTTCACAAAACAAGTTTGCGGAGGTGTAGCCAACTTTATTTTCAAGTTGTTGCTTTGCTGCAGCCAAATTTGAAGAGATTAGTTTTCTCCTCAAATGACGTGGACTAGCACCATGAGTAGTGGCTACAGTAGTTTAGAGGAGGACTCCGAAGAGTATTTTTTCACCGCCAGAACTTCGTTCTTCAGGAAGCCTTCAGGGAAACCAACCCAGTGCAAGGATGTGGAGCAGGAAAGAGAGTTACGGACTCATCTCAGCAGAGAGGAGATCAGACAGAAGGTCGAGCTGTACAACTCCTCCTCCAAGGACCACCTCAAAATGACCCTGAACCCCAGTGGTGTGTATACAGGGTTCATTAAGGTGCAGTTGGAGCTGAGGAGACCCGTCACAGTACGAGGgggccagggaggagaggaggccttCTACCTCCCCCAGGGGGCGATTAACACTCTTCACATCAGCTCCAACAACACCGTACGGCAGGTGATTCAGGCCCTGTTGACCAAGTTCACTGTAGCTGACAACCCTGCTAAATATGCCCTGTACAAACGCTGCCGCAGGGATGAGcaagAGTACATGTGTAAGCTGTCGGAGGGAGAGCATCCGTTGTTCCTGCGTCTGCTAGCAGGTCCCAACACCGACACGCTGGGCTTTGTCCTGAGAGAACAGCAGACTGGCGAGGTCATGtGGGAAGCGTTCTCCATCCCAGAGTTGAGTAACTTCCTAAGGATGCTGGAGAAGGAGGAGACTGAGCGGGTGTGTTCCGTGACGCGTCGCTACGACAACTACAGACTCAAACTGCAGGAGGCCATGAGAGCAGCAGGGGGGCCGGGGTAACTACTGTCCCcggaggagagagggctgggaaCCAGAATCCAGTCTGAGGGACACTGAGGGGGAAACTGGTCCAACCTGATTCAGAAACTGGAGAGAGCTGGAATAAACTCTAGATTGTACCTGTGGACCCTATGTGCAATACACTAGATGGACACTAGAGGGCATCTGTGGTTCCACTGCGTTCAGCCTGGACTTGGCATTAAGCACTCAAGAGACTAGCTCCATGTCTTTACTGAGTAGGCCTACACCCCTGTGTGCCATATCCACTCTTCTGTTCACTCTTTTGATCCTTCTGGTTATTGCCTTTTTTAAATTCTTTTAGAATTACCTTTTTGAATAGGTGAATGATTCAAACCCCCGAATATTTGAATCCATTTATTTAGCATTTTTATTTAATTGGTGGATGCAAGGGTTTGTACATATTGTCGTTTTTAATTTATGTGGGTGAAGCTTTGTTctgtttctttgcagaaattgtTTTATTGTGTTCTATGAAGGCGTGGCAGCAATCCAACCCCCAAAGGGCCGACTCGTGTGCTCACTGATTTCTCTCACAGGGGTTAATGCACAGAAAACATATCAGCAACATAAAGGCTACTGGTTTATCATGGAAAGGACACAGTATTAGATGGACAGGATGAAATAGAAACTAGAAAAGGCAAATGATACAGACCAGAATAAGAGTGGTGTATTTAAACTGAAGGTTGTGAGGGTCTTGAAAGGAGAAGAATATTTGGTGCAGTTTGTAGAGTCTGGCAGTCACAAGCTGTTTGGGGTTTAGAGGTCAGGATGGAAGTGTGACCGcttgtgaccagactgacagtgGAGTTTGAGCTGACCGCTCACCTTTGACCTCTGGACAGAGACTAGTTGTATCAGAGGAGAAGAGGTTAGCGCTGTGAGAATGGAAAGATTTTAGGAAGTTGACTAATGGTTTTAGAGGAAGTAGATAAGTaacactgtaaaaaaaaca

Function

NR:

description
ras association domain-containing protein 3-like isoform X4

GO: NA

KEGG:

id description
K09852 RASSF3; Ras association domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577494.2 False 2086 mRNA 0.50 7 31685407 31736831
XM_021577495.2 False 1854 mRNA 0.49 7 31692286 31736831
XM_021577496.2 False 1813 mRNA 0.49 7 31695031 31736831
XM_021577497.2 True 1939 mRNA 0.48 6 31711203 31736831

Neighbor

gene id symbol gene type direction distance location
LOC110500245 LOC106609252 coding upstream 511 31680940 ~ 31684896 (+)
tmem168a LOC106609249 coding upstream 96378 31568395 ~ 31589029 (+)
LOC110500240 LOC106609248 coding upstream 187577 31493462 ~ 31497830 (+)
LOC118942919 NA coding upstream 219560 31464252 ~ 31465847 (+)
LOC110500239 LOC106609244 coding upstream 248568 31427827 ~ 31436839 (+)
LOC110500247 LOC106609254 coding downstream 8942 31745773 ~ 31800121 (+)
LOC110500249 timp3 coding downstream 136717 31873548 ~ 31894544 (+)
LOC110501063 LOC106609150 coding downstream 377582 32114413 ~ 32144886 (+)
LOC110500252 LOC106609149 coding downstream 416285 32153116 ~ 32162456 (+)
LOC110500253 LOC106609146 coding downstream 431969 32168800 ~ 32180603 (+)
G1727480 NA non-coding upstream 6676 31678478 ~ 31678731 (+)
G1727468 NA non-coding upstream 26817 31658355 ~ 31658590 (+)
G1727427 NA non-coding upstream 84271 31600791 ~ 31601136 (+)
G1727224 NA non-coding upstream 117246 31567955 ~ 31568161 (+)
G1727215 NA non-coding upstream 132618 31552493 ~ 31552789 (+)
G1728051 NA non-coding downstream 460688 32197519 ~ 32220621 (+)
G1728052 LOC106609139 non-coding downstream 499490 32236321 ~ 32239087 (+)
G1728064 NA non-coding downstream 503145 32239976 ~ 32240175 (+)
G1728054 LOC106609139 non-coding downstream 504605 32241436 ~ 32243283 (+)
G1727220 NA other upstream 120813 31564135 ~ 31564594 (+)
G1727181 NA other upstream 177035 31508056 ~ 31508372 (+)
G1727146 NA other upstream 235290 31449396 ~ 31450117 (+)
G1726863 NA other upstream 544317 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 801794 30881776 ~ 30889293 (+)
G1729465 NA other downstream 1584622 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1973261 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3702458 35439289 ~ 35484354 (+)

Expression


Co-expression Network