LOC110500247 (LOC106609254)


Basic Information

Item Value
gene id LOC110500247
gene name LOC106609254
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31745773 ~ 31800121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957656.1
GCAACAGATGCAACGGTATGCAGCACGCCGATGTGCTATCAAAAGCTCAAGTTCAGCAGCGCCACTCCGTGTCTTGCAGCTGACCCTCGTTTGGAGATGATACCTTGACAGTGCTTGTGGTTGACCACGGTTCAGACTGCTTTGATCAGAGGACAAGTAGCGGTGTCCACCTTGCGCTCCTCTCTTCTGGAGCCCTAGGTCCGAAGTTGTTGGATTCTCTTCGGAACGCTGGGTCCGAATCTGTTGGATTCGAGTCAAGATATCGCCTCACCTTGTTACAATTTGTAGAAACACTGATTAACTTTTGTTCCTCCATCGCAACTGCTTTCAGAACAAGGATTGTTTTACATTGACCAATCGTTTGACATCCCAGCTCCCGTGTCTGGAACTGAGGATGGGTGGCTGAACCCGGAACCCGCTGTGTGATCTATCGGCTCTGTGATTGGTCCGTTCTGGTTCCGGTCGCTACCTGCTGCCATGGCGAAGAGTCCCGAGATGAAGCTGGCCGTTTTCGGTAGAGCAGGAGTGGGTAAATCAGAATCAACATATCGCCATCAAGCAACCATAGACGATGAGGTTGTGACCATGGAGATCCTTGACACAGCCGGACAGGAGGACACGCAGCAGAAGGAGAGCCACATGCGCTGGGGCGATGGCTTCGTCATTGTCTATGACATCACTGACCGGGGCAGCTTTGACGAAGTGGCTCCTTTGCGAGGCCTCCTAGAGGAAGTCAAGAAACCCAAGAATGTCCCGTTGGTTCTGGTGGGCAACAAAGCCGATCTAGACCATGCCCGACAGGTGGGCACAGAGGAGGGTGAGCGGCTGGCTGCCGAGATGGCGTGCGCCTTCTACGAGTGCTCGGCGTGCGCCGACGAGGGTGGCATGGTGGCGGAAGCATTCCATGAGCTGTGTCGCGAGTTGAGGCGCCGCAAGGTGGTCCAAGGCAAGGCCAGGCGCCGTAGCTCCACCACCCACGTCAAGCAGGCCATCAACAAGATGCTGACCAAGATCAGCAGCTAGGGGGAGCCGCTGAGCACACTCCACAAAGAGGATAAACTCAAGAAAAACTAAAGAACAAAGTGACTGATTTCAAGGGTTTAGATGTGTAGAAATATCACGCAGCCATCAAAGCTCCTAAAGAGCACAAATATAAAATGATGAATGAACAGCGAACCTCTTCGTACTTAGTATCAATGCACAATCAATGAAGATTTGCATTGATACCGAGTGTGCCAAAAATCGCTCTCCATTCAACACTGATTCTAAAGGGGAAGGTTGTAGGCCATTATTACTCGCTCTTTGACCACGCTCCACAACTAAGGTCAGAAGCACAAAGGGGAACATAATAATCACATGATGGGAACTACTTTGTCTGTGAGGGAGGTGAAGATGCTTTTGTTTCATAGCCAACTGGGACATTTCTGTATACTGCCAAGGAAGGGGGGAGAGTCCGTTATTCAGAAATCCCAAATCTCTGAAATTCACTCTCCCTTCTTGAGCAGCATGGTGAATACCCCAGTTTTGTGTCTCCACCAACTTTAAAGAAAATATTGTCCATGAACCCACCCTTTGTTTATTAGAAATAATGGACAAACCATTTGTAGTTTCCTGTAGCTTGTTTGTGGGATAATGTTTTGATATGCTCTaggccagtgtttcccaaccctggtcctccagtacacaTCCTTATTGTAAACCTAGACAAGCACACCTCGTTCCACTTGTcagctaatcatcaagccctcaatgagttgcgTTAatccagggctacaacaaaaatgtgtacgAGGACCGGTGTTGGGAAACACGTCTCTAGGTCAACGGATGTATGTTCTTTGAGCAGCGTTAAAAGATTCATGAAACATCAACAGTTTTCATGGTCTTAGATCATTATGTCGTCCGTTTGCAGAGCTCTGTTGGCCTTGGGTACTTGTTGACCTTAGACATATCCTTTGAGCTGTGACACGATTGGTCAAATAAACAATTGTCCATCATACTATGTCTCCCTCAACCCCCATCTCATACCAAGCATAGGACAGGGCTATAGAGATCATATCTCAAATATGTTTTTCATCTAAAGAacctaagaggaggaggaggagaccaaAGTTTTCAGTTTAAATCAACGCTAATACTGTTTCATGGTATCGTCCATCCATCATTCCGGTTCAAATTCCAGGAACGTTCTAAATGTACCTTAATTGTAAACTATGTATAATATTGCCTTTATCATTGGTCTCAAAGGagtgtacagtacataacccagAGGCAGACAAAATGGTCGATATGTCTCCTATATTTTAACCAAATGCTGTTCCTTTGTTAACGAATGTACCTGAGCTGACTGAGTTTTGAGAATGGGGATACAATGGACAAATTTGCTGTGCAATTGTAATTAAACATTAGATACATGTATATCCAA
>XM_021577499.2
TGCAACGGTATGCAGCACGCCGATGTGCTATCAAAAGCTCAAGTTCAGCAGCGCCACTCCGTGTCTTGCAGCTGACCCTCGTTTGGAGATGATACCTTGACAGTGCTTGTGGTTGACCACGGTTCAGACTGCTTTGATCAGAGGACAAGTAGCGGTGTCCACCTTGCGCTCCTCTCTTCTGGAGCCCTAGGTCCGAAGTTGTTGGATTCTCTTCGGAACGCTGGGTCCGAATCTGTTGGATTCGAGTCAAGATATCGCCTCACCTTGTTACAATTTGTAGAAACACTGATTAACTTTTGTTCCTCCATCGCAACTGCTTTCAGAACAAGGATTGTTTTACATTGACCAATCGTTTGACATCCCAGCTCCCGTGTCTGGAACTGAGGATGGGTGGCTGAACCCGGAACCCGCTGTGTGATCTATCGGCTCTGTGATTGGTCCGTTCTGGTTCCGGTCGCTACCTGCTGCCATGGCGAAGAGTCCCGAGATGAAGCTGGCCGTTTTCGGTAGAGCAGGAGTGGGTAAATCAGcTCTAGTGGTGAGGTTTCTGACCAGACGTTTCATCTGGGAGTATGACCCAACGCTTGAATCAACATATCGCCATCAAGCAACCATAGACGATGAGGTTGTGACCATGGAGATCCTTGACACAGCCGGACAGGAGGACACGCAGCAGAAGGAGAGCCACATGCGCTGGGGCGATGGCTTCGTCATTGTCTATGACATCACTGACCGGGGCAGCTTTGACGAAGTGGCTCCTTTGCGAGGCCTCCTAGAGGAAGTCAAGAAACCCAAGAATGTCCCGTTGGTTCTGGTGGGCAACAAAGCCGATCTAGACCATGCCCGACAGGTGGGCACAGAGGAGGGTGAGCGGCTGGCTGCCGAGATGGCGTGCGCCTTCTACGAGTGCTCGGCGTGCGCCGACGAGGGTGGCATGGTGGCGGAAGCATTCCATGAGCTGTGTCGCGAGTTGAGGCGCCGCAAGGTGGTCCAAGGCAAGGCCAGGCGCCGTAGCTCCACCACCCACGTCAAGCAGGCCATCAACAAGATGCTGACCAAGATCAGCAGCTAGGGGGAGCCGCTGAGCACACTCCACAAAGAGGATAAACTCAAGAAAAACTAAAGAACAAAGTGACTGATTTCAAGGGTTTAGATGTGTAGAAATATCACGCAGCCATCAAAGCTCCTAAAGAGCACAAATATAAAATGATGAATGAACAGCGAACCTCTTCGTACTTAGTATCAATGCACAATCAATGAAGATTTGCATTGATACCGAGTGTGCCAAAAATCGCTCTCCATTCAACACTGATTCTAAAGGGGAAGGTTGTAGGCCATTATTACTCGCTCTTTGACCACGCTCCACAACTAAGGTCAGAAGCACAAAGGGGAACATAATAATCACATGATGGGAACTACTTTGTCTGTGAGGGAGGTGAAGATGCTTTTGTTTCATAGCCAACTGGGACATTTCTGTATACTGCCAAGGAAGGGGGGAGAGTCCGTTATTCAGAAATCCCAAATCTCTGAAATTCACTCTCCCTTCTTGAGCAGCATGGTGAATACCCCAGTTTTGTGTCTCCACCAACTTTAAAGAAAATATTGTCCATGAACCCACCCTTTGTTTATTAGAAATAATGGACAAACCATTTGTAGTTTCCTGTAGCTTGTTTGTGGGATAATGTTTTGATATGCTCTaggccagtgtttcccaaccctggtcctccagtacacaTCCTTATTGTAAACCTAGACAAGCACACCTCGTTCCACTTGTcagctaatcatcaagccctcaatgagttgcgTTAatccagggctacaacaaaaatgtgtacgAGGACCGGTGTTGGGAAACACGTCTCTAGGTCAACGGATGTATGTTCTTTGAGCAGCGTTAAAAGATTCATGAAACATCAACAGTTTTCATGGTCTTAGATCATTATGTCGTCCGTTTGCAGAGCTCTGTTGGCCTTGGGTACTTGTTGACCTTAGACATATCCTTTGAGCTGTGACACGATTGGTCAAATAAACAATTGTCCATCATACTATGTCTCCCTCAACCCCCATCTCATACCAAGCATAGGACAGGGCTATAGAGATCATATCTCAAATATGTTTTTCATCTAAAGAacctaagaggaggaggaggagaccaaAGTTTTCAGTTTAAATCAACGCTAATACTGTTTCATGGTATCGTCCATCCATCATTCCGGTTCAAATTCCAGGAACGTTCTAAATGTACCTTAATTGTAAACTATGTATAATATTGCCTTTATCATTGGTCTCAAAGGagtgtacagtacataacccagAGGCAGACAAAATGGTCGATATGTCTCCTATATTTTAACCAAATGCTGTTCCTTTGTTAACGAATGTACCTGAGCTGACTGAGTTTTGAGAATGGGGATACAATGGACAAATTTGCTGTGCAATTGTAATTAAACATTAGATACATGTATATCCAA

Function

NR:

description
PREDICTED: ras-related and estrogen-regulated growth inhibitor-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07855 RERG; Ras-related and estrogen-regulated growth inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957656.1 False 2425 mRNA 0.47 4 31745773 31800121
XM_021577499.2 True 2474 mRNA 0.47 5 31745781 31800121

Neighbor

gene id symbol gene type direction distance location
LOC110500244 LOC106609251 coding upstream 8942 31685407 ~ 31736831 (+)
LOC110500245 LOC106609252 coding upstream 60877 31680940 ~ 31684896 (+)
tmem168a LOC106609249 coding upstream 156744 31568395 ~ 31589029 (+)
LOC110500240 LOC106609248 coding upstream 247943 31493462 ~ 31497830 (+)
LOC118942919 NA coding upstream 279926 31464252 ~ 31465847 (+)
LOC110500249 timp3 coding downstream 73427 31873548 ~ 31894544 (+)
LOC110501063 LOC106609150 coding downstream 314292 32114413 ~ 32144886 (+)
LOC110500252 LOC106609149 coding downstream 352995 32153116 ~ 32162456 (+)
LOC110500253 LOC106609146 coding downstream 368679 32168800 ~ 32180603 (+)
LOC110501065 LOC106609145 coding downstream 389421 32189542 ~ 32217794 (+)
G1727480 NA non-coding upstream 67042 31678478 ~ 31678731 (+)
G1727468 NA non-coding upstream 87183 31658355 ~ 31658590 (+)
G1727427 NA non-coding upstream 144637 31600791 ~ 31601136 (+)
G1727224 NA non-coding upstream 177612 31567955 ~ 31568161 (+)
G1727215 NA non-coding upstream 192984 31552493 ~ 31552789 (+)
G1728051 NA non-coding downstream 397398 32197519 ~ 32220621 (+)
G1728052 LOC106609139 non-coding downstream 436200 32236321 ~ 32239087 (+)
G1728064 NA non-coding downstream 439855 32239976 ~ 32240175 (+)
G1728054 LOC106609139 non-coding downstream 441315 32241436 ~ 32243283 (+)
G1727220 NA other upstream 181179 31564135 ~ 31564594 (+)
G1727181 NA other upstream 237401 31508056 ~ 31508372 (+)
G1727146 NA other upstream 295656 31449396 ~ 31450117 (+)
G1726863 NA other upstream 604683 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 862160 30881776 ~ 30889293 (+)
G1729465 NA other downstream 1521332 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1909971 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3639168 35439289 ~ 35484354 (+)

Expression


Co-expression Network