LOC110500253 (LOC106609146)


Basic Information

Item Value
gene id LOC110500253
gene name LOC106609146
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32168800 ~ 32180603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577509.2
caggagagagagagggaaaaggagcaagaacaggagagagagagggaaaatgagcaagaacgggagagagagagggaaagggggagggataaagattgggaaagagacagagatggagaaatTGTCATCCCAACCCCAAAGACCACTCCCAAACTCGGCATCGCACCCACCGCtaccacaaaaacacacacccacacacacactcatgccccGTCCCCCTCCCCTAGCACAGGGCCCCCTCCAGCCCGGGATCACAAGCACACCCATGTCCCCTCAGCGGGTCCCACCCCTCCCCTGACCCTCTCACCCACTCCCTGGGATGGTCAGGGTACCCTCACCCCTGGAGTTAGACCCACTTCCAGAGTACCCCCTCAGCCTCCTGTTCCGCGGCCCAGAGTCCCCCCAGCTACTCCTGGCAGACACCCTCCACTGCCCCCCTCGAACACCACCAGCCTGGCTCGCCCCCCCATGCTGCGACCTCCAGGGAGGGACCCTATAAAACCCCCACCACCCGTGACCTATGTCCCCGGCAACCGACCGACGACCACTACCAAGGCAACCACTGTTACCACGACAACCACTGGCACCCTGGCGAGCGTCACCTGGACTCCCCCAGTCCAGGCCCCTCCAGGACGCCAGTACCTGTGTAACGTCACCAAGCCTGACATGTACCTGGTCAGAGTGGTCCTGCCTAAGTCTGCCTCCACTGTGGGCTTTGGCCAGGTCAGGGACATCTTGAAGAGGGAGTTCAACTGCTCAGTGGAGCTACAGGTCCTGAGAACTCCGTCTAGCTTTGCGTTCCGTGCTGTGGCGGGACCTCTGATCTTCAACGCCATGTCTGTCATCAACGCTCTGCGCCAGTCAACACCAGGCTCCTCCTCGTTACCCACTGTCTCACCCCTCTACAGCATACCTGATCACAAGTACCAGATACACTCTGtGCTGCAGTTCGTGCCCAGTCACgtggatgtgcgtgtgtgtaacttCAGTGAGCGAGTAGAGAGAGGATTGCTGATGGCCTACACAGAGACACGCCGACGCGCATATGAATTTGGCAATGTTACTGTACAGCTTCTGAACATCACCATGGGTCAGGCCAAGCCACAGGGTGACCAGAAGGTTCCTGTGGACATCACGTTTGCGTTGCGTGATGGACGGGGCTACCtgttagggtcagaggtcagcgGTCACCTGAGACACCTAAGCACGGTGGAGTTCAGCTTCTACCTGGGCTTCCCCGCGTTGCAGATTGCTGAAcCCTTCCACTACCCCGAACTGAACGTTTCTCACCATCTACGCTCCTCCTGGGTCCGCACAGTGTTACTGGGTGTCCAGGAGCAGACGGTGACTGAGCGGAGCTTCAAGGCTCGTCTGGAGCGCCGTCTGGCCCTGCTGCTGGAGGAGGGGCTGGGGGAGGGGCTGGGGGACGGGAGTCAACGGCGCCGCTGGAAGAGATCCACGGCCGTGGGTAACAACAGCTTACAGGTGGTGCGTGTGTCGAGACTGGCAGGTTCAGGGCGTTCTCTGGAAGTGGTGTATTTTGTGGAGGGACCAGGGGGGGAGAGAGTTCCTGCTGATGCCACCGCTGCCACCCTCAACCGCCTGGAGCTGCAACGGGCTGCCATCGTACTGGGGCACCGCGTCCAGAGACCCCTTGCCCAGCCTGTGGAGACGCTGACAGTGCCCCCGTCTGAGACTCCGAGCAGCAGTGTCTGGCTGATTGTGGGGGTGGTGGTGCCTGTCCTGCTGGctatcgtcatcatcatcatcctctacTGGAAACTGTGCGGCTCGGAGAAGCTGGAGTTCCAGCCTGACGCCATCAACACCATCCAGCAGAGACAGAAGctgcagGCTCCCAGTGTGAAAGGGTTTGACTTCGCCAAGCTCCACCTGGGGCAGCACAGTAAGGATGACATCATGGTGATCCAGGAGCCTGGTGCCCTCCCTATGCCCATCAAAGAGGCCACCCCCTCTGAGGGAGGGGATGTCAACACTCCCAAATCCAAGGGCTCCTCCACCAAGGCTGCCCGCGCTAACCGCCGTAGGGGGAGACTGTCCCCGTCAGATGGTGACTCGTTAGGTAGCGACCAAtcgagtggcagagagtctgcaGAGGAGACCACCAGACATGTGGCCACGCCCCACGAGGGGAAACAGCACCGAAACAAAACGCCCAAGAATGGGAGGAATAAGATGAtccctcccacAGGCAGTGGTCCAGATGAgctgctctcctcttcctccatcttcgACCACGTGGACCGTCTGTCCCGAGGCTCTTCTGACGGCAGGGGTCGCCAGGCCAACAAGGTCCAGTTGATTGCCATGCAGCCCCGGCCCAGCCCACCACAACGCTCACACAGCCCCACCCTCACAGAGAGGGTCAGCGCAGAggtGGCTCTGAGACATAAGTCAGAGATCGAGCACCACAGGAACAAGCTGCGTCAGCGGGCTAAGAGACGGGGCCAGTGTGAGTTCCCCTCTATGGATGACATCCTGGATGCCTTCGGGCAGGCGCAGGAGGAGGCGGGGCAGGGAGGGTGTCCCCAGCGCCTCTACAACTCAGCCCATGACCACATGGACAGCATCCTGCACACCGACCCCCCCTCGCCCCCCACCCCAGGGGAATCCAGGAAGAGGGGGAGGCGCTCTCCTCGGGGCCGGCGGAGGCAGCAGGGGAACGGCAGTCtgccagacacagacagactgacggaCAGAGACCGCCTGCTCACAGACCACAGCGCCACCTACAGGAAATACCCTGGACTCAACAATGTGGCCTACATGtcggACCCGGATCTACCTCCAGACCACGGCAGCCCCTCCCCTAACGATGAGGTGTTTGACCACGCCCCTCCCCCGCCGCCCTACGTGCCCCCCCAGCCATCCATCGAGGAGGCGCGGCAACAGATGCACTCCCTATTGGACGATGCCTTCGCCCTGGTGTCACCCTCCTCCCAGGGCAGCGTCAGTGTCGGGGTCACGCAGGTCAGCCCCGCCCTGCcgagcccctctccctccccacagaCACGCCCATCACGCCAGTGGGGCTCCTACCCCGCAGCCCCCACACACAGCCCCTTCTCTGCGAGGTATGCAGAGTTGGGGATGTCTCCCTCGTCAGTACAAGGCCTGTTGCAGAGgcagGGCCTGGGTTCGGGGGCCTATGTTACTGCAGAGGAGCAGCTGCAAGAGTCTGTCTATGCCAACAGGGGGCAGTATGAagagcctccctcctcctccagacCTCGGCCTGTTGGGGGGAGCACAGGTGCTCAGCTGCATCACCTGACTCAGGTGGGGTTGTCGAGCCGGATCAGTGCGTACCCTGGGGTGGGCCGCAGTGTCTCTGGGCCAACAGGCTCCAGCTGGAACCAGCagcctttagaccaggacctCTCCAGACCTGAAGCCAGCAGAGAGAGTgtgctGTCGTTCCCTGAGTTCTCCTCCCCCACTGTGTTTCAGATGCCCAGCTCCTCTCTGGGAGACCATTCTGTCCCCCCGATGCTCCTGGCCCCTCCCACTCCAGAGTTCCCCCTAGACGAGTCCTCCCCCTCAGCCCAAAGCTCCGCCTCCCTCATCAAGGCCATCAGGGAGGAGCTACGACGACTTGCCCAGAAACAGGTTGCTGTGGCCGGCACCTACTCCTAGACCAGTGTGAGCCCCTACCCCATAACTGGTCTGAACCAGTTTGAACTACTACCTAAACAAGTATGGACCGATTGGAACCACTACCCCAAACTAGTTTGAAACAGTCAGAACCACTTGCCCTAAACTGGTCTAAAGAGACTTACACTGCTATTCATAAGCTGGTCTGAACAAGACCAGTCTGCAACAGATACGATTTCCTTACAACAATAGCATCACTGTTCTTTAAAGGGTTCTTCTCTCTGTAAAGGTTCCTCATTCTACAGCACAGTGTTTCCACTGGACGGGAGGATCGAGTTTGTTTTCTTCAGAGTTCCATAGAAGTGCTTCCGTGAGAGGGGCCGTCTCTGCCCTTCCTGACCTCCTGTATGTGGTGCTAAACCTCAGCGAAATGTCTCCTGTCATTAAGTTAACCACGCATTGCCTTCAACATACATTCATCATCAGCCATGTTGGTGAGGTCTTCTCCATTCATCAGCCATATTGGTGAGGTCTTGCACTGTAGAGAGAGTTGGAGACTTGGAGTATAGTGTACTTTGCGCATGGGGGATTTGAATATATAGATGGAAAAAGTATATAAAAATGAAAATATTATATGTAAAGAGATGTAAAAAATCCCAAGTGAGCACAATATGAATTAATAAGAGTGACCAATGGAGTAttgaaattgtatttattttttattgctcTGAAAGTATACTTTTAAATCCTTTATTTTGACCAAAGACCAATACTGTTTGGGTGTTCTATGGCTGTATTCTCCCTGTGTTGGCGCTCACTTTTGCCGTGGAGCTGATCATAACGTTGTTTATCGCAGTGGAGACGTCGCTTAGCATAGTTGCTCGCCGCTCGTGTGTTCATGTGTTGCTGGTACAAAAAACGGATTATGCGTTGCAGACATAtaacgtgtgtgtatatatatataatatatagcgCTTTTCAGTAGGTGTCAAAAGACTTGACATGGGGCTAACCTATCCCATCCACCACCAATGTGACTTTCTGCGGCAGAACTCTCACAGAACAAAGGCATTTCTGTGGTGACGAATGACTGTGTCGAATTGTGATAGTGTTTCTCTTGGTGGGAAGAGCTGGAAAACCAGGCTACCTGTGAAATTTAAGATTGAAATGGGAATGATTTTACACCACATCGACATAAGGTAATGCAAAGGTGATTTGGGGAATTTTGATGGGATGGTTTATAGCGACTGAAAAACACCTACATGTCCAATTTCCCCCAAATAGcttcctctccttatctcctttCCTTAGTCAACTATTATCCAAATGGATGTAAAGGTGAACCTCTCGAAGAGGTGAATTTATGAAACAAAGCCATTTTGGACAAATGGACATACTATACTGTAGCAGTTGATGAGTTTGGTGGTGGTTAAGTGCTCTTTGTCTCCATCTGCTGGTGGTATGGCTGCATGGCTGGCTTCCATCTTTGCTTCAGGTTGTTTTCTCTGAGGTCTTATTGTATTGGGTTTGGTCAATGGTCAGTAATGTGTGGGTTTGTGCAGGCAAGAGAAGGCTTGCCCATCCAGCTCTGTGCTCTAGCTATCTACAGCATGTTGACTATGTTTGAggcttggctagctagctattagtGATGTGACTGTTGCTGTTGTCTTCTCTCAGGCATTCTGCTAAAATCAAtacaaaaaaatgtttaaaacagAAGTTAAACTGAAGAGTTGTAACACACAACTAAAGAGTGAGGAGTGTTATACAGTGCCATCCGAACCTGATCCATCCAAGCACATAATACATCATGATAATCAAGCAGTAGAAAAGATGCACTATGTAAGTGTCATTCTGTTATACTCTTGTTTTGCCTTTTCTAATCATTTTTTAAAACCTACATGAAAATTGATATAACAATAAATGcagtatataaaataaatataagcGTAAAATAAGTCAAACTATTTCATCTGTGATTGCTCAATTATATGGACAACCTTTCAACGGAAGGACTAACACACCTTCCCTGTGGACCAATCCTGATTCATAACTCTTCATCTGCTGGGACTTATAAACCTTCCTGATTGGACCTGGCACCTGTCAATAAGGCTGTGGGACTATACACAGAGTGGAGTCACATAGATGTGTGTGTGCGGACGACAAACCGATTCACCTGGTGCTACTAAGTAACTTACAGTAACAGACCCTTCACTCCCTCTGTACAGGGGGTTGGAGTGTGTTGATGTCTCCTCAGTCTAACAGCATCTCACACACAGCCTATACCGACATGgggagcacagacacacactgccaacatggaaaacacacacactcagaatttGATATTCCTGTCTAAAAAGATAGGATTCACTTCAAACTCTGGACTTCAAACTCTGCAGCACCTCCTGAATGTTTCACAGTTCTGTGTTTTATAGATCTGTGATTCTCTGAGACACCAGAGTGTCGGAGCAGGCTTGTTATTGACCCTAATGCCCTGAGATCATACCCCTATACTCTCTCTGTCCCCAGAGGGTATGTGTTTTGTCTACTCTTGAGACTGGGGCGGGCCCATCTATAGGCCACACCCTGGGGCGTATCTTCGACAGTGTAGTAGATGCTCAGGTGTGTTAAATGTCAGACAAGGGTGGGGTTCCTGCCCGACTAGATTCACAGACGTTGATGCAACGACTGCTCAGTGGGGCATCAAATTTCTATATCACATGTTGTGGTTAACTGACATGTTATACACCTATCCAGCTGTTGTGAGGTCTGGCATGTGTCTGCAATGTTGTCGGGCAGGAACACCACCAATACCTGTTTTCCAGTTCTCTCTCGCCTtcccactcttcatacccctcgctctctcccctcctttcccttctctctctctatccctctctttctcctctctcctccctctgagcTGCATCTCTGTGGTGTATAGAGTCTGAATGATGTGTAAATCAAACATTAAAGAAATTATGTGTTTAAAGTCA

Function

NR:

description
UPF0606 protein KIAA1549-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577509.2 True 6617 mRNA 0.53 20 32168800 32180603

Neighbor

gene id symbol gene type direction distance location
LOC110500252 LOC106609149 coding upstream 6344 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 coding upstream 23914 32114413 ~ 32144886 (+)
LOC110500249 timp3 coding upstream 274256 31873548 ~ 31894544 (+)
LOC110500247 LOC106609254 coding upstream 368679 31745773 ~ 31800121 (+)
LOC110500244 LOC106609251 coding upstream 431969 31685407 ~ 31736831 (+)
LOC110501065 LOC106609145 coding downstream 8939 32189542 ~ 32217794 (+)
LOC110500255 LOC106609093 coding downstream 50545 32231148 ~ 32234741 (+)
arf4 LOC106609140 coding downstream 70019 32250622 ~ 32254298 (+)
vatf LOC106609141 coding downstream 76877 32257480 ~ 32261475 (+)
LOC110500258 LOC106609138 coding downstream 129440 32310043 ~ 32343558 (+)
G1727480 NA non-coding upstream 490069 31678478 ~ 31678731 (+)
G1727468 NA non-coding upstream 510210 31658355 ~ 31658590 (+)
G1727427 NA non-coding upstream 567664 31600791 ~ 31601136 (+)
G1727224 NA non-coding upstream 600639 31567955 ~ 31568161 (+)
G1728051 NA non-coding downstream 16916 32197519 ~ 32220621 (+)
G1728052 LOC106609139 non-coding downstream 55718 32236321 ~ 32239087 (+)
G1728064 NA non-coding downstream 59373 32239976 ~ 32240175 (+)
G1728054 LOC106609139 non-coding downstream 60833 32241436 ~ 32243283 (+)
G1728065 NA non-coding downstream 63409 32244012 ~ 32244301 (+)
G1727220 NA other upstream 604206 31564135 ~ 31564594 (+)
G1727181 NA other upstream 660428 31508056 ~ 31508372 (+)
G1727146 NA other upstream 718683 31449396 ~ 31450117 (+)
G1729465 NA other downstream 1140850 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1529489 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3258686 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3860728 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 4052519 36189389 ~ 36237829 (+)

Expression


Co-expression Network