LOC110500255 (LOC106609093)


Basic Information

Item Value
gene id LOC110500255
gene name LOC106609093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32231148 ~ 32234741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038579.1
GGTCCTCTGCTGTGGTCTGACTGAACAACTGGTCCAGGGACAGTTTGGTTGCTTACTTTTTAGGGTTATGGTTGGTTCTTTGGTAGGGACCGCTAATCTGAAATCAGTGACTGGAGTGGAATATTCATGTCAGCCACCACTAAACTTCTGTCATTGCAATAACTTATTatctaacctctccccctttccctttctcccttAGCGAGCGCTGGCCCATTTCTATGGCTATGTCTACTTCAGACAAGTCGAGGATGCCTCCGTCAAGAGGCTACTTTCAGAAGTCTCTTGTACTGGTGTCCAGACTACCGTATGCCCACCTCTTTCAGTCCCTGCTGCAGATCATAGCTCCAGAGTATTTTGAGAAGTTGGAACCTTGCCTTGAAGCAGTGTGCAACGAGATTGACCAATGGCAATCTCCGGTGCCAGGGCTGACACTCAACCTACCTGTGATGGGCGTGGTCATGCAGGTCAGGATCCCATCCAAAAATGACAAACCAGGGGGGAGCCCGGTGAAACAAGCACAAAAGGAGGTGTTTCCAGTCCTTCCTGATCCACCTGCAGATCCTCTGGGAGCTCATGCTGATCGGGGAGGCCATGGTCATCCTGGcaccctctcccactgtctcctcGGAAACCGTGCTGGCCCTAGCGAGCTCGATTGCTCCACTGCAGTATTGCTGTGATTACAGGCAGGCCCTACTTCACCATACACGACACTGAGTTTAAGGAGTATACCACTACGATCCCAATGTGATTCTGGGGGTCACTAATCCCTTCTTTATAAAGACCTTCCAGTCCTGGCCCCACATTATACACCTTGGAGAACTCAAGATGTCAGGTGACCTGCCTGTGAAGGTGAAGAAACTAGCCAAGCTGAAAACACTGGACACTAAGTCAGGTATCTACACAGCACATAAAATGTTCCTTCAAAAAGAGAAGTCTCTCATCAAAAGAATCCTTAAAGGGATCCAGAGGAAGAGGCCATCTGAGGTGCAGAGTGCCATCTTGAGGAGACATCTGTTAGAACTCACCCAGAGCTTCATCATCCCACTGTTGAGGGGACTGCCTTCCTTACCACACATCCATCccacccctatatagactgtctGTCCTGCTGCACGCTGTGTGTCTCACCTGTCTCCCCCAGGAACACTACCTGGTCAGCCCGATGCCTCTGCTAGAGGTCTGTGACTCCTTGGAAGATCCGGAGTTCATGGGGACTCTGGAGTACGCTGGACCTCGGCTCACCTCTGTGCAGAAAGGGGATTGGGTGGGTCTGTCCACCTGCCACCTCATCTGTCATTTCTAACTATTGTATCTAGTTGTGGCACATATTTTTCAAACAAATCATCCATAATGCATTGCACTTCGATGTATGGCCTAGTAGGAAATTCTTCAGGTCCCCCAACTTCGATGGCTGGTATCGCCTGCGACACGGAGATGGCCCAGAAACCAGAATGTCTCCACCTAGAAGTCGTCTGTGATGCTGACCTGCTGGGTTGGACCAAAGGCAAGTCAGAGGTGGAGCTCGTGGATCTGGTCCTGAAGCTGAGAGGGAAACTGATCAATGAAGGCTGGAAAGCAGCAGCTCCCAGTGAAGGAAGGGGCGCTGGAGAACCTAGAGGGATACCTCCAGACTATCATCAACTCTGTACCATAGGACATGCTGACTGTACTACACAGATACTGACTCTAACACTGACACACTGCTGAATAGATACAGAAACTGATGCTgaagtgttttttttgtcttttaaaaacaacctgaattTAAAGTATTGCCATCAGCCAAAACACTACACCCTCTGAGTAATATAATGTAGCAAACTAGAAGTTTAGGTGATATTAGAAACATGGCTATGGTTCATCATGACAATAATATTAGATCAAGGGGAATAGAGAGTAGTTGTAGACTTGATGAGATTATGCCTTCACTAAGTATCCTGATTGTTACTAGTGGGATTGAAGCATATACCCGTGGAGAAGGACATGTTTGAGTATAGCCTGTTTGAGTATTTAACATGCATAGTTGTTAGCGTAAAATATAACCAACATATGCgcctacattttttattttgatgAGTTTAAAACTCCTGTCATTAAACCCATAAAAGGGGTGATTTACATTTAAGTAACTACATTTTGAGGCTTTCATCACTCAGTATTTTCTATTGATCAATCTCAGTATTTTCTATTGATCAAGCACAAATAAATCACACTACATTGAAACACTGCTAAATATCCAGGTTACAAAATCTTAAGATTTTAGTTTAGGGTTGTAtgtacaaaggtatgtggacaccccttcaaattagtggcttCGGCTATTTCGgctacacccgttgctgacagtttttttttaa

Function

NR:

description
PREDICTED: protein DENND6B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038579.1 True 2363 mRNA 0.46 10 32231148 32234741

Neighbor

gene id symbol gene type direction distance location
LOC110501065 LOC106609145 coding upstream 13354 32189542 ~ 32217794 (+)
LOC110500253 LOC106609146 coding upstream 50545 32168800 ~ 32180603 (+)
LOC110500252 LOC106609149 coding upstream 68692 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 coding upstream 86262 32114413 ~ 32144886 (+)
LOC110500249 timp3 coding upstream 336604 31873548 ~ 31894544 (+)
arf4 LOC106609140 coding downstream 15881 32250622 ~ 32254298 (+)
vatf LOC106609141 coding downstream 22739 32257480 ~ 32261475 (+)
LOC110500258 LOC106609138 coding downstream 75302 32310043 ~ 32343558 (+)
LOC110500259 LOC106609137 coding downstream 130779 32365520 ~ 32395907 (+)
LOC110500261 irf5 coding downstream 175131 32409872 ~ 32420565 (+)
G1728051 NA non-coding upstream 10527 32197519 ~ 32220621 (+)
G1727480 NA non-coding upstream 552417 31678478 ~ 31678731 (+)
G1727468 NA non-coding upstream 572558 31658355 ~ 31658590 (+)
G1727427 NA non-coding upstream 630012 31600791 ~ 31601136 (+)
G1728052 LOC106609139 non-coding downstream 1580 32236321 ~ 32239087 (+)
G1728064 NA non-coding downstream 5235 32239976 ~ 32240175 (+)
G1728054 LOC106609139 non-coding downstream 6695 32241436 ~ 32243283 (+)
G1728065 NA non-coding downstream 9271 32244012 ~ 32244301 (+)
G1728066 NA non-coding downstream 10256 32244997 ~ 32245365 (+)
G1727220 NA other upstream 666554 31564135 ~ 31564594 (+)
G1727181 NA other upstream 722776 31508056 ~ 31508372 (+)
G1727146 NA other upstream 781031 31449396 ~ 31450117 (+)
G1729465 NA other downstream 1086712 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1475351 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3204548 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3806590 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3998381 36189389 ~ 36237829 (+)

Expression


Co-expression Network