LOC110500261 (irf5)


Basic Information

Item Value
gene id LOC110500261
gene name irf5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32409872 ~ 32420565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577522.2
ATACATCTTACAACCACTAGGCTAGTACTAGGAGCCTGTCGAAAATGAAACAATGTTTTTCATATACTTCTGCCTACTTTAGAGCGCTGTCTATCAACCGGCAGGGTGGCACCAAGTTTGTTCATGTTTAACCTCAAATCATGGTTGGCCACtgtttatggaaagttttctgaATAATTATTGGACTATCTGACTGTCATTTTCCCACACAGTCATTGAACTTGTGACGGTGTTGGGCAAGGTTTTTGTCAGTTCGCCTACCTAGTAAAAAGCTTAACCTGTGGCAGCGCGCATactctctgcctggccggtttctGTTTGTGGAAGGAGGGATCCCTACAGTCAGCGTACTAGAACTCTTCGATACAAGGGAGCGAAATCATTTTGTGGAGAAGACCCATCGTTAAAAGCCTCTTCACTCACCCCATCTGAATCCCATTTCTCCTCCCTGTGTGGTGCTCTGCCCCATGATGAGTGCGCAGCCTCGGAGGATCCGCCTAAAGCCCTGGCTGTTAGCCCAGGTGAACAGCGGGAGGTACCCCGGCCTGCAGTGGCTCAGCCCGGACCACCGGATCTTCCAGATCCCCTGGAGGCACGCCACAAGACACCTGCCCACCTCTGAGGAAGAGAACACCATCTTCAAGgCCTGGGCTCTGGAGACGGGGAAGTACCAGGAGGGTCTGGATGAGCCTGACCCTGCCAAGTGGAAGGCCAACCTGCGCTGTGCCCTCAACAAGAGCCGGGAGTTCAAACTGAAATACGACGGCACCAAGGAGACACCTGTCCAGCCCTACAAGATCTATGAGGTCTGTGACCAGCCCTGCAATGGAGACACAGTtgatgaagatgaggaggagATGCCGAATATTGTTGGTCTCTCCATTGaCCCCAGAATTAGTGACCCACACAGTTTTCAGACATTCCCTACTGCACATAGGATAGACTTTCCCTTCAGCTCCGCTCTCAATGACAAATATGGCACCCCCCACCACACCCCTATGTACTCCAATCCCAACGGGAGCATTACCATGGCAGCGCATCTCCCTCAGCCAACCATGGCTCCCCCGGAGTTTTCTGCCGACGTTCCATTGGTGGTGAAGTTGGAACATGGGGTCTTTGTGCACCCTGGACCGGTAGGACCCTCCAACAGCCtggggatgggtggagggagcATGCAGCCTCCTGTGGTCACCGAGATGTCCCCCATGGTTCCTTCTGCTGCATCTGTGGCTCCGGTTGCCCCTAACCCAGGTGCCGACCCCATGGAGGCCATGTCAGGAGTCCAGAACCAGGAAGAAGAGCAGGCGGTGCCACCCTACAAATATGACCTGCTGAACAGCCTGCCATTGACTGACCTAGACATGAAGTTCCAGTACCGGGGTCGCAAGATGGGCTCCCTGACGAACGAGAAGCAGCGGTTCTACACAGAGCACCTGCTGGATGTGATGGACCGAGGCCTGATCCTGGAGATCTGGGAGCAGGATATATACGCTATCAGGTTGTGTCAGTGCAAGGTGTATTGGTCTGGGCCGGGCGTTGACGAGCAGGGGCCACCCAACcctatggagagggagaggaagtacAAAGTGTTCAGCCTCAATAACTTCCTGCACGGGCTCATCTTGTTCCAGAAGGGTGAAACTCCCACCCCACCACCGTTTGAGCTCTACTTCTGCTTTGGGGAGGACTGGCCAGACCAACGGAAACCCAAGGAGAAGAAGCTCATCGTTGTGCAGGTGGTCCCCGTGGTGGCGCGGATCCTAACAGAGATGTTTTCTGGAGACCTGTCCTGGTCCACAGACAGCATCCGGCTGCAGATCTCCAACCCAGACCTGAAGGATCAGACGGTGGAACAGTTCAAGGAACTCCAGAGGCTTCTCCAGAGTCAGCATGGCCTGGGACCCTGAGTCAGGGGCCTCTTTCTGGGTCTTAAACAGGGCCTGCCTGTCCTGGATAAATAACCTTATTCAACTCCCATTAATGTTTTGTGTGTTGGAATTATTAGCCTTCTTTCAACTCTGAGCCTCCCTCAATATAATCTTCATCCATACCATCCAGCCTAGAGCTCTGTGTCTTAACGGGATCTTGGGTAGAACTACTTCTACATCATCAAAACCCAGACTGCTGTATCCTCATTGTGTTTAGTCTCTTAAATTATTTTTTGAATTACAATAATTACCActgcagtattttttttaatatatagtTGTGGCAGATATTACTTTTAACTGTCACTAATTTCTAGCCATTTTCCTTTCGCAACACTGTAACTGGCTCTCTCGAGAGAATTGACACTGATGCTATGAAGCCAAAAATGTGACACACACAATGTGAAAAGTATTGTAATGTTATTTTTTATGAATACATTAATCAG
>XM_021577521.2
CATCTTACAACCACTAGGCTAGTACTAGGAGCCTGTCGAAAATGAAACAATGTTTTTCATATACTTCTGCCTACTTTAGAGCGCTGTCTATCAACCGGCAGGGTGGCACCAAGTTTGTTCATGTTTAACCTCAAATCATGGTTGGCCACtgtttatggaaagttttctgaATAATTATTGGACTATCTGACTGTCATTTTCCCACACAGTCATTGAACTTGTGACGGTGTTGGGCAAGGTTTTTGTCAGTTCGCCTACCTAGTAAAAAGCTTAACCTGTGGCAGCGCGCATactctctgcctggccggtttctGTTTGTGGAAGGAGGGATCCCTACAGTCAGCGTACTAGAACTCTTCGATACAAGGGAGCGAAATCATTTTGTGGAGAAGACCCATCGTTAAAAGCCTCTTCACTCACCCCATCTGAATCCCATTTCTCCTCCCTGTGTGGTGCTCTGCCCCATGATGAGTGCGCAGCCTCGGAGGATCCGCCTAAAGCCCTGGCTGTTAGCCCAGGTGAACAGCGGGAGGTACCCCGGCCTGCAGTGGCTCAGCCCGGACCACCGGATCTTCCAGATCCCCTGGAGGCACGCCACAAGACACCTGCCCACCTCTGAGGAAGAGAACACCATCTTCAAGgCCTGGGCTCTGGAGACGGGGAAGTACCAGGAGGGTCTGGATGAGCCTGACCCTGCCAAGTGGAAGGCCAACCTGCGCTGTGCCCTCAACAAGAGCCGGGAGTTCAAACTGAAATACGACGGCACCAAGGAGACACCTGTCCAGCCCTACAAGATCTATGAGGTCTGTGACCAGCCCTGCAATGGAGACACAGTtgatgaagatgaggaggagATGCCGAATATTGTTGGTCTCTCCATTGaCCCCAGAATTAGTGACCCACACAGTTTTCAGACATTCCCTACTGCACATAGGATAGACTTTCCCTTCAGCTCCGCTCTCAATGACAAATATGGCACCCCCCACCACACCCCTATGTACTCCAATCCCAACGGGAGCATTACCATGGCAGCGCATCTCCCTCAGCCAACCATGGCTCCCCCGGAGTTTTCTGCCGACGTTCCATTGGTGGTGAAGTTGGAACATGGGGTCTTTGTGCACCCTGGACCGGTAGGACCCTCCAACAGCCtggggatgggtggagggagcATGCAGCCTCCTGTGGTCACCGAGATGTCCCCCATGGTTCCTTCTGCTGCATCTGTGGCTCCGGTTGCCCCTAACCCAGGTGCCGACCCCATGGAGGCCATGTCAGGAGTCCAGAACCAGGAAGAAGAGCAGGCGGTGCCACCCTACAAATATGACCTGCTGAACAGCCTGCCATTGACTGACCTAGACATGAAGTTCCAGTACCGGGGTCGCAAGATGGGCTCCCTGACGGTGAGTAACCACCAAGGCTGCCGGCTGTACTACGGCCACCTGGAGCCCACCCCGGAGCAGGTGGACCTGTTCGGCCCTGTCACCCTCAACCAAGTTCTCTTCCCTGGCTCGGCCGACATCCAGAACGAGAAGCAGCGGTTCTACACAGAGCACCTGCTGGATGTGATGGACCGAGGCCTGATCCTGGAGATCTGGGAGCAGGATATATACGCTATCAGGTTGTGTCAGTGCAAGGTGTATTGGTCTGGGCCGGGCGTTGACGAGCAGGGGCCACCCAACcctatggagagggagaggaagtacAAAGTGTTCAGCCTCAATAACTTCCTGCACGGGCTCATCTTGTTCCAGAAGGGTGAAACTCCCACCCCACCACCGTTTGAGCTCTACTTCTGCTTTGGGGAGGACTGGCCAGACCAACGGAAACCCAAGGAGAAGAAGCTCATCGTTGTGCAGGTGGTCCCCGTGGTGGCGCGGATCCTAACAGAGATGTTTTCTGGAGACCTGTCCTGGTCCACAGACAGCATCCGGCTGCAGATCTCCAACCCAGACCTGAAGGATCAGACGGTGGAACAGTTCAAGGAACTCCAGAGGCTTCTCCAGAGTCAGCATGGCCTGGGACCCTGAGTCAGGGGCCTCTTTCTGGGTCTTAAACAGGGCCTGCCTGTCCTGGATAAATAACCTTATTCAACTCCCATTAATGTTTTGTGTGTTGGAATTATTAGCCTTCTTTCAACTCTGAGCCTCCCTCAATATAATCTTCATCCATACCATCCAGCCTAGAGCTCTGTGTCTTAACGGGATCTTGGGTAGAACTACTTCTACATCATCAAAACCCAGACTGCTGTATCCTCATTGTGTTTAGTCTCTTAAATTATTTTTTGAATTACAATAATTACCActgcagtattttttttaatatatagtTGTGGCAGATATTACTTTTAACTGTCACTAATTTCTAGCCATTTTCCTTTCGCAACACTGTAACTGGCTCTCTCGAGAGAATTGACACTGATGCTATGAAGCCAAAAATGTGACACACACAATGTGAAAAGTATTGTAATGTTATTTTTTATGAATACATTAATCAG

Function

symbol description
irf5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cytokine-mediated signaling pathway; defense response to virus; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; immune system; liver; and muscle. Human ortholog(s) of this gene implicated in herpes simplex; inflammatory bowel disease 14; multiple sclerosis; rheumatoid arthritis; and systemic lupus erythematosus. Orthologous to human IRF5 (interferon regulatory factor 5).

NR:

description
interferon regulatory factor 5-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09446 IRF5; interferon regulatory factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577522.2 False 2374 mRNA 0.51 10 32409872 32420565
XM_021577521.2 True 2494 mRNA 0.52 9 32409875 32420565

Neighbor

gene id symbol gene type direction distance location
LOC110500259 LOC106609137 coding upstream 13965 32365520 ~ 32395907 (+)
LOC110500258 LOC106609138 coding upstream 66314 32310043 ~ 32343558 (+)
vatf LOC106609141 coding upstream 148397 32257480 ~ 32261475 (+)
arf4 LOC106609140 coding upstream 155574 32250622 ~ 32254298 (+)
LOC110500255 LOC106609093 coding upstream 175131 32231148 ~ 32234741 (+)
LOC100135983 opn1sw coding downstream 35556 32456121 ~ 32458130 (+)
LOC110500263 LOC106609128 coding downstream 53416 32473981 ~ 32494341 (+)
LOC110500266 LOC106609126 coding downstream 102207 32522772 ~ 32531043 (+)
LOC110500265 NA coding downstream 110631 32531196 ~ 32553744 (+)
LOC110500267 LOC106576021 coding downstream 139985 32560550 ~ 32568416 (+)
G1728132 NA non-coding upstream 53311 32354036 ~ 32356561 (+)
G1728131 NA non-coding upstream 56962 32352626 ~ 32352910 (+)
G1728115 NA non-coding upstream 80310 32329294 ~ 32329562 (+)
G1728114 NA non-coding upstream 80876 32328782 ~ 32328996 (+)
G1728112 NA non-coding upstream 83583 32326034 ~ 32326289 (+)
G1728188 LOC106609130 non-coding downstream 37727 32458292 ~ 32462718 (+)
G1728191 NA non-coding downstream 44637 32465202 ~ 32468500 (+)
G1728170 NA non-coding downstream 74045 32494610 ~ 32495559 (+)
G1728252 NA non-coding downstream 224229 32644794 ~ 32645016 (+)
G1728259 NA non-coding downstream 234824 32655389 ~ 32655594 (+)
LOC110500252 LOC106609149 other upstream 247480 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 273176 32114413 ~ 32144886 (+)
G1727220 NA other upstream 845278 31564135 ~ 31564594 (+)
G1727181 NA other upstream 901500 31508056 ~ 31508372 (+)
G1727146 NA other upstream 959755 31449396 ~ 31450117 (+)
G1729465 NA other downstream 900888 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1289527 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3018724 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3620766 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3812557 36189389 ~ 36237829 (+)

Expression


Co-expression Network