LOC100135983 (opn1sw)


Basic Information

Item Value
gene id LOC100135983
gene name opn1sw
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32456121 ~ 32458130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124321.1
ATCTAAGGAACGGACGGGTAGGGGTACTGAGTCAGAGAGGAGCCAAGATGGGAAAGAACTTCCATCTGTACGAGAACATCTCTAAGGTCAGCCCATTTGAGGGGCCACAGTATCACCTGGCCCCAATATGGGCTTTCTACCTACAGGCTGCTTTCATGGGCTTTGTGTTCTTTGCTGGAACACCCCTAAACTTTATCATTCTCGTGGTGACAGTGAAGTACAAGAAGCTGAGACAACCGCTAAACTACATCCTGGTCAATGTCTCGTTAGCAGGTTTTATCTTTGTGACTTTCTCTGTGAGTCAAGTGTTCGTTTCTAGTGCGAGAGGATACTACTTCCTGGGTTACACCTTGTGTGCAATGGAAGCTTGCATGGGTTCAATAGCAGGGTTGGTGTCAGCTTGGTCTCTGGCTGTCCTTGCCTTTGAGAGATACGTGGTCATCTGCAAACCCTTCGGCACCTTCAAATTTGACAACAACCAGGCTCTGGCGGCTGTTGCCTTCACCTGGGTCATGGGGATCGGATGTGCAACCCCACCATTCTTCGGCTGGAGCAGGTATATCCCTGAGGGTCTGGGCTGCTCCTGTGGACCTGACTGGTATACAAACAATGAGGAGTACCACTGTGCCAGCTACACCAAATTCCTCATTGTTACCTGTTTCCTCATGCCCATGTCCATCATCTTTTTCTCCTACTCCCAACTACTGGGAGCACTACGGGCTgtggcagCTGCACAGGCTGAGTCAGCTTCCACCCAGAAGGCAGAAAAGGAAGTATCCAGGATGGTGATTGTGATGGTGTGCTCCTTCATTCTGTGTTACGGCCCCTACGCCTTGGCAGGCTTGTACTTCGCCTATACAACAAGCGAGAACAAAGACTACCGCCTGGTCACCATCCCTGCTTTCTTCTCTAAAAGCTCCTGTGTATACAACCCTCTCATTTACGCCTTCATGAACAAACAGtTCAACGCCTGCATCATGGAGACAGTGTTTGGAAAGCAGATTGAGGAGACTTCAGTTTCAGCCTCCAAGACAGAGGTCTCCACAGCCTAATCTTTGACTCTGGTCTCAGTCCATCAGGAGCCCATCCCCAACAGCCAACAGTCTTGGGGTGGATTCAATAAACCATCTAAGGTTCCCTAACACTTGATTGAAATTGTGAGTTCAGGGGAAATAGGGTTAATTGAATCTACTCCTTTATGAAATACTCATGTCAAATTATTGTAAGATATCAGGTAAATAAAGATTTATATTGTATTACGATGCACTTTTAAAAA

Function

symbol description
opn1sw Predicted to enable G protein-coupled photoreceptor activity. Involved in cellular response to UV-A. Located in perinuclear region of cytoplasm and plasma membrane. Implicated in blue color blindness.

NR:

description
putative violet-sensitive opsin

GO: NA

KEGG:

id description
K04252 OPN1SW; short wavelength-sensitive opsin

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124321.1 True 1276 mRNA 0.47 5 32456121 32458130

Neighbor

gene id symbol gene type direction distance location
LOC110500261 irf5 coding upstream 35556 32409872 ~ 32420565 (+)
LOC110500259 LOC106609137 coding upstream 60214 32365520 ~ 32395907 (+)
LOC110500258 LOC106609138 coding upstream 112563 32310043 ~ 32343558 (+)
vatf LOC106609141 coding upstream 194646 32257480 ~ 32261475 (+)
arf4 LOC106609140 coding upstream 201823 32250622 ~ 32254298 (+)
LOC110500263 LOC106609128 coding downstream 15851 32473981 ~ 32494341 (+)
LOC110500266 LOC106609126 coding downstream 64642 32522772 ~ 32531043 (+)
LOC110500265 NA coding downstream 73066 32531196 ~ 32553744 (+)
LOC110500267 LOC106576021 coding downstream 102420 32560550 ~ 32568416 (+)
LOC118943022 NA coding downstream 106582 32564712 ~ 32564944 (+)
G1728132 NA non-coding upstream 99560 32354036 ~ 32356561 (+)
G1728131 NA non-coding upstream 103211 32352626 ~ 32352910 (+)
G1728115 NA non-coding upstream 126559 32329294 ~ 32329562 (+)
G1728114 NA non-coding upstream 127125 32328782 ~ 32328996 (+)
G1728112 NA non-coding upstream 129832 32326034 ~ 32326289 (+)
G1728188 LOC106609130 non-coding downstream 162 32458292 ~ 32462718 (+)
G1728191 NA non-coding downstream 7072 32465202 ~ 32468500 (+)
G1728170 NA non-coding downstream 36480 32494610 ~ 32495559 (+)
G1728252 NA non-coding downstream 186664 32644794 ~ 32645016 (+)
G1728259 NA non-coding downstream 197259 32655389 ~ 32655594 (+)
LOC110500252 LOC106609149 other upstream 293729 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 319425 32114413 ~ 32144886 (+)
G1727220 NA other upstream 891527 31564135 ~ 31564594 (+)
G1727181 NA other upstream 947749 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1006004 31449396 ~ 31450117 (+)
G1729465 NA other downstream 863323 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1251962 33709461 ~ 33869016 (+)
G1732028 NA other downstream 2981159 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3583201 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3774992 36189389 ~ 36237829 (+)

Expression


Co-expression Network