LOC110500270 (LOC106566433)


Basic Information

Item Value
gene id LOC110500270
gene name LOC106566433
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32594388 ~ 32602892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110500270
TTTGGGCGCTGGCTGATCGAGGGCAGTCCCTATGTGGTCCTATTTGACACGGGGTCAGCAGCCTGGAACCTGGACCGATGGAAGGGGGATCTGTGGGACACCTGGGGTTATCGGTATGCCCGCCCATGACAGTGAGGCAAACGTTTTTGGATCCATGGTTGCCTGGTTCTTTAAGAGTTAACCGACCAGCTTGGAGACTCGCCCAATGTCCTCGACCATTTCCACGAGTGACAGGCAGGGGGAGGACTTATTCTCTGTCGCTTGCGGAAGATTCCCTTGGCAACCATCTTCACAACCCATGCCACTCTGTTGGGACAATACCTCTGTGCCGGAAATGTGGACTTCTACAACAAATTGGACAAGCTCAACATAGacgaggaggctggtgaggggcaGGTCTACCATCGCTACTGTCTGGAGAGAGCTGCTGTCCACAGATATGGTGATGCCGAACGGATTGAACATCAAGAAGTTCTCAGCCATGCACGAGTTCCCAGAACTTTCACTCCACCAACCAGGGTCCGATTCAGGAATATATCAGGGGACACTTCTATGGGTGCACAAGAATGACGTCACAGTGGTGGTTTTCTTCATCATGCCAGCCAAGACCAACAACTTTAACGTGGAGATGCTGAAGGGACAGGCGGTATGCAAACAGCTCTGGGACACTGTGAAAGATACTGTACGTTTGGCAAGAGGCTTTACGAGGCTTTGTTAAAAGGAGACATCCCTGTATTGGACACCATCCTGGACCGAGACGACTTCACCGTCACGAAGAGAGCCATCTCTGCCACACAGagacACACCCTTCCTCCAGTGACCACTCACAGCGTGCGGGATGACACCTCTGACCCCATCCTGGCCAACGTGAGACGCATCGGCCTCCTCAGCGCTCGCACTGACCGAGTCAAGGTCTGCAGGATGTTCGTTCGATGTCCGTGTTTGTTTTATGATAATGTTTTGCCTCGTTTATTGTGTTAAACCAGTTGAAGAATTGTCTGGAGAAGGTCTGGCAGCCGAGACATTGACAATATAGAAAGTATCATAAAGGCTCATGCGTGCTTATGATAAGCAATACCTGTTGCTTTTATGTAAGGTACTatcaaagtgtttttttttcttccattagagcagtggttcccaaactgttggTCGGGATGACATTGGTATGGAAAAACGCTTTCATTGTAAACTTAAAAGACTAAAATCAAATAGAAAGTATGTGGAAAAGATAATTGACTTACACATTTTTCTAAAATAACTTATAATTGTTGAGAATTTACAATCAATTAAATAAAAGCTAGACAATTAGGCCCCCATTGActttgttataatgtttgagcATTGAACAAACCATTAGCCATGGCAAACTGtatagaatttcaggaaattggctttaaaacggcaacattttctttTAGCTCCATGGCAGGGTGTGTGGAATTGCAAGAGATCAGCTTTGAAATTTCCTCTCCGCTGCCACGAGAATATGTTTGACTTATTCTTTAGTCTGTGTATGTCTTTTCACCGCACAACACTTATGGTGGGTTGCAGCTCAAAAGACTGTTCAATTGGTGGGTCACGAACCAAAAAGTTAGGGAACCCCTGCATTAGAGTATAcagtatatgccatttagcagacacttttatccttagttacttacagtcatgcgtgcatagaTTTGACATATGTTTGGTCCTGGaaatcgaacccactatcctaGTGTTGCCagcgccatgctctactaactgagctacagaggaccctTGGAGCATACAGTATAGCCAGTGTAGTGTTGATCTATATTTTATTCTAAATGGTACTAACAGACATGTTTCCTGATAGTATCAGATAGTGTTCCACCCAGAGTTCCTGTCCCCCACCAGTCTCCAGCTTCCTATGGACAATGGGGAGTTTGTATGAGGCTGTCGCCTGGGGGTCTTCCCTTCTTACTACGAGCTCTGGGGATACACACCAGGTGACCTGTCACACTTACACAGCCTGCAAACATAAACTCCATCACTTTGGTTTTCTCTGGCTAATGTTTAtgtctgtgtttttgtgtatTCCTTCATGTGTGTGGAGTGTTGTATGATGTGTGGGTGCACTATTATGttgtagttgttattgttccCCAGCTGAGCGTACTGTGATGGGGGATACCCAGTGTGACCACCAACCTGTCTGGCTTCGGCTGCTTTTTGGAGGAACATGCGTGCACTCTAACCCCCACCACAgtgatgaggaggatgatgatgaagagcCATATGATGAAGATGAGGAGGCAGAGCGGGACAGGTAGAACATCAAAGCCCCCTTCACTCTGGGTGTCACCCCCGAGGGCAAGAAGACA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110500270 True 2354 mRNA 0.47 8 32594388 32602892

Neighbor

gene id symbol gene type direction distance location
LOC110500268 LOC106609123 coding upstream 8725 32570744 ~ 32585663 (+)
LOC110500267 LOC106576021 coding upstream 25972 32560550 ~ 32568416 (+)
LOC118943022 NA coding upstream 29444 32564712 ~ 32564944 (+)
LOC110500265 NA coding upstream 40644 32531196 ~ 32553744 (+)
LOC110500266 LOC106609126 coding upstream 63345 32522772 ~ 32531043 (+)
LOC110500271 LOC106576017 coding downstream 10275 32613167 ~ 32636236 (+)
LOC110500277 LOC106609118 coding downstream 91325 32694217 ~ 32756092 (+)
LOC110500276 LOC106609116 coding downstream 165103 32767995 ~ 32792331 (+)
LOC110500278 LOC106609115 coding downstream 190318 32793210 ~ 32834958 (+)
LOC110500279 LOC106609114 coding downstream 238897 32841789 ~ 32957803 (+)
G1728170 NA non-coding upstream 98829 32494610 ~ 32495559 (+)
G1728191 NA non-coding upstream 125888 32465202 ~ 32468500 (+)
G1728188 LOC106609130 non-coding upstream 131670 32458292 ~ 32462718 (+)
G1728132 NA non-coding upstream 237827 32354036 ~ 32356561 (+)
G1728131 NA non-coding upstream 241478 32352626 ~ 32352910 (+)
G1728252 NA non-coding downstream 41902 32644794 ~ 32645016 (+)
G1728259 NA non-coding downstream 52497 32655389 ~ 32655594 (+)
G1728260 NA non-coding downstream 52893 32655785 ~ 32655993 (+)
G1728265 NA non-coding downstream 59157 32662049 ~ 32662256 (+)
G1728269 NA non-coding downstream 64719 32667611 ~ 32667979 (+)
LOC110500252 LOC106609149 other upstream 431996 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 457692 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1029794 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1086016 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1144271 31449396 ~ 31450117 (+)
G1729465 NA other downstream 718561 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1107200 33709461 ~ 33869016 (+)
G1732028 NA other downstream 2836397 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3438439 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3630230 36189389 ~ 36237829 (+)

Expression


Co-expression Network