LOC110500277 (LOC106609118)


Basic Information

Item Value
gene id LOC110500277
gene name LOC106609118
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32694217 ~ 32756092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577567.2
CATTGTTTTATTTAAAAGATTATTCAAAGTAATACGTCATTTTGAAAGAAGCATGCTTTGAATTCGTGTCCCTCAGTCATTAGGCACGTTTTTTTGTCACACTCCCTTCTAACAAGTCCTTGTCCAGAAAGGGAAACAAAAGCCACATATGTGTTAGACTGGTAGCTTTCAGGAATGGGGTCCTAATATTTTGTAGCTTAAACCGTTCAAATGCTAGAGCCAAATGCATatgaagaaaacaaaaaaaatctatatgcCACAAAGGTGCAAGAAACCACAAAAAAACGCTAGTGCTTGTCCTTTGGGCCGCCAGTTGAATAGCCCTGCACTATAGGTTATGTGTGATGCAAGGTAATAGGTAAATCAGTCAGTAGGCAGTCACCTGCAGTAATTTTGATTCTCTGGAACACGGCCAGTGTCTACATGGCAGTTTGCAGGAAAGCAATACCTCTAcgtcagagcgagagagcgcgagagagagacagagaattaTAGAGTAACCCTCATCAGTACCACTGCAATGACACTTCTGTAGCCTGTGACCACGGCTACAGACCAACTTCTGTCAACTCGAATTATTAATAATTAACGGTTTTTGGACCATTTGCTCGACTGTGAGGACAACAAACATCTCTTAACAATTAACCAACCAATTACAGTCCTGTGAACATTTCGTGGGTGCGTTTGTTTCCCTTATGTCCCGAAAATCGAGCGACAATGACTATAATCTTCGTAGTATGAGCAACCTGATGGGTGAGAGGAGGAAGAAAGTGAACGATGACGGAGAGCGGAGCCTCATCAAAGCTTCGTCCAACGCGAGCATCAACAGCCAGGCTGCCGATGTCCCTGCCAATGCCACTGCCGCCACCTCTACCCGGGACCTGGAGAGAGAGGCGCGTAAACAGTTCCAGCAAGATGTCACACCTGCGTTTGTTTATGTTCTAGCTGCGTTCTCCGCGCTGGGTGGCTTTCTGTTCGGCTATGACACCGGGGTAATCTCGGGAGCGATGCTCCTGCTCAAGAGGGAGATGAATCTCAGCGCCCTATGGCAGGAGGTTCTGATCTCTAGTACTGTGGCTACCGCCGCGCTGTCGGCGTTGGCTGGCGGGTTGTTGAACGGAGTTTTCGGGCGCAGGGTCTGCATCCTCCTGGCTAGTTTTATCTTCACAGCTGGGGGAATAGTGCTTAGCGCAGCTCCTGATAAGGAGGTTCTACTGGTCGGACGTCTCATTGTTGGGCTTGGACTTGGTATTGCGTCCATGACGGTGCCAGTGTACATAGCCGAGACGTCTCCCCCCCACCTGAGAGGCCAGCTGGTGACAGTAAACACACTGTTTATCACAGGAGGTCAGTTCACTGCCAGCATCATAGACGGGGCCTTCAGCTACCTACGCCATGATGGAtggaggTATATGTTGGGTCTGTCGATGGTCCCTGCGGTGCTTCAGTTCGTGGGGTTTCTGTTCCTGCCAGAGAGCCCCCGCTGGCTGATCCAGAAAGGCCTTACCCAGAAGGCCCGGCGCGTGCTCAGCCAGATTAGAGGCAATCAGAACATAGACGAGGAGTACGACAGCATCAAGAACAGCatcgaggaggaggagaaagactgcggaggagatggCCCGGTGATCTGGAGGATGCTGACCTACCCCCCCACTCGGAGAGCACTCCTGGTGGGATGTGGACTGCAGATGTTCCAACAGCTCTCTGGGATCAACACTGTCATGTACTACGGCGCCACCATCCTGCAGATGTCGGGAGTGCGGGATGACAAGGTGGCCATCTGGTTGGCTGGGGTCACAGCCTTCACCAACTTTCTGTTCACCCTACTGGGGGTGTGGCTAGTGGAGAGAGTTGGCCGCAGGAAACTCACCCTGGGGAGCATCATTGGTACATGTCTGAGTCTGTCTCTGCTGGCCATTGGGTTTCTGCTGTCTGCCCAACACACCCCTCCTGTCACCCTCCACCCCACTGACCCCTCAATGGTCAACTCCACCTGCAACAGACACCTGCTGTGTGAGCCGTGTATGCTGGACCCGGGGTGTGGCTTCTGTTACCGTGAGAACAGCACAGCTCTGTTCGCCTCCTCGTGTGTACCTGTCAATACAGCCTCCACTGAGAAGGCAGCCTGGGGCAGGTGTTCCAACTCGACCCAGCTGAGAGTCCATACGTACTGGGCCTATAACTACTGTCCCACCTCCTACTCCTGGGTGGTCCTACTGGGTCTTGTTCTCTATCTGGCCTTCTTCGCCCCAGGTTTGGGTCCAATGCCGTGGACAATCAACTCTGAGATTTACCCCCTGTGGGCCCGGAGCACAGGGAACGCCTGTTCAGCTGGAGTCAACTGGACATTTAACTTCCTGGTCTCCCTCACCTTCCTCCATGTGGCTCAGAACCTCACCTACTACGGAGCGTTTTTCCTTTACTCCAGCCTGGCTCTGCTTGGGTTCTTCTTCATCTACGGCTGTCTGCCTGAAACAAAGAGCCGGAGGCTGGAGGAGATTGAGTCCCTGTTCGACAACCAGCTGTGCTCCTGCGGGGCCACAGACTCTGATGAGGACCGGCAGGTGGAGTACATCAGGGTGAAGGGGAGCAACTACCACCTCTCTGATAACGATGCCTCCGACGTGGATTAGccctagcctgagtgccagtcagTTTGTGCTTTCATGCCAACTCAATGTCATGCCAAATAATGGCTTGATGATGACAGCcatggagttggcaagagcacacaGATCTGGTCCCAGTCTAGTTTGTAACTTTGGCCTTGGATTTTGTCCCTGTTCTCTCAACTCAGAAAGTATGTATCAAGTGTTTTGGAGTAGGAGTGTTGATTTAGGATTAGTTTGGCCTTTTATCATAATTAATAATATTACATGGACAGGAAGCTTGATACATACAGCCCCTGATCTACAACCTCCCCGAGTCCTGTTCTCTGGTTTGCCTCAGTCACGTAGGTTACATTGCTCCATCTTTTTCACACACAGGGTAGCTATTTATAACACAAGTTACTTACACATTTCATTTTGCCAATGTAATGTTGTAGTTACTTCTATAGTTTGATAATAATCTTATTTTTGATTTATAAACCATCATGTAAATAGTATTAAGCATACATTACATTCAAATTTATCCTCAGCATTTAGACATCCATTTTACTGTTCATATGTCGCATTATTATGAATTTCCATATATGAGGCAGACCAACAATTAACAAAACTATTGCCTTTTCCCTCACATAAAAAACCCTATGATTAGAGATAAAACCTCTTCACAACAAAACCTTTATTGTAGGAGTCCAAACGTCCACTAAAATGGCCACGATATTACAAGTTTTAAAATCAGAGAGAGGGATTGTAATATAGTGTTGATACCAGTATGCCTTTCTATATGAAACACAACTCAGAACAATATTGTCTCAGCTTGTCTGTAGCATCACAAATGGGGTGTCAGACACTAGTAGTACACCTGGGCtttgcatcccaaacggcaccctattcctagtgcactacttttaaccagagccctatgggccttggtcaaaagtagtgcagtataaagggaatagcatgccatttgggacttaacCTGTTCTCTGTCTATAATGATGTTCAGTCTTGCTTTGCTATTTGTATTATCATGTTGGTTGATAAGCTACAGTAGCACATGACCCGTCTCTGTTTTCTCATTAGTAAACCTATGGATTATTATGTTATTTATTCTAATGTATTTTACCCATGATGTCGGTGCCTGTACTGAAGTGAAATGTATGAAGGAGTTGACTATATGGCCAGCCAGCGTGATGATAGCCTTTCAGAAGTTGCAAATGTTTTTATTAATCGATGTAGACTAGACTATTCATTGGGTTGTACCTCAGTCTCTGAGGGAATAACCATGCATTGAAATGGACAGTTTAGTCGGTTAATGTCACACACAGTTGTTCTTTGGGAAAACAATGTCAGAAAGAATGTATTATTTTGTCTTCATTTTACGTTGTCTTCCTCCACAGCCTTATGTACAAATTGCAATGCATACTCTTCACGTGAAAGAGCTGGGGTTCTCGTGTTCTAAAGGGTCGAGGAGTACTGTATTGTACTTGCTAATGTTGTTTTATATATTGTAAAACTATGTAAGGTGACACCTTTTTAGTTGAGTACTTGAGTACACATAGATTTGAGTGTAGCAGACTGGTTGAAAGTGGTCAACATAATGTCGCTGAGAATATGTCTGTGTATTATTGTCTGTGACAAAACAAGATAGATAGCTACTATTGGGAATTCAAATAGGATTTTCTCTAGACTGAAATGAAATGACAGCATTTCAAAGGATCACAGTTCATTGGAACATCAGTGTCAATACTGGATTATTGAGTATTTATTATCAATATTTGAGTATTTGATTAGAAATGTGATTAGAAAAGAGAGGATACTAGAGGTAGTCTAAACTGGAGGTTCACTGGaagatatatcttttttttttaattatcacAGTTTGTTTTATAGAGAAAAAACACTTTATTGCACACCCCCCTTCACAAAGGTGACAACATTGTCGTCATGTAACAAACTTGAGATAGTGTCAAACAAGGTATTTGATgttttgtgattttatgaaaaaTGCTCAACAACCCCTTGACAACCCATTTTGTTATTACTATATTGCCCTCTTTGCTTTAACTCCTAAATGGGGACATCCAATGTGTTTATGGTGAACGGGTGCAATtgtttgtgaaaatgtgaaaaCAAATTAAATGCAGTGTTTCTATTCTAGATTATGAAGAAGAACTagtgaatatttaaaaaaaaaatgcatccaGTGCTGTATAGTATACATTTGATTATTGTTGCTGTAAATGTTTTGCTAGAATTTATATTCTATCAAAGTAAATATATTCATGAGAATCTAGAACACTTAAATATGTATTGGGAAAAAATAAACGAATTATCTTGCAATG

Function

NR:

description
proton myo-inositol cotransporter-like

GO: NA

KEGG:

id description
K08150 SLC2A13, ITR; MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577567.2 True 4957 mRNA 0.45 10 32694217 32756092

Neighbor

gene id symbol gene type direction distance location
LOC110500271 LOC106576017 coding upstream 57981 32613167 ~ 32636236 (+)
LOC110500270 LOC106566433 coding upstream 91325 32594388 ~ 32602892 (+)
LOC110500268 LOC106609123 coding upstream 108554 32570744 ~ 32585663 (+)
LOC110500267 LOC106576021 coding upstream 125801 32560550 ~ 32568416 (+)
LOC118943022 NA coding upstream 129273 32564712 ~ 32564944 (+)
LOC110500276 LOC106609116 coding downstream 11903 32767995 ~ 32792331 (+)
LOC110500278 LOC106609115 coding downstream 37118 32793210 ~ 32834958 (+)
LOC110500279 LOC106609114 coding downstream 85697 32841789 ~ 32957803 (+)
LOC110500281 trmu coding downstream 294383 33050475 ~ 33053507 (+)
LOC110501067 LOC106609112 coding downstream 297968 33054060 ~ 33166691 (+)
G1728269 NA non-coding upstream 26238 32667611 ~ 32667979 (+)
G1728265 NA non-coding upstream 31961 32662049 ~ 32662256 (+)
G1728260 NA non-coding upstream 38224 32655785 ~ 32655993 (+)
G1728259 NA non-coding upstream 38623 32655389 ~ 32655594 (+)
G1728252 NA non-coding upstream 49201 32644794 ~ 32645016 (+)
G1728542 NA non-coding downstream 376469 33132561 ~ 33150958 (+)
LOC110500282 LOC106609111 non-coding downstream 491877 33180674 ~ 33253523 (+)
G1729333 NA non-coding downstream 508802 33264894 ~ 33265132 (+)
G1729338 NA non-coding downstream 514534 33270626 ~ 33270856 (+)
G1729344 NA non-coding downstream 519955 33276047 ~ 33276267 (+)
LOC110500252 LOC106609149 other upstream 531825 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 557521 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1129623 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1185845 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1244100 31449396 ~ 31450117 (+)
G1729465 NA other downstream 565361 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 954000 33709461 ~ 33869016 (+)
G1732028 NA other downstream 2683197 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3285239 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3477030 36189389 ~ 36237829 (+)

Expression


Co-expression Network