LOC110500276 (LOC106609116)


Basic Information

Item Value
gene id LOC110500276
gene name LOC106609116
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32767995 ~ 32792331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577566.2
GACATTAGTTTATTAAGTGTACTATACACAGATGCTGGGCAATAGTCacgatacagtatgtacagtaaaaCGTACAGTAGGACCTCATTTGAATATGTCACTCACAACCGATCGTGTCTTTCCGGGGTGTTGCCCAAATAAAACACTGCCAAACCAAATGACGGAAATACTGGAACGTAGCTAGCGGTTGAGTTTTCTAGCTGAAACATCGCACCATTGTATGAGGTAGATTGTTTTTCCATCATGATACTAACTCCCGGTGGATGTAGAACGGAATAACATCAAAGAAGACTAGCTCTTTGATCGCTTTGTAGGGGAAAGATGTCCAATATACTTGATGCGGCGTCCAGAGTGAAATGGGACCGGGCGACTGCAGCGAAGCGAGCTATCTTTCTCGCGGCCGCTGCCTATGGGTTGAAAACCCTGTACCCCATCGTCTGCAGACAATTCGTGAAACGGAAAGAATGCAAGAATAGGAGGGGGTCTAAAGGAGAAGAAAATGGCTCAACGGTGAAATCACAAACAGATGCACTGAGTCATAAAAAGTCACCTGGTGTAAACGCTGAATTTTTTAAGCAGATACTTGAACTCATTAAAATTCTCTTTCCAAAGCTTGTCTCCAAAGAGCTTGGATTGCTGTCTCTGCATTCGGTCGCGTTGATTTCCCGGACGTTTCTGTCTATCTATGTCGCAGGCTTGGATGGCAAGATTGTGAAAACAATCGTTGAAAAAGAACCACGAAGCTTCATCATCCAGCTGATGAAATGGCTCCTTATTGCTATCCCGGCCACATTCGTGAACAGCGTAATCCGCTACCTGGAATGCAAGCTGGCTCTCGCCTTCCGCACACGGCTAGTGGACCATGCCTATACCACCTATTTCACAGACCAGACCTACTACAAAGTTAGCAACATGGACGGGAGACTGACCAACCCGGACCAGTCTCTTACCGAGGACGTAATGATGTTTTCCCAATCCGTGGCGCATCTCTACTCGAACCTCACTAAGCCCATCTTGGATGTGATACTCACCTCCTACACCCTCATCCAGACGGCCCGGTCCAGGGGGGCCAACGCCAGCGGGCCGACCCTGCTGGCTGGGTTGGTGGTGTTTTGCACGGCCAAGGTTCTGAGGGCCTGCTCGCCGAAATTCGGAAAACTAGTAGCTGAAGAGGCCCACAGAAAAGGCCATTTGCGCTATGTGCATTCCAGGATCATTGCCAATGCAGAGGAGATAGCCTTCTACAGGGGCCACAAGGTGGAGATGCGTCAGCTGCAGAAGTGCTACCGGGCCCTGGCGGAGCAGATGAACTTGATCCTGTCCAAGCGTCTGTGGTACATCATGATAGAGCAGTTCCTCATGAAGTACGTGTGGAGTAGCTGTGGACTGGTCATGGTGGCTGTGCCCATCATCACAGCTACTGGCTTCGCTGACAGCGAAACCGCCGACGGTCAGACTCAGGTGCTGGTGAGCGAGAGGACAGAGGCTTTCACCACCGCACGCAATCTCCTGGCCTCTGGAGCTGACGCCATCGAGAGAATCATGTCCTCCTACAAAGAGGTCACAGAGCTGGCAGGCTACACAACGCGCGTCTACAACATGTTCCTGGTGTTTGGCGAGGTGCAGAGGGGCATGTACAAGCGCTCGTCCACATCTACCACGggaacaggagagaagaagaacgTGGCCAGGCCAGAGATGCACATCGATGGGCCTTTGGAAATCAAAGGAAGAGTCATCGATGTGGACAATGGCATCGTGTGTGAGAGTGTCCCTATCATCACTCCCAATGGAGACATAGTGGTCTCCAGTCTCAACTTCAAGGTGGAGGAAGGTATGCACCTGTTGATCACAGGTCCTAACGGCTGTGGGAAGAGTTCTCTGTTCAGGATCCTCAGTGGGCTGTGGCCTGTCTATGGGGGGCTGCTGCACAAACCCTCCCCACAACACATGTTCTACATACCACAAAGgccgTACATGTCCATTGGAACCCTGAGAGACCAGGTGATCTACCCAGACTCTCTAAAGGACATGCATGACCGAGGCTACAGAGACAAGGACCTAGAGGTCATACTGGACATCGTTAACCTCAACCAGATAGTGACCCGCGAGGGCGgtTGGGATGCAGAGATGGACTGGAAGGATGTGTTGTctgggggagagaaacagaggatggGCATGGCTCGCATGTTCTACAACAGGCCAAAGTATGCCCTGTTGGATGAGTGCACCAGTGCTGTCAGCATTGATGTGGAGGGAAAAATATTCCAGGCTGCAAAGGATGCTGGGATATCATTACTGTCAATCACCCACAGGCCTTCCCTCTGGAAGTACCACACTCACCTGTTACAGTTTGATGGTGAGGGAGGATGGAGGTTCGAGCAGCTGGACACCGCTACTCGTCTCTCCCTGACCGAGGAGAAACAGCGCCTCGAATCCTCACTTGCAGGAATACCCAAGATGCAACACAGACTCAACGAACTCTGTAAGATCCTGGGAGAGGACTCAGTCCTCAAAACAGCCGACGCAGCAAAGGACTGAAAGAAGAAGAATTAAAGAAAGAGCGAGATGGATGTTCAGGAAAGTCAAAGTATTATTTTTCTTTGTTTCAACGCACACCGACCGCATATTCCCATACGTTTCCAGTGTTGGGGTTGAATTTGAAGAATTCCTCAACCATGTTGTTTTATAGATGTTTTCATCGCTGGAATAGTTGAAACTTAAAATCTCTGACAAGCTGAGACTCACATTTTATTTGCTTGAACAATGAAGTAAAAATATTGTTCATTTTTAGCACTTTACTCAAGTTGAGGAAATGTAAATTGTTATTGCCGTTGTAGTTATCAAGTGAAGTAGTAGgcttatgtttttttttgtgagacGGTATTTTCCTTATTTTATTGTGTCGATTTGTTTGTGTTAATAAAAAACTACTATGTACAGGAAAAGGCTCAAAGCTttccataaaaaaaatgtgtcgttttatGAGACAAGTTTAAAAGATTGACGTTTCGGCATTTAATCGCCTCCTACGTCAGTCTTTAAAAACTGGTCTAATAAAACGTTGTTTTAATTATGGCGAGCGAGCGTTGCGCCTTTACCTGTCCAATGATGtctacaaatgtttttatttaaccttgacTCACTTTGGTTGAGCACatctttatataaaaaaatactaGAAAGGTAATTGGATGATATCAAACAATGGATCATCCGAGTTTTTACAATCATATGAAGTGATTCATTAAGGTTAGGCTAATAAGCATACAGTTTTAAAGGTTGCCCAGCTGGTCAAATTTAAAGTACAATAAATGAGTGTCCCCTTCTGTTATCTCAGCCACTGGCGCTGGGTTATGTCATAAGGACATCTTCCTTATTACATGACTGAATGTGTTTTTCACAGGTTTTCTCCTCAGAACTGCAGTATAGTAATATATTCAAAATACCTCAGTAGCTTTCAAGTTATCTGGCTCTGCATTTTAAATAACACCCTTCCCTAgaccgatatagtgcactactttgaccgcATGCCTGATTTGCCTTTGTTAGTGGCTAAGAGATGGTTATCTTAGGAGCTATTATTGGACATTAGTGCATAAGTGACAGCTGTTGGTCTGTTGCAATAGGCTTCTGGTTAACTGAACAAATACAATGGATTTCAAGGCATCCTGTCTTGTCTCcagcagagcacagcaggaaTTGGACTGGGCTCGctcacacaaacgcacgcacaagaacgctaacgcacacacacagatcaccTGGCAAAGCCCTCCTCACTGTCACGGGTAATATCTGTGGAACAGGATGTTTTGTGTCGTCTCGGTCTGCAATCTTCACCCCTATAAGAAATATGTCACATCTTCAGCAAGAGGTTTACATTGTGTTCTACGATAACCGCTGTTGTTTTCCGTTGTGGTTCAGTACGGTTTACTTGGTTGCTGAGTACAATTAACTGTTACCTTGTTATATCCACCCACACTAAAATCAATCTAGTTCAGCAATTCATATTTGTTATCAGCGACTTATCTCAGACTGTATACTGTGAACTTTGTTGTTTCTTTTTTTGATAAtgtcataaaatgtatttttaatgtaTGCATTTTAGAGTTTGATAATGCTGCCTCTGTTCAAACCTGTGTATGTACAGTAAATCTTCTGCTGAACAAAGCTGTCAGCTCTGCTGAGGTTACTATATGTCAAATCCAAGACCAGTCCTTCTAGTACTGTAGCCCTATAGCCTGGCTGTGTTAGTGCATCACCTATACCAGGGTTCTCCAACTGGCGGTCCGTGGACCGAATTTGGCCCgcaggtgattttatttggcccccacaagagcaaaaaaagtgtatttttattttttattgtttgacataaaagactaaaaacaccagcaaatcagctcctaGTGATTTACATTTTGGAAATGTCAAAGTATTCCCAagcataatagagagatatatgTGATCGAATATAGATGTAAGCAAGGTTTAAAATGATTACGTTAAagtcaaatattatatatgtttgggcttcttgccgTCAATTTGCAGActtcaaattatttgtaattattttcggcctccctgaccagccgtTCAAGAAAAAAATCAGtgactgaatctagttgatgattccTGCCCTATACTGTATTTTCAATCAGTAATACCTACAAACACTGAGTATACTGATTGGGTGGCACATAGTAGTGCTTGGTTATTTGTTTGGCTTATACCCTGACTAACAACATCAGTGTCACAGAATGAAATCAGTAACTGCAATGGCAGAATATTTACACTTGTTGTACACATACAAGTGTAGAACAAGTGCAACTACTATATTTTTACCACTACATCTCAGACTAAACTGTCTTAAAGAGAAGTGACATGGAAAAGAATGTATGTAAGTTATAAATATGTAAACTATATATTGTAATGTTAATATGGTACTTATATTTGCCTTTGCATGGAATGGGTGAGTGTGAGTGATGCCTCAATCACATTATATTTGAACTGTCTCTTTCAATCATTGCTAAACAGAGAGCATTGTGGGAGGATAAATAAAATAACTTGCACCATGTATAGTTAGTTAGTTCATGGAAGTAAAGTATTGGACTTTTGTAATATACTTGGGTATAACTACTGTTATAAATAGGTTATAAGCCTGAAAATAACCTACATATTCAGGCTTCTCCTCATTCTTTGGGATTCTAACTAAATACTTTGTGTCTTGAAATGGACACCTGACATAGTAAAACCTGATTTGACTGTact

Function

NR:

description
ATP-binding cassette sub-family D member 2

GO: NA

KEGG:

id description
K05676 ABCD2, ALDL1; ATP-binding cassette, subfamily D (ALD), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577566.2 True 5277 mRNA 0.44 10 32767995 32792331

Neighbor

gene id symbol gene type direction distance location
LOC110500277 LOC106609118 coding upstream 11903 32694217 ~ 32756092 (+)
LOC110500271 LOC106576017 coding upstream 131759 32613167 ~ 32636236 (+)
LOC110500270 LOC106566433 coding upstream 165103 32594388 ~ 32602892 (+)
LOC110500268 LOC106609123 coding upstream 182332 32570744 ~ 32585663 (+)
LOC110500267 LOC106576021 coding upstream 199579 32560550 ~ 32568416 (+)
LOC110500278 LOC106609115 coding downstream 879 32793210 ~ 32834958 (+)
LOC110500279 LOC106609114 coding downstream 49458 32841789 ~ 32957803 (+)
LOC110500281 trmu coding downstream 258144 33050475 ~ 33053507 (+)
LOC110501067 LOC106609112 coding downstream 261729 33054060 ~ 33166691 (+)
LOC110500282 LOC106609111 coding downstream 388343 33180674 ~ 33253523 (+)
G1728269 NA non-coding upstream 100016 32667611 ~ 32667979 (+)
G1728265 NA non-coding upstream 105739 32662049 ~ 32662256 (+)
G1728260 NA non-coding upstream 112002 32655785 ~ 32655993 (+)
G1728259 NA non-coding upstream 112401 32655389 ~ 32655594 (+)
G1728252 NA non-coding upstream 122979 32644794 ~ 32645016 (+)
G1728542 NA non-coding downstream 340230 33132561 ~ 33150958 (+)
G1729333 NA non-coding downstream 472563 33264894 ~ 33265132 (+)
G1729338 NA non-coding downstream 478295 33270626 ~ 33270856 (+)
G1729344 NA non-coding downstream 483716 33276047 ~ 33276267 (+)
LOC110500252 LOC106609149 other upstream 605603 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 631299 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1203401 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1259623 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1317878 31449396 ~ 31450117 (+)
G1729465 NA other downstream 529122 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 917761 33709461 ~ 33869016 (+)
G1732028 NA other downstream 2646958 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3249000 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3440791 36189389 ~ 36237829 (+)

Expression


Co-expression Network