LOC110500281 (trmu)


Basic Information

Item Value
gene id LOC110500281
gene name trmu
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33050475 ~ 33053507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470078.2
AATTCTGACTTGAATCCTATATTGAAACATTTATTATTGTGATATGCAAATTCGATTGGTGGGCAGAGGGCATGGTTTGTTGTGGACAAAGACATCACTACTGGAGAAGTGTTTGTGGGTCCGACCACCAATCACCCGGCTCTATTCAGAGACGAGGTACGAACAGATTGTTTCCATTGGATAACAGAGGACCCTCCCACTGAGCTGATCCAGACTAAGATGGAGTGTCTCTTCCGCTTCATCCACTAGATGCCTCTCAGTGAGTCACATGACACGTTAGGGGCAGACACAGTTTGTAAGGAAGTGTCATTTAATAATACCTTTACCTCCCATACGACTTAAACAGATTTAATGGGTTAAAAAATGTACACTTCGAAAGTGTTAGTGACATGTTAATAAAGTGTTGGTAACTTGTTAATAACACAGCTCCTTGCACTGTGACCTTGAACATGAATGGCTCTGTGTGGATCATGCTGTCTCAGTCAATCAGAGCACTCACACCAGGACAGTTTGCAGTGCTGTACAAGGGGGACGAGTGTCTGGGCAGTGGGAAGATCGTCCGTCTGGGCCTCACAGAGCACACACTCCAACAGGGACGAGACCTCATGAAGGAAGCCCCTGTGGCCAAGGAGAGGACTCCGGAACCAGCCAGCTGAGCCTGAGAAAGACTTCCTAGGCCCACTATCAATATGGACCTAACCTTACCTTCCAGACTTCAGTCACACTGCTGCTGGACAAGACTACTGTACTCTCACAGGCCTTATCCCATTCTCTGAACCACTACtgtagaacagaagagaacactGATCATGCTTTTGGGTCTGTCCACTCAtcaaaaaaacacacactcaaaaactTCCTCTGTACTGATACTTCTTCCTATAATGGTACTTGTGATGTACAGTATTATTTGATAGTGTGGACTGTGTAAAATCATACACATGGTAATTCAttgtcttatttatttatttggacgGATTATTAGAAAATGTAAAATTTCATATTTAAAAAATTATGGCTTTTGTTAAAATCCAAACAAACAGTGCCTTTTCCTTTTGGTGTCATTTCACCTAAACACATTTAGCATGGAACTGCATTCTTTTGAACTACTGTGCAAAATATCCGATATGTAAATAGAGAATAACTTTGATTAAGTGATTAAACTTACGATTGTTTTAAATAAGTGATTTCTGTGGCCAGCAGAAAACCTCACTGAAGAAATCCAGTTAATGTATGTGAGTCACTTTACATCTGTTTCCCGTCCTATTCCACTCTCTCCAAAAGGGGGCGAACACGCATAAGTTATACTGAGTCTTCTAAACTTTTTCAGATGCACTGTTTCTGGTGTTTAAAATAACAGTATTGATGTTATACCAAGTGGAATGTATAGGTTACTGCCTAAATAATGGAAACACTGGAGTAAATGatggatacaaagtatattgaaagcaggtgctgcCGCACAGGTGTGGTTCCGGAGTTCATTAAGCATTTAACATCACATTATGCTTAGGGTGTATAAAATGCTGGGCAGTCCATTATTTGGACTGCCATGGCCATAGGATGTCAATGCCCCCGTCCACAGGGCACGAGTAATCacaatggtttgatgagcatgaaaatgatgtaaacTATAAGCCATGGCTGTCACCAGATCTGAAcccttatgggagattctggagtggtgcctgagacagcgttttccaccaccatcaacaaaacaccaatttatggaatttcttgtggaagaatggtgtcacatccctccgatagagttccagacacttgtagaatccatgccaagGTGCAATGAAGCAGTTCTGACTCGTGGtgacccaacgccctattaagacactttatgttggggttttctttattttggtagttacctgtaCCTGTTCAATGATTTTGCAGAGTATGCATTATTTCATTTAGTTCCATTGCATACCTTCATTTTCAATGGTGATGTGATTTCCATGGGAATAAAACCTACAATTTGCCATAAGTTGAATGAAAGCGCCATACATTACAAACAGGTGCAAGGGCCACTTTTTCATTAAATCAGGCTACATTAAGATGGATACCAACATAGATGGTAGGATGGAAGGAAGCAATGGATTATAATC

Function

symbol description
trmu Predicted to enable ATP binding activity; sulfurtransferase activity; and tRNA binding activity. Acts upstream of or within mitochondrial tRNA thio-modification. Predicted to be active in mitochondrion. Is expressed in several structures, including blastoderm; blastodisc; gut; sensory system; and swim bladder. Used to study inner ear disease. Human ortholog(s) of this gene implicated in aminoglycoside-induced deafness; infantile liver failure syndrome; and transient infantile liver failure. Orthologous to human TRMU (tRNA mitochondrial 2-thiouridylase).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470078.2 True 2126 mRNA 0.41 3 33050475 33053507

Neighbor

gene id symbol gene type direction distance location
LOC110500279 LOC106609114 coding upstream 92672 32841789 ~ 32957803 (+)
LOC110500278 LOC106609115 coding upstream 215517 32793210 ~ 32834958 (+)
LOC110500276 LOC106609116 coding upstream 258144 32767995 ~ 32792331 (+)
LOC110500277 LOC106609118 coding upstream 294383 32694217 ~ 32756092 (+)
LOC110500271 LOC106576017 coding upstream 414239 32613167 ~ 32636236 (+)
LOC110501067 LOC106609112 coding downstream 553 33054060 ~ 33166691 (+)
LOC110500282 LOC106609111 coding downstream 127167 33180674 ~ 33253523 (+)
LOC110500284 LOC106609109 coding downstream 276420 33329927 ~ 33515988 (+)
LOC110500285 fam19a5 coding downstream 655954 33709461 ~ 33869016 (+)
LOC110500288 LOC106609107 coding downstream 1255592 34309099 ~ 34317797 (+)
G1728269 NA non-coding upstream 382496 32667611 ~ 32667979 (+)
G1728265 NA non-coding upstream 388219 32662049 ~ 32662256 (+)
G1728260 NA non-coding upstream 394482 32655785 ~ 32655993 (+)
G1728259 NA non-coding upstream 394881 32655389 ~ 32655594 (+)
G1728252 NA non-coding upstream 405459 32644794 ~ 32645016 (+)
G1728542 NA non-coding downstream 79054 33132561 ~ 33150958 (+)
G1729333 NA non-coding downstream 211387 33264894 ~ 33265132 (+)
G1729338 NA non-coding downstream 217119 33270626 ~ 33270856 (+)
G1729344 NA non-coding downstream 222540 33276047 ~ 33276267 (+)
LOC110500252 LOC106609149 other upstream 888083 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 913779 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1485881 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1542103 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1600358 31449396 ~ 31450117 (+)
G1729465 NA other downstream 267946 33321453 ~ 33321761 (+)
G1732028 NA other downstream 2385782 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2987824 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3179615 36189389 ~ 36237829 (+)

Expression


Co-expression Network