Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110501067 |
| gene name | LOC106609112 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 33054060 ~ 33166691 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: cadherin EGF LAG seven-pass G-type receptor 1-like isoform X2 |
| id | description |
|---|---|
| K04600 | CELSR1; cadherin EGF LAG seven-pass G-type receptor 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036957692.1 | False | 10697 | mRNA | 0.53 | 38 | 33054060 | 33166691 |
| XM_036957694.1 | False | 10655 | mRNA | 0.53 | 38 | 33054060 | 33166691 |
| XM_036957695.1 | False | 10616 | mRNA | 0.53 | 37 | 33054060 | 33166691 |
| XM_036957696.1 | False | 10610 | mRNA | 0.53 | 38 | 33054060 | 33166691 |
| XM_036957693.1 | True | 10729 | mRNA | 0.53 | 38 | 33054061 | 33166691 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500281 | trmu | coding | upstream | 553 | 33050475 ~ 33053507 (+) |
| LOC110500279 | LOC106609114 | coding | upstream | 96257 | 32841789 ~ 32957803 (+) |
| LOC110500278 | LOC106609115 | coding | upstream | 219102 | 32793210 ~ 32834958 (+) |
| LOC110500276 | LOC106609116 | coding | upstream | 261729 | 32767995 ~ 32792331 (+) |
| LOC110500277 | LOC106609118 | coding | upstream | 297968 | 32694217 ~ 32756092 (+) |
| LOC110500282 | LOC106609111 | coding | downstream | 13983 | 33180674 ~ 33253523 (+) |
| LOC110500284 | LOC106609109 | coding | downstream | 163236 | 33329927 ~ 33515988 (+) |
| LOC110500285 | fam19a5 | coding | downstream | 542770 | 33709461 ~ 33869016 (+) |
| LOC110500288 | LOC106609107 | coding | downstream | 1142408 | 34309099 ~ 34317797 (+) |
| LOC100135927 | LOC106609106 | coding | downstream | 1158519 | 34325210 ~ 34329578 (+) |
| G1728269 | NA | non-coding | upstream | 386081 | 32667611 ~ 32667979 (+) |
| G1728265 | NA | non-coding | upstream | 391804 | 32662049 ~ 32662256 (+) |
| G1728260 | NA | non-coding | upstream | 398067 | 32655785 ~ 32655993 (+) |
| G1728259 | NA | non-coding | upstream | 398466 | 32655389 ~ 32655594 (+) |
| G1728252 | NA | non-coding | upstream | 409044 | 32644794 ~ 32645016 (+) |
| G1729333 | NA | non-coding | downstream | 98203 | 33264894 ~ 33265132 (+) |
| G1729338 | NA | non-coding | downstream | 103935 | 33270626 ~ 33270856 (+) |
| G1729344 | NA | non-coding | downstream | 109356 | 33276047 ~ 33276267 (+) |
| G1729348 | NA | non-coding | downstream | 118000 | 33284691 ~ 33285245 (+) |
| LOC110500252 | LOC106609149 | other | upstream | 891668 | 32153116 ~ 32162456 (+) |
| LOC110501063 | LOC106609150 | other | upstream | 917364 | 32114413 ~ 32144886 (+) |
| G1727220 | NA | other | upstream | 1489466 | 31564135 ~ 31564594 (+) |
| G1727181 | NA | other | upstream | 1545688 | 31508056 ~ 31508372 (+) |
| G1727146 | NA | other | upstream | 1603943 | 31449396 ~ 31450117 (+) |
| G1729465 | NA | other | downstream | 154762 | 33321453 ~ 33321761 (+) |
| G1732028 | NA | other | downstream | 2272598 | 35439289 ~ 35484354 (+) |
| G1732735 | NA | other | downstream | 2874640 | 36041331 ~ 36042488 (+) |
| LOC110500325 | ppp2r5b | other | downstream | 3066431 | 36189389 ~ 36237829 (+) |
