LOC110500284 (LOC106609109)


Basic Information

Item Value
gene id LOC110500284
gene name LOC106609109
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33329927 ~ 33515988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577578.2
CCATAGTCGGAACTATGAACCTTGGAAATGCCCGATTTGCTGAATCGTTCAACGCGGCACGTAAATAATTTAAACCAGGAAAGTAGTCGAACATTTCCGAGTTTCTAGTATCGATTAGCACATAAAAAAATGTTATTCAtttttaaatttgttttatttaataccaATGTAGAAAAGTCTGTATACATACAATAAGTACATAGACAATGATACCATGTGCTAGGGGGTAACGTTACAACAAATTACAGATTCTACAAAGACCTTAAAAGAAACACACATATTGATTGTTTTAACAGCTTTCTTATTAGAAGAATGTAGAATGGTCTTAATGTACTGCTCGAATTCCTTATAGAAATCACGGAAGAGTGTTTTTTTTAATGAGTGAATTTACATGTATGAATGTGAAACTTTGCCATTAGCACAATTAGATTTATGAGGTAAAATGCTAGTACGTGAATTCAGCAACTGACAATAGTTGAAACTGACGTCAACCGCGTCTCAAATCACATTCGGTAGATCGTACTTGTGATTGGGCGATGGCTAGGAAATGTGAAACGGACCAATCCCTGCAGCGCTTGCTCAGAGGAACCCAGATCCAACATGGCGGAGGGAACTGGGTGTAAATAAACACTCGTTAGACGTTTTAAAAGCTATAGCTAACAACACTCGCACTTTTGTGTATATGACATATTGTACCGGGGAAGTAAAATGTCAACTGACGGAAACAAGAAACAATTCTGGAAAAGAAACACAGCTAAGGTCCCTGGCAGCATACAACATGTGTATGGTGCTCAACATCCTCCTTTCGACCCTCTTCTGCATGCTAATCTAATCAAAGCGGGCAACAAGCCCCAGACGACACCGGGAGGGAAGCCAAAGAAAGCCACCACCTTCCAGGAGTTTGAGAGCATCACCAGCGATGCCTGGGACGTGGGGGACGACGACGACGAGCTACTCGCCATGGCCGCACAGAACCTCAACATCGAGGTCGTCATGGAAACCGCCAACAAGGTTATCGAGAACCACAGcaagcagcaggagaagcagagACAGGACGATGCCGGCGCGgcagagctggaggagagagaggaagaggacgcAAATGAAGAAGaggtggaagaagaggaagagcagggggaggaaggggaggaatcAACCCCTGAGGTGTCGTTTGCCTCTGAGCCCAGCCCGCTTGGTGATGGCAGACTTGTGAAGTCACTGAGTGAGGCCCCCATCGGATCACCTAAGGATGTGTCGCTCCACAGACAGCAGTCCCTGCCCCACCGGCCCACCATCCCCATGGTGGCTCGTATAGCTGACCAGAACACATCCGGGACCCCAGCCATGACGGAGAGAGAGGCCTCTCGCCTGGACAAGTTCAGACAGGTCCTGGCTGGACCCAACACTGACCTTGAGGAATTACGAAAGTTGAGCTGGTCTGGAATTCCTCGCCAGGTTCGTCCAATCACGTGGAAGCTCCTATCGGGTTACCTTCCTGccaacacagagaggagagagagcacgctacagaggaagagacaggaataCTTTGGTTTCATAGAACAGTACTACGACTCGCGCAATGACGAGCACCACCAAGACACATACAGACAGattCACATTGACATCCCGAGAACCAATCCCCTTATTCCTCTCTTTCAACAAGCTTCTGTCCAAGAGATCTTTGAGCGTATCCTGTTCATCTGGGCGATCCGCCACCCGGCCAGCGGCTACGTGCAGGGCATCAACGACCTCGTCACGCCTTTCTTCGTCGTCTATGTCTTTGAGTACATCAaggaggaggtggagaactTTGATGTGTCCAGCTTGCAGGAGGAGACTTTGCGGAACATCGAGGCTGACAGTTTCTGGTGCATGAGCAAGCTGTTGGACGGCATTCAGGACAACTACACATTTGCACAGCCTGGGATCCAAAGAAAAGTCAAGGCTCTGGAGGAGTTGGTCAGCAGGATCGATGAAACGGTGCACGTCCACATGCAGCAGTATGAAGTGGAGTATCTCCAGTTTGCCTTCCGTTGGATGAACAACCTGCTGATGAGAGAGCTGCCGTTACGCTGCACTATACGCCTCTGGGACAcctaccaggCTGAACCAGAGGGATTCTCTCACTTCCATCTCTACGTGTGTGCTGCTTTCCTGGTGCGATGGAGGAAAGAGATTCTGGATGAGAGAGATTTCCAgGGTCTGATGATCCTGCTGCAGAACCTACCCACCATGCACTGGGGCAACGAGGAGGTCAGCGTGCTCCTGGCCGAGGCCTACAGGCTGAAGTTTGCCTTCGCTGACGCCCCCAACCACTACAAGAGATGAGTCTGGCCCATGTGGCCCCTGACAGTTAGCTACTGAACCCCTGACAGAGGCCCCCTGGAGGACGGATGGACCCCCTCCTCGACTTTCTTGTCCCTCGGCAGTCCACGACCATTGCTAATAGTAGATTAAAACAAAAACCACATttaggtcccaaatggcaccctattctctacaaagtgcattacttttgaccagagccccaagtagtgcattatgtagggaatagggtgccatttgggaagcatccaACCAGTGCTTCTTGGTATGTGTGTACCTTTCCAACCGACTGTTCTTCTTAACTCCTCTTCTCTTTGTTCTTAACAATGAAATTACATTTGTGCAACACTGCAACAACATCAATGCCTGTCCCATCGAAGTAGACCCCAACCAAAAAAGAAAGACCTCCAGTCAGTATGATAATGGAGATCTTGCTGCAGACCCACGGATGACTGTTCTagactgtcctgtactgtactgtttgtCCCTGACTGGCCACAGCAGCCTCAACATGTCCCGAGACCTAATGAATTAATTGTAGTCCTGAACTAAcccagtgtgtgggggggggggggggggggggggatagagagcGAGACCTTCTGTACTAGGTTGATATCTGTCACTTTTAATTCCTAAGGGAACTGAGGACACACACGTCATCATTCTAGTCATCCCTAGTTGGCATCGAgctcttctctcatctccacgCTCCATGCTTTCAGTTTAAGACAAGCGGTCAATCCCCCAGAGACAAGTGGGTTTTTTAGTTAAAAACAGAAACACATTCACATAAAAGTCAATAATTAGCTAATAGGGAAATCATAaagtatgtattattatggatggTTTCATTCTGACTCTGACATGGTCCGCAGGGCTGGTCTAATAATTTAAGGTCTAACCACACTCTCTGAACTCTATTGTATTATGTCAGATATTTGTCGGTTGGCTGAGGGAGGGACGAGTGTCGCGTGACTCTGCCTGACTAACTCGATCAGTCTATCAGTTAGACACGTTGGCACAGCACCATGCAGTGGTGAGCAGTCACCTTTTAGGCCAGGAGATTTCCCAGTTAGGTCACATggtctgaaaaaaaaaaacaactccagGCCGTAGGCCTTTACACTCGTAACCATATACGGGTTGATaatggcagatttgggcactAGTAAACAActaaattggaacgcagtggctgtacagtaacgtGCTATACATGTCAGAGGTCTTGCTCTGCGCTTCACATCGCTGTATGGgtttttgactgacagccgttctgaacttgagcacctcgCGTGACCTTGTtgtgaatgagaatgtgttttcagTCAATTTACCGGGTAAAACTGAAAATTGCTGTACATTTTTTTGAAAGGTGAGGCAtagaggattataataaataccgttTTGTCATGCAAGCAAGACAAACACCCATGAGTTCAAATATGCACTTCACATttcataaaactcatgtcatatatagtgtcaacgtttatgatcactatgtttgatatACAGTTACAAGATGGCATGGTGTCATACACTgcgttgttctgaacagaatgagcctatgtttgtctattgtgaagaGAATTTGCCACGGCAGACGCACTTGAATGCACTCAAGACTCCTTTCTTTGCGCACCAAGATTATCATCTGTTTTCCTGAATTGCATTGTGAAAGCAAGTAATATCacattttataacttagctagtcagTTTTGGCagtagaacaagctttcaaatgaggcccacctgacccagattgcgatttataatggaccgtttttggactgcgtaaacaacaacagtaattgtgtgatgatgcgaatgcagggttgtgttccaaacaaaacaactacaagtgtatTTGcgctagttcctcaacggcacagctaggagagctcataaaggcaccttatagttgaagacaGTGCTTTGAAATGACCTAGGAACTGTGGACACTGGAGAGGTATGTGGCCACaaggagacaccagttagtcctcgcTCTCAAACCCTTGTAATcgttttgtcttatgttgcacctaccccacattttccaggaatgttcctatcatgttactgaatatatccagagtattttcagattttgttaCCAACAAATGCAGtgaaagtacagtaaatgtagaACGCACATAAAATCATGTGTAATCATTTTCCCATAAACTCctaactgttccctttcaattgctaccatggtcaTGCATATgtttttcatatttcttctgtaagaaacatttcaatttagccctatccatattgTCCGATTTCaacgagtgtaaagggttaaaaatGACTCCCCAAAACACAGAAATAGGACCACGAGTTTTGTTTTTTTCTGGTCAGGCTACTTGGTCAGGCAAAACTCCTGGACTACGACAATTTGTAACTGCTCATAGCCCAGAACTAGGGCCTATAGTTAGATTTTTGGAAAATATTAACTAAATTGCTGACATGGGTCATTGTATCCAGTCCAGTAGCTTTGTTGGTTATTCAGTCTATTCATAAACACTTACTGACTGAGGGCGTTAGGGTGTAATACATTAACTCTCTCCGTTTGCCTTCATTTGACTGCTCAAACTCAACTCAGTTCCACTcctgtttttcattgttcccctctaatcagggactgatttagacttgggacaacaggtgggtgcaattaatgatCAGGTTGAACAGAAAGCCAGCAGGCTCTGCACCATGTGGGGTAAGAGTTGTATACCCCTTGTGTAGAGGATTGATATATGATGTAAATTAGATGTTGAAATAATATGTACAACTTGTATCATCAAAAAACATCCTGTCAGGGAACACTGAATATCAATAATTGTTGCATGAGCCCCTCGATGATGTGTGTTGTTGATATGTGGGGTTGGGAGTGTATGTATAGATGGGGCAGCTTAATACTCTCAGTATTTGAACTTCCTCAGCTTCTTTTGATCATGTCGGTAACGTTTTTGCGCTCCATGTCAGTTCCAGGCCCAATTTCCTATTCTCACATTGATTAGAAATTTAAAAAACTGCACTTgataaaagtacattttcttcCCTTTTTTTGTGCGAAATATATTATTTGCAATCCGCTTTAAaaatcagtctctctcctcccttttttaCATACTGTTTACATGAGCCTGTTAAGTTGTGCCTAATGTAGAGAGAGCAGATCATCATAgatatttattttaccttaatttaaGCTCTGCAAATGAAACGAGGATGTTTATTCAGTTGATGTGTTCACTCTCTGTGTTTGCTAAGCCATGACAGTGACTGCAtccaaaatggccccctatttcctatatagtgcactactttatgggctctggtcgaaagtagtgcactatatagggaatagggtgccatttgggacgcaaccagtGAGTACACAGAATCACATCGGTAAGTCTAGCAGCTGCCTTCTCTGGTATCCTTATGTGTTTCAACTTGGTTTGATGCTCCCAACAAACCTTTACAGACACACCTTCTGTAAAAGTCACAAGCCcttggttaccatggttactgTGGTGACCAGGTGTCCGTCTGCTGGCTGGAGCCCTCGGACACACATACTGGACATTGCGGTCAGCATCTCATGGGGCATGACCTAACATGTTTGGTCTCCCTACTAAAGCTTTTTTTTTAAGGGTTGAATTTCACTCTTTCTTTTGTTCTGTTTCTTTTCAGAGATGTTAAAATGTTTCTGACCAAACTAAGACTGGTCCTCTTTCCCTTCTGACTTCTGAAGAGTTAAGACATCTGAAAGTGTGAATCTCATACAGCGGAGAGGgattgtgattattatttttttaaatgtatgtgtaCAGAGCAAATGAATTTTGAAACAAAGATCTGTAAATAGAAAAGTGTAAATAAATGCTATATATGACCAAA

Function

NR:

description
PREDICTED: TBC1 domain family member 22B-like isoform X1

GO:      GO:0005097,GO:0032313

KEGG:

id description
K20360 TBC1D22, GYP1; TBC1 domain family member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577578.2 True 6249 mRNA 0.44 14 33329927 33515988
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Neighbor

gene id symbol gene type direction distance location
LOC110500282 LOC106609111 coding upstream 76404 33180674 ~ 33253523 (+)
LOC110501067 LOC106609112 coding upstream 163236 33054060 ~ 33166691 (+)
LOC110500281 trmu coding upstream 276420 33050475 ~ 33053507 (+)
LOC110500279 LOC106609114 coding upstream 372124 32841789 ~ 32957803 (+)
LOC110500278 LOC106609115 coding upstream 494969 32793210 ~ 32834958 (+)
LOC110500285 fam19a5 coding downstream 193473 33709461 ~ 33869016 (+)
LOC110500288 LOC106609107 coding downstream 793111 34309099 ~ 34317797 (+)
LOC100135927 LOC106609106 coding downstream 809222 34325210 ~ 34329578 (+)
LOC110500293 LOC106609102 coding downstream 1250732 34766720 ~ 34782583 (+)
LOC118942784 NA coding downstream 1268425 34784413 ~ 34792564 (+)
G1729462 NA non-coding upstream 10881 33318824 ~ 33319046 (+)
G1729359 NA non-coding upstream 20183 33309524 ~ 33309744 (+)
G1729352 NA non-coding upstream 35980 33293708 ~ 33293947 (+)
G1729348 NA non-coding upstream 44682 33284691 ~ 33285245 (+)
G1729344 NA non-coding upstream 53660 33276047 ~ 33276267 (+)
G1729617 NA non-coding downstream 19889 33535877 ~ 33536136 (+)
G1729769 NA non-coding downstream 23956 33539944 ~ 33540150 (+)
G1729781 NA non-coding downstream 29490 33545478 ~ 33545693 (+)
G1729782 NA non-coding downstream 29912 33545900 ~ 33546114 (+)
G1729788 NA non-coding downstream 36989 33552977 ~ 33553203 (+)
G1729465 NA other upstream 8166 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 1167535 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 1193231 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1765333 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1821555 31508056 ~ 31508372 (+)
G1732028 NA other downstream 1923301 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2525343 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 2717134 36189389 ~ 36237829 (+)
G1733187 NA other downstream 3241001 36756989 ~ 36760221 (+)

Expression

LOC110500284(LOC106609109) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110500284(LOC106609109) Expression in each Bioproject

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LOC110500284(LOC106609109) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network