LOC110501068 (LOC106575995)


Basic Information

Item Value
gene id LOC110501068
gene name LOC106575995
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34269811 ~ 34288000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110501068
TTCCCCTCTGAAAGGGGAGAAGTCGAGGGACGTCCGTGCACTGATGAAAGGCAGGAAGATGAAGAGCAAGAAGGTGGAGACAGAAAAAGAGGTCCCACCTGTGGCTGTGCCTAGCTTTCCTCCCCAAAGGTTAAACACCATCCTCAACCGGGTGTCTATGCAGAAGAAGAAGGTATTTGTGGAGCTGGCTCTAAACTACTGGACTCTAAAGAGACAGGCGAGGTACGGCATACCCCTCATCAGACGACTACAGTCCAGCCAACAGTCCCACCAGAAGACCTATGCTGCACAGCCGGTCAGTCAGCTGGTCATGCACTACGGCCCCCCTGTTTCTGCCACAATTCACGTCCCCTGGCTGaaggagagtgaggaggagagccGGGCTCTGAAGGAGCAGCTCAAGGAGTGGCATCGTCTAAGACACGACCTGGAGAGAGCCAGGCTATTGCTGGAGCTCATACGCAAGAGGGAGAAACTCAAGAGAGAAGAGATGAAGATGCAGCAGAGCCTGTTGGAGGTCCAGCTGACTCCCTTCAGTATCCTGCTCAGGTCTGTGCTGGAACAGctacaggagagagaccagtccAATATCTTTGCCCATCCTGTCGACATCAAAGAGGTGCCTGACTACCTTGACCACATCAGGAACCCCATGGACTTCGCCACTATGAGGAAACGCATTGACGACCAGGCCTACAGCAACCTGAATGACTGAGTCCGACTTCAACCTCATCATCTTCAACTGCATGAAGTACAACTGTAAGGACACCTTCTTCCACAGTGCGGCCGCCCGTCTCCGAGACCAGGGGCTTTGATCAGGAAGACGCAGAGGGATGTAGAACGAATCGGTTTCGAGAAGGACCGTGGGATGCACCTTTCCGAACCGCCCAAGATTGAAGCTCCTCCACGGTTTACCTGGGAGGATGTGGACCAGTTATTGGTCCCAGCCAACCGGCAGCACATGCCTCTGGAGGAGCAGCTGAAAGTGCTGCTGGAGAAACTGGACATGACGCACTCCATGAAGTCCAGTCCGTCACGCTCCAAAAGCCTCAAGCTGCTCAAGAAGACCATCAACAACGTGCGCAGTGAGATGAGCCTCAGCCTTAGGAGAGCCTCCCACCACTCACATTcttactcctcttcctcccactgGTCATCCCATCCGGAAAGGAGTAAAGCTGGGGAGGCAGAGGGGGTGAAGACCAATGGACAGAGCCCTGATAACGAGGGGGACAAATCATTACCTCCCAAATTGGAACCCTCTGACTCCCGTCCTCCTTTCCTGCACTTCGAGAGTAACTCAGAACCCCCTACCCTTAAACCCATCCACCCCAACCCCACTCCGGACAGCAAGACCCATGGACAGGTCAAATTTGACCGGAAGAAACCCAACAACACATTCTCAACCACTACCAAGACCCTTCTCAATGGCCACGCTGAGTCCCAGAACCCACTGCTTCTCTTAGAGGGGGGCGTGAGTATGGTGGCCACCTCCACCCTGGCCCAACCCTCGGGTACGACTGTCAACCGCCGCACTGCCGTACTCTTCAGAAAATCCATGACCTCTAGCCCTGGGAAGAAccagggggggggagaggaggaggtgaggcccAGACAGGGTGCCCTCAGCTGGGCACCAAGACTTTCCTGTCGGTGATGATCCCCAGGGTGGAGACCCTCCTCCACCCCAGgaccaggaagaggagccacAGTTCCAGCGTGGGGGTCAGCGAAGGGTGTGGAGACGGGGAGTCCCCTGTCAAACACATTGACACAGAAGTTGGCAATAACAATATTTGGATGCCTGCTAGTGCTGCAACAGTTGTTCTGGAACCTCTAAAGCTAGTTTGGGCAAAATGTAGCGGATACCCTTCCTATCCTGCCTTGATCGTTGACCCCCACATGCCCCGGGTGGGATGCCAGCACAACGGGGTGTCTATCCCCATGCCTCCCCTCGACGTCCTCCGGGTCGGAGAACGGATGCAGTTCAAGAACGAAGAAAAACTCTTCCTCGTCCTATTCTTCGACAACAAACGCAGCTGGCAATGGCTTCCTAAGTCTAAGATGGTCCCTCTGGGGATCGACAAGATCAAGATGATGGAGGGCAGAACATCCAGTATCCGTAAGGCTGTTCAGACTGCCTTCAAACGTGCCATGAACCATCTTAGCATCGTTCAGGACGAACCTGTCAGTGACATGAGCGACgtggactaacacacacacagacacacacacccaacccttGAATTACTGCTCATGGTCTTGTCTCAGACCTGAGCCTGGCCTACACTCCTTCCTTCTCCACTTTGTCAGTCTTTCCAAAGGTCTATGCTGGCTGTTTTTAACAGGTGCCTTGCTACCCCCCTGGCTTGGTATGGTTCCCCCTTCCACGTCAGTCCTCGCCCGCTGGTCTGACGACTGCTGCTTTAAAGAATGTGCCCCAGTTCCCCTCCTATCTACTGTTCTTCATGGTCGCGTTCATGatgcaccaaatggaagaaaacaactCGCTCATCTCGCCTTATCAGTGGTGGAAACAGTACCCAACTAtcattcttgagtaaaagtaaagacaatagaaaatgactcaagtaagtcacccagtaaaattctaccagagtaaaagtatttggtttaaaatatacttaagtatcaaattccttatattaagcgaacca
>TU1982318
ggtggggtaaactcaaaacattttttttttagatgcatgccacaacacaacactaaacaatacattaattggactataatggtgacaaatggtgcccacacaCTGTTTGGGCCTACATTAagctgacaattgagatgtataaACTATTGCATCAGGGGACGACGAGCAGGTAAGAGGCAATTAATGAGCGAGGTAGGATGGACTTAGTCAATATAactttgttcagcacttttgaaatgtacagcaacagaattcagaacatgggccgttcttaaggtgttctccctgtacaccaagtcagataAATAAAGggagcatataagcagacaatgaaagctcttacaatatttgattatGACATTTTGTTAAACAGGCTATAAGctatgtgcaccaccaagtcagaacagtaggctaaaaggggaaaagggaccaaattattagtgAGGCAcctgggctactaacagcttactacacaacatacacatagtattactttcttagctacagtatacatatctccctgacatattacattatttatgcagcagcatacaatacattttggaCTCACTTTggtgtgctgtgctcacttgaacaggaaggtggtgtggccaatgaccttgatccttcttggatgggcacttctaatgtaactctacgGCAACACGCAAGGGGCTTGAATTtgagctctccctgtagattttgtgACAgtacactgagccaatcacggtgcaactagATAACATTACCAACCTCtatgctccgtattttctgctggctaccccaccaccacagaaagcactgagctaggctgacaCACCCGCATTTTGGAGCTgcattactcaagaaagcaaacaaGAGTCCGCTTGTATGCGGCCTTATTAACTCAATTTTACATATAGATTTtttcattgtttgcaaactgatatgggACCTGTATTAATGCCAGAATGACGGGTCATCACTGATTGCGATAGCCTGTACATCTTTTGATTACCAATGCACGGTTCAGACTCTGCCTGGTGGCCGACATGCCTGACTGTGCccattctctctcgctccctccctcgttAGCTCGCTCTTTCTTTGCTGTGATAGATTAGTTTTTGTTCTCAGAGGTAGCCACAGCAACTAGTTTCCTCCCTTGCAAAAATACTGAATCTTAGGAGTCGACGAGTTGATGCCTGACACCCAGAAATGTGAGTCGACACCGGGAATTGACAGGCAAGGAGTTGAGGAATTGATTCTAGTGTGCCTGTGAGAATCTGACTAGTAGAGGCTGACAACGACTCTTCCTCTTCCACAGTGGAAGCAAACTCACATTGAAAAACAATGTAAGTGTACAAGAAACAAGAAGATAAAGTCTCACTGTAGTAGTTAGACCAACTTTTATGCCTGTTCCCATTGCTTCTAATACAAACCTTTCAGCTCTTCACTCGCAGTGCACACAGCCCtccagccaggcagtgttgctTCGCGAGGTGAGATAGCTATAACGTTACGATTCCTATTTATTTGTGCATTGCCAAATATGAAACCAAAAGGAATAAGTACTTTAAACAGCTACAGCCCCATTTATTTTTCTATAAATCACTACTCGCACGTGCCAATACTTGACTTTGACCAATGTGGCTGGTGAATTAGAAATTTGTATGCGCCAATATCAAAATCTACCCGCATTTGGTGGGTGTTAATTTAAGGCCCTGCTTGCTACCCCCTTCATCAAATCTTGAGTGAGTGTTGTTCACACACTATCTGTTTGAAAGGTGTAACATCCTACAAGTTTTGTCTTTGCCTTTCATGGTAGAATAAATCCTAGGTCCATATCTTCTAAGTCCTCTAGATGGTGCCATTGTCAAATAAACAGATCTGATTTGACCTTAGTTTAAGAGGACTAAGTGGACGCACCTCTTTTCAACACAAGcaccagctgtgtgtgtttgagcatgtgtgtgtgtgtgtattcaagtATACTGTGCCATAACACTCCAGGCACCACTCCCTAGTAAACATGGTACACCTCTTCCACCACGTTAGATCGTTGACCCCCACATGCCCCGGGTGGGATGCCAGCACAACGGGGTGTCTATCCCCATGCCTCCCCTCGACGTCCTCCGGGTCGGAGAACGGATGCAGTTCAAGAACGAAGAAAAACTCTTCCTCGTCCTATTCTTCGACAACAAACGCAGCTGGCAATGGCTTCCTAAGTCTAAGATGGTCCCTCTGGGGATCGACAAGATCAAGATGATGGAGGGCAGAACATCCAGTATCCGTAAGGCTGTTCAGACTGCCTTCAAACGTGCCATGAACCATCTTAGCATCGTTCAGGACGAACCTGTCAGTGACATGAGCGACgtggactaacacacacacagacacacacacccaacccttGAATTACTGCTCATGGTCTTGTCTCAGACCTGAGCCTGGCCTACACTCCTTCCTTCTCCACTTTGTCAGTCTTTCCAAAGGTCTATGCTGGCTGTTTTTAACAGGTGCCTTGCTACCCCCCTGGCTTGGTATGGTTCCCCCTTCCACGTCAGTCCTCGCCCGCTGGTCTGACGACTGCTGCTTTAAAGAATGTGCCCCAGTTCCCCTCCTATCTACTGTTCTTCATGGTCGCGTTCATGatgcaccaaatggaagaaaacaactCGCTCATCTCGCCTTATCAGTGGTGGAAACAGTACCCAACTAtcattcttgagtaaaagtaaagacaatagaaaatgactcaagtaagtcacccagtaaaattctaccagagtaaaagtatttggtttaaaatatacttaagtatcaaattccttatattaagcgaaccagatggcaccattttttattttacggaaagccaagggcacactccaacattcagacataatttacaaatgaagcatgtgtgtttagtgagtcccacagatcagaggcagtagggatgttcggttgataagtgcgtgaatttcaCTATTTGCCTAAGAaatcaaaatgtaacgagtacttttgggtgtcaaggaaaatgtatggagtaaaaagtacattattttctttagcaatgtagtgaagtaaaagtagtcaaaaatataaatagtaaagtacagatacccaaaaaaacgacttaagtaaaaatacttgaacgTACTAATTAATTGCTTTAATCCACTGCACCTTATGCCATTTATTTCCACTCAAAACTACCTACTACATTTATGTTAACTCTGTAAATAACTGCAATATTTGTCTGACACACTAACTTATTTTGTAGATTGAGTGAA

Function

NR:

description
bromodomain-containing protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110501068 False 2678 mRNA 0.53 10 34270261 34288000
TU1982318 True 3278 TUCP 0.43 2 34269811 34273352

Neighbor

gene id symbol gene type direction distance location
LOC118942783 NA coding downstream 965895 33300216 ~ 33304366 (-)
LOC110500280 LOC106609113 coding downstream 1229453 33037901 ~ 33040808 (-)
LOC118942920 NA coding downstream 1428316 32834421 ~ 32841945 (-)
LOC110500274 cssa07h12orf40 coding downstream 1502422 32755608 ~ 32767839 (-)
LOC110500273 LOC106609119 coding downstream 1580498 32679894 ~ 32689763 (-)
LOC118936404 LOC106575995 coding upstream 76 34288076 ~ 34292270 (-)
LOC110500287 NA coding upstream 4066 34292066 ~ 34295197 (-)
LOC110500289 LOC106609155 coding upstream 30272 34318272 ~ 34325044 (-)
LOC110500290 LOC106609105 coding upstream 84230 34372230 ~ 34376541 (-)
LOC110501069 LOC100306760 coding upstream 317362 34605362 ~ 34646912 (-)
G1730801 NA non-coding downstream 38259 34231775 ~ 34232002 (-)
G1730635 NA non-coding downstream 110967 34159045 ~ 34159294 (-)
G1730602 NA non-coding downstream 136185 34133767 ~ 34134076 (-)
G1730573 NA non-coding downstream 156808 34113175 ~ 34113453 (-)
G1730441 NA non-coding downstream 256768 34013217 ~ 34013493 (-)
G1730840 NA non-coding upstream 68045 34356045 ~ 34356437 (-)
G1730843 NA non-coding upstream 72975 34360975 ~ 34361234 (-)
G1731157 NA non-coding upstream 266708 34554708 ~ 34555814 (-)
G1731156 NA non-coding upstream 267871 34555871 ~ 34565175 (-)
G1731160 NA non-coding upstream 294300 34582300 ~ 34582635 (-)
LOC110500269 LOC106609159 other downstream 1665631 32603262 ~ 32604698 (-)
LOC110500257 LOC106576032 other downstream 2000600 32254847 ~ 32269661 (-)
G1728665 NA other downstream 2101327 32167669 ~ 32168934 (-)
G1727426 LOC107662719 other downstream 2670772 31599146 ~ 31599489 (-)
G1727354 NA other downstream 2777959 31491520 ~ 31492302 (-)
G1730761 NA other upstream 37225 34325225 ~ 34329576 (-)
G1731328 LOC106609102 other upstream 485466 34773466 ~ 34773878 (-)
G1731917 NA other upstream 925717 35213717 ~ 35245060 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005173 NA non-coding NC_007123.7 CM002896.2 8388330 ~ 8394645 (-)