Item | Value |
---|---|
gene id | LOC110500288 |
gene name | LOC106609107 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048585.1 |
NCBI id | CM023239.2 |
chromosome length | 64935962 |
location | 34309099 ~ 34317797 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
id | name | namespace |
---|---|---|
GO:0003677 | DNA binding | molecular_function |
GO:0046983 | protein dimerization activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021577585.2 | False | 5143 | mRNA | 0.43 | 2 | 34309099 | 34317797 |
XM_036957700.1 | False | 5212 | mRNA | 0.43 | 3 | 34309115 | 34317797 |
XM_021577584.2 | False | 5250 | mRNA | 0.43 | 2 | 34310995 | 34317797 |
TU1982279 | True | 377 | lncRNA | 0.39 | 1 | 34309585 | 34309961 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110500285 | fam19a5 | coding | upstream | 440083 | 33709461 ~ 33869016 (+) |
LOC110500284 | LOC106609109 | coding | upstream | 793111 | 33329927 ~ 33515988 (+) |
LOC110500282 | LOC106609111 | coding | upstream | 1055576 | 33180674 ~ 33253523 (+) |
LOC110501067 | LOC106609112 | coding | upstream | 1142408 | 33054060 ~ 33166691 (+) |
LOC110500281 | trmu | coding | upstream | 1255592 | 33050475 ~ 33053507 (+) |
LOC100135927 | LOC106609106 | coding | downstream | 7413 | 34325210 ~ 34329578 (+) |
LOC110500293 | LOC106609102 | coding | downstream | 448923 | 34766720 ~ 34782583 (+) |
LOC118942784 | NA | coding | downstream | 466616 | 34784413 ~ 34792564 (+) |
LOC110501070 | wnt7b | coding | downstream | 599895 | 34917692 ~ 34931171 (+) |
LOC110500295 | LOC106609100 | coding | downstream | 711462 | 35029259 ~ 35033416 (+) |
G1730741 | NA | non-coding | upstream | 2890 | 34305368 ~ 34306209 (+) |
G1730742 | NA | non-coding | upstream | 6586 | 34301668 ~ 34302513 (+) |
G1730744 | NA | non-coding | upstream | 11397 | 34297169 ~ 34297702 (+) |
G1730651 | NA | non-coding | upstream | 90375 | 34169294 ~ 34218724 (+) |
G1730581 | NA | non-coding | upstream | 189723 | 34118996 ~ 34119376 (+) |
G1730861 | NA | non-coding | downstream | 61791 | 34379588 ~ 34379848 (+) |
G1730866 | NA | non-coding | downstream | 64396 | 34382193 ~ 34382447 (+) |
G1730956 | NA | non-coding | downstream | 187445 | 34505242 ~ 34558860 (+) |
G1730994 | NA | non-coding | downstream | 257451 | 34575248 ~ 34580030 (+) |
G1730999 | NA | non-coding | downstream | 265410 | 34583207 ~ 34583466 (+) |
G1729465 | NA | other | upstream | 987338 | 33321453 ~ 33321761 (+) |
LOC110500252 | LOC106609149 | other | upstream | 2146707 | 32153116 ~ 32162456 (+) |
LOC110501063 | LOC106609150 | other | upstream | 2172403 | 32114413 ~ 32144886 (+) |
G1727220 | NA | other | upstream | 2744505 | 31564135 ~ 31564594 (+) |
G1732028 | NA | other | downstream | 1121492 | 35439289 ~ 35484354 (+) |
G1732735 | NA | other | downstream | 1723534 | 36041331 ~ 36042488 (+) |
LOC110500325 | ppp2r5b | other | downstream | 1915325 | 36189389 ~ 36237829 (+) |
G1733187 | NA | other | downstream | 2439192 | 36756989 ~ 36760221 (+) |
zgc:109889 | LOC100194703 | other | downstream | 2930830 | 37248296 ~ 37314293 (+) |
G1730746 | NA | non-coding | downstream | 178 | 34310139 ~ 34310515 (+) |