LOC110500290 (LOC106609105)


Basic Information

Item Value
gene id LOC110500290
gene name LOC106609105
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34372230 ~ 34376541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577589.2
ACTCGTCCAAAAATATTGGCGTTATAGAAAAGGTAGGGAAAGACCGTGCCAGAGCTCAAATCCGTTCCGTGATATCAACACAGTCCCTTGGATTTCTTACAAACTTCTTCGATTGCAGTTAACAGCTCTGCAAGTGTCCTTTCTTCAGTACTTCAAGAAAACTGTAATCTTCCAAGTGCAGAAATCAAGATACAGGATTCTCTTTGTACGCGGCGTTTATAATCTGGAAAAGATAGAGGCGGCATTGTATTTGAGTCACGGCGACGGGCGGGTGGGGTTGGCACACTGGAGTTATTAGCTAGCGTTAGCCTTTTCAATCATATTTCTATAGGATTGGATCGGGATCTACCTTTTCAGATAAACAAGGATTTCGTCTGTCTTCCGTTTGAATATGTTGCTGTCAAAGTTTGGCTCATTCTCACACATTTGCAACCCCTCGAGCATGGACCCGGTGAAAATACAGCTCCAGCCAGTTAAAGTGGAAAAGGAACCGTTCGAAAAGGTTTACAAGGTGGGATCCGTGCTCGGCAGCGGTGGCTTCGGCACAGTCTATGCCGGTAGTCGGCTCTCCGATGACGCACCGGTCGCAGTTAAACACGTGCAGAAGGAGCGGGTGACCGAATGGGGTACTATTAATGGTGTGATCGTGCCTTTGGAGATTATTTTATTGAAGAAAGTCAGTTCGTCGTTTCGAGGGGTTATACAACTCCTGGATTGGTATGAGCGACCAGACGGCTGGTTGATTGTCATGGAACGACCGGAGCTGGTTAAGGATCTTTTCGATTTCATAACTGAGAAGGGCGCTTTGGACGAGGAGACTGCGAAGGGATTTTTCCGTCAGGTTTTGGAGTCTGTCCGCCACTGCTACAGCAGCGGAGTAGTTCACAGAGATATCAAAGATGAAAATCTGCTTGTAGACCTACGCACTGGGGACCTCACGCTTATTGACTTTGGTTCAGGGGCGATTCTCAAGGACACAGTCTATACTGACTTTGACGGTACAAGAGTATATAGCCCGCCAGAGTGGATTCGCTTCCATAGATACCACGGGCGCTCGGCTACGATGTGGTCGCTAGGGGTGCTTCTGTATGACATGGTCTGTGGAGACATCCCCTTTGAGCAAGATGAGGAAATCCTCCAGGGGAGACTGTACTTCAGGAGGAGAGTGTCTAATGaGTGCCAGCAGCTGATCAAGTGGTGCCTGTCGTTACGGCCCTCAGATAGGCCTACTCTGGAACAGATCCTGGACCACCCTTGGATGCGCTTGGCTGGGGAAGTGTCGATATCCTCCAAGACGGAGGATGGGGACATCCGGCTGAGGACCATCAACACGGACATATCTAGCACAAGCTCCAGCAAGGAGAGCCTATgaaagaggggatgagaggaaaTAATGGACATGTTAACTGTACTTAAAGGGCTCTTATGCCCCACCATGGCTTGGGCAGgcagaaaacattttttttttgtatggaATTATTATAATTTATTACAGTTTGTTCTTCCTTTTGATCTTTTATTTTTATACCTCATTAATTGTTTCCTAATGTGGGACATTTGCTGTTTGGGGCGGTCTTTACCAGTGACTATTTATTTTGTACTTTTATTATTTTCTAATTTGTTATAACGGTGGGTTTATGCATCTGGTTTAAAGCCCCCTATTCAGACCGACATGGCTGCTCTCATAGAGCTAGGAGAATActttatttttaaacattttgattTGTAGTGCCTTTTTGAAAGCTGCTTCTCGGGGCTTTTGTCATAATTTTTGTTTCGTTATAACCCTTTCCGGCTGGTTTGTTTGTACGTATCCCACCCTGTCATGATGGAGATGAGTTGTCTTCTTCCATAACAGTGTGGTAAACTACACCACCCAGCATGCTTAGGGAtcataggagggggggggggatgtgttGACCATGGAATGCTTGAAACAACTCACTCACACTGCACCCCCTTACTAAGCTGCTCAATCATACTATAGCCTCAGTCATTTGTATTTCTCAAAATTGAATCCTTTCATTTCTGAATGTGTATTAAAACTACATATCTGTGTGTTTAGCCCCttggaaatgtattttatttaaatgtattgcCTTTCCCCCATCTCGTAGCTGGCACTATCACCTGCCCTGAACTGGTGTATCCATGGCTTAAGTGTGAAATGCACAATCAATGCAATATTCATGGGCTATTTTTCAATACAAATATTGTGcaggtttttttttcttcctatgCTTTTAATTTCTTCAGAACATGTAGACGTTCCACACTCTTGAagcttatttatttattgtcgATGTTTAAGAGTGAGAAATCCCAGAGTTTACATATCTTTACATGGCCTTTTGTTTTGCATTCCTGTAATTTTCTTTTACGCAATTTGTTTCGATTGTGGATGGATGCACTTAAGTTGTCTGAAGGGAATAAAACAAGGATTACATTTGGAAGAGCTATGAATGTTATttaacttaaaaaatatatatattatagtccTTTCTGTGGTAATGTTGGGTTGAATAGGGCTATTCTAGTTAGTGACTAATGTGGCTTGCCTAGTGTTAGATATTCTCTTTCAGTTTAGCTGTATGACATGAATGATAGAGATctggatatattttttttatacaaactTTTCAATTAAATATTTTTGTACATAAA
>TU1982420
TCATGAAGTGTTTTCCTCAGGTGGTAACGTTATCAGCCATGTtcattttgttgtccttatgtaGTTATTTATTACATTATCTCATATTAGTCAATAATATAACACACTAGTGTAGTAAAATAGGTTATTGTTATATGTTGATCATTGCCTGTTATGTTACAAGAAACGCACATTTCAAAGCCTAGGTAATGGCTATTGGGTCAGCTGCCACGTAACATCTGTTTGTTGTGAAACCTGAGCTTGGGCTGATTCATGTCACGTGATAGCTCGCATTGcactcaagtttttttttttttttggtatccAAGTTACTCATGCTGAGTTGTGGAAAAGAAAAGGGCATTATAATGACAGTATAAGTCCTTGTTTGCATGGAATTACACTTGCCTTGTTCAGCCTTTATAGAGACAttatgactttaaaaaaaaaatgtatatcaaTTTATGTCTTACAAAATCCTACAGTATTGCAATATAGTCCTGTTATTGTCACATGAAATGCCCCAAATAAACTGTTTGATGTTTATTATAGAAGTAAACATCACTATTATAGAAGTAAAACATCACTAATGAGCCTttcccccctttttctccaccaGGTACAAGAGTATATAGCCCGCCAGAGTGGATTCGCTTCCATAGATACCACGGGCGCTCGGCTACGATGTGGTCGCTAGGGGTGCTTCTGTATGACATGGTCTGTGGAGACATCCCCTTTGAGCAAGATGAGGAAATCCTCCAGGGGAGACTGTACTTCAGGAGGAGAGTGTCTAATGaGTGCCAGCAGCTGATCAAGTGGTGCCTGTCGTTACGGCCCTCAGATAGGCCTACTCTGGAACAGATCCTGGACCACCCTTGGATGCGCTTGGCTGGGGAAGTGTCGATATCCTCCAAGACGGAGGATGGGGACATCCGGCTGAGGACCATCAACACGGACATATCTAGCACAAGCTCCAGCAAGGAGAGCCTATgaaagaggggatgagaggaaaTAATGGACATGTTAACTGTACTTAAAGGGCTCTTATGCCCCACCATGGCTTGGGCAGgcagaaaacattttttttttgtatggaATTATTATAATTTATTACAGTTTGTTCTTCCTTTTGATCTTTTATTTTTATACCTCATTAATTGTTTCCTAATGTGGGACATTTGCTGTTTGGGGCGGTCTTTACCAGTGACTATTTATTTTGTACTTTTATTATTTTCTAATTTGTTATAACGGTGGGTTTATGCATCTGGTTTAAAGCCCCCTATTCAGACCGACATGGCTGCTCTCATAGAGCTAGGAGAATActttatttttaaacattttgattTGTAGTGCCTTTTTGAAAGCTGCTTCTCGGGGCTTTTGTCATAATTTTTGTTTCGTTATAACCCTTTCCGGCTGGTTTGTTTGTACGTATCCCACCCTGTCATGATGGAGATGAGTTGTCTTCTTCCATAACAGTGTGGTAAACTACACCACCCAGCATGCTTAGGGAtcataggagggggggggggatgtgttGACCATGGAATGCTTGAAACAACTCACTCACACTGCACCCCCTTACTAAGCTGCTCAATCATACTATAGCCTCAGTCATTTGTATTTCTCAAAATTGAATCCTTTCATTTCTGAATGTGTATTAAAACTACATATCTGTGTGTTTAGCCCCttggaaatgtattttatttaaatgtattgcCTTTCCCCCATCTCGTAGCTGGCACTATCACCTGCCCTGAACTGGTGTATCCATGGCTTAAGTGTGAAATGCACAATCAATGCAATATTCATGGGCTATTTTTCAATACAAATATTGTGcaggtttttttttcttcctatgCTTTTAATTTCTTCAGAACATGTAGACGTTCCACACTCTTGAagcttatttatttattgtcgATGTTTAAGAGTGAGAAATCCCAGAGTTTACATATCTTTACATGGCCTTTTGTTTTGCATTCCTGTAATTTTCTTTTACGCAATTTGTTTCGATTGTGGATGGATGCACTTAAGTTGTCTGAAGGGAATAAAACAAGGATTACATTTGGAAGAGCTATGAATGTTATttaacttaaaaaatatatatattatagtccTTTCTGTGGTAATGTTGGGTTGAATAGGGCTATTCTAGTTAGTGACTAATGTGGCTTGCCTAGTGTTAGATATTCTCTTTCAGTTTAGCTGTATGACATGAATGATAGAGATctggat

Function

NR:

description
serine/threonine-protein kinase pim-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577589.2 False 2664 mRNA 0.43 6 34372230 34376541
TU1982420 True 2217 TUCP 0.39 2 34372277 34374679
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110500289 LOC106609155 coding downstream 47186 34318272 ~ 34325044 (-)
LOC110500287 NA coding downstream 77033 34292066 ~ 34295197 (-)
LOC118936404 LOC106575995 coding downstream 79960 34288076 ~ 34292270 (-)
LOC110501068 LOC106575995 coding downstream 84230 34269811 ~ 34288000 (-)
LOC118942783 NA coding downstream 1067864 33300216 ~ 33304366 (-)
LOC110501069 LOC100306760 coding upstream 228821 34605362 ~ 34646912 (-)
LOC110500291 kdm5a coding upstream 284629 34661170 ~ 34737767 (-)
LOC110500294 NA coding upstream 386531 34763072 ~ 34766659 (-)
LOC118942799 LOC106575957 coding upstream 599669 34976210 ~ 34985602 (-)
LOC118942921 NA coding upstream 770211 35146752 ~ 35155262 (-)
G1730843 NA non-coding downstream 10996 34360975 ~ 34361234 (-)
G1730840 NA non-coding downstream 15793 34356045 ~ 34356437 (-)
G1730805 NA non-coding downstream 93425 34237987 ~ 34278805 (-)
G1730801 NA non-coding downstream 140228 34231775 ~ 34232002 (-)
G1730635 NA non-coding downstream 212936 34159045 ~ 34159294 (-)
G1731157 NA non-coding upstream 178167 34554708 ~ 34555814 (-)
G1731156 NA non-coding upstream 179330 34555871 ~ 34565175 (-)
G1731160 NA non-coding upstream 205759 34582300 ~ 34582635 (-)
G1731164 NA non-coding upstream 214145 34590686 ~ 34591232 (-)
G1731166 NA non-coding upstream 217029 34593570 ~ 34598713 (-)
G1730761 NA other downstream 42654 34325225 ~ 34329576 (-)
LOC110500269 LOC106609159 other downstream 1767600 32603262 ~ 32604698 (-)
LOC110500257 LOC106576032 other downstream 2102569 32254847 ~ 32269661 (-)
G1728665 NA other downstream 2203296 32167669 ~ 32168934 (-)
G1731328 LOC106609102 other upstream 396925 34773466 ~ 34773878 (-)
G1731917 NA other upstream 837176 35213717 ~ 35245060 (-)
G1731967 NA other upstream 914692 35291233 ~ 35291754 (-)
G1731966 NA other upstream 915935 35292476 ~ 35295430 (-)

Expression

LOC110500290(LOC106609105) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 100.
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LOC110500290(LOC106609105) Expression in each Bioproject

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LOC110500290(LOC106609105) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network