Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110500293 |
| gene name | LOC106609102 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 34766720 ~ 34782583 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| transcription intermediary factor 1-alpha-like |
| id | description |
|---|---|
| K08883 | TRIM33, TIF1G; tripartite motif-containing protein 33 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021577597.2 | True | 5850 | mRNA | 0.49 | 17 | 34766720 | 34782583 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC100135927 | LOC106609106 | coding | upstream | 437142 | 34325210 ~ 34329578 (+) |
| LOC110500288 | LOC106609107 | coding | upstream | 448923 | 34309099 ~ 34317797 (+) |
| LOC110500285 | fam19a5 | coding | upstream | 897704 | 33709461 ~ 33869016 (+) |
| LOC110500284 | LOC106609109 | coding | upstream | 1250732 | 33329927 ~ 33515988 (+) |
| LOC110500282 | LOC106609111 | coding | upstream | 1513197 | 33180674 ~ 33253523 (+) |
| LOC118942784 | NA | coding | downstream | 1830 | 34784413 ~ 34792564 (+) |
| LOC110501070 | wnt7b | coding | downstream | 135109 | 34917692 ~ 34931171 (+) |
| LOC110500295 | LOC106609100 | coding | downstream | 246676 | 35029259 ~ 35033416 (+) |
| LOC110500296 | LOC106609097 | coding | downstream | 288787 | 35071370 ~ 35267800 (+) |
| sh2d1ab | sh21a | coding | downstream | 721108 | 35503671 ~ 35510121 (+) |
| G1731250 | NA | non-coding | upstream | 4321 | 34762136 ~ 34762399 (+) |
| G1731245 | NA | non-coding | upstream | 10154 | 34756304 ~ 34756566 (+) |
| G1731045 | NA | non-coding | upstream | 110523 | 34655855 ~ 34656197 (+) |
| G1731044 | NA | non-coding | upstream | 112052 | 34654418 ~ 34654668 (+) |
| G1731016 | NA | non-coding | upstream | 158563 | 34606964 ~ 34608157 (+) |
| G1731353 | NA | non-coding | downstream | 16993 | 34799576 ~ 34799946 (+) |
| G1731373 | NA | non-coding | downstream | 37411 | 34819994 ~ 34820259 (+) |
| G1731545 | NA | non-coding | downstream | 183909 | 34966492 ~ 34966722 (+) |
| G1731601 | NA | non-coding | downstream | 201266 | 34983849 ~ 34984050 (+) |
| G1731605 | NA | non-coding | downstream | 206168 | 34988751 ~ 34989001 (+) |
| G1729465 | NA | other | upstream | 1444959 | 33321453 ~ 33321761 (+) |
| LOC110500252 | LOC106609149 | other | upstream | 2604328 | 32153116 ~ 32162456 (+) |
| LOC110501063 | LOC106609150 | other | upstream | 2630024 | 32114413 ~ 32144886 (+) |
| G1727220 | NA | other | upstream | 3202126 | 31564135 ~ 31564594 (+) |
| G1732028 | NA | other | downstream | 656706 | 35439289 ~ 35484354 (+) |
| G1732735 | NA | other | downstream | 1258748 | 36041331 ~ 36042488 (+) |
| LOC110500325 | ppp2r5b | other | downstream | 1450539 | 36189389 ~ 36237829 (+) |
| G1733187 | NA | other | downstream | 1974406 | 36756989 ~ 36760221 (+) |
| zgc:109889 | LOC100194703 | other | downstream | 2466044 | 37248296 ~ 37314293 (+) |
