LOC110500293 (LOC106609102)


Basic Information

Item Value
gene id LOC110500293
gene name LOC106609102
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34766720 ~ 34782583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577597.2
gttttttttgggggAAAGAATGTTGCTTGTACAGATGGTAGCTAGCAATTTCCATTGATAGAAGTTTGTATTGCACGTTTATTGTACAAAATTACTATTCGGTGTCCTCTACTATTGTTCAGTTTCATTGACACTAGGCAGCTATTTAATAACTAAATTACGTCATCCTTCGTGGTAGCAACTGTGtcatctagctaacgttagccatctaGCTTCCCAACCGCAGAGTTTAGCACTTTCAATTTGTGATTGTATACTAATGTTGGCCAAACCTGCCATTACTGTGTTTAATTTCGGGAGGTAGTATTATGTAGGAACCATGAACTTTGCTCAAGCAAGGCATATATGCCCAACTGATTTCGACTGtaacagactgcagagagactagctaacattagctagtatccgctagctagctaacagtgacTGGTTTCCAAGCACTCAAGTCCATCTTGAATAGGCACAAAGCAACAACAGAGACAATGGATGAGAGCCCAGAAGCTGCTGTGGACAACGATGACCTTGTTATTATAGTGGAAAACGAGGCAGAGAGCTTGCCAGTTGAAGAGGAGAGGGCGAAACAGCTAGGAGGTAGCATCGGTCTCATGGACACTTGCCCTGTCTGTAAGTTGAATTTCCACAATCGAGAGCCGAAACTTCTGCCATGCCTCCACTCTTTCTGCAAGAAGTGTCTTCCACCCCCTTCAAGGAACTTAGTCAACACTGAACAACGTCGCGACCCGCAACTTCAAGCGGACAACTCGAAACCACTCAATGTGATCCGCTGCCCAGTTTGTCGACAAGAGTGCTGGGAGGTGGAGGTGCTGGATAACTTCTTTGTGAAGGACTCTGTGGAGGTTCCCAGCAGCACAGTGGAGAAAACCAGTCAGGTGTGTATGAGTTGTGATGACAACACCGAGGCCACAGGGTTctgtgtggagtgtgtggagtTCCTGTGTGTGACGTGTATTGAGGCCCACCAGAGGGTCAAGTTCACCAGGGATCATACTATACGGCAGAAGGAAGAGATGTCCCCAGAGGCTGTGGGTGCGTCCTCACAGAAGCCAGTGTTCTGTGACATCCACAAGCAGGAGCCCCTCAAACTGTTCTGTGAGACCTGTGACCGTCTCACATGCAGGGACTGTCAGCTGCTCAAGCACAAAGACCACAATTACCAGTTCCTTGAAGACGCCTACAGAAACCACAGGCAACACCTGGAAAACATGACGCATCagctacaggagaagaggaaAGCCATAGAAGAAGTGTCCAATTGCATCAACAATGGACTCCAGCAAGTCGATGAAAACCGCAAGTCTGTCACCAATGAGATAAAGAAGTCAATTTGCAACTTGATCATGGAGATCAACAGAAAGGGAAAAATCTTGGTCAATCAACTTGAGACACTGACGAAGGACCATGAGGTCGGACTAAAGAAACAACAAGAAGATGTCAGCCACCTGACCAGACATCTAGATCACGTCATCAACTTCACCAAGTGGGCCACAGCCAGTCACAGTGGCACAGCTCTCCTGTACTGCAAGAGACTGATTCTTTGCCAAATCCATTACCTAATGAGGGCCAACTGTAACGCATCCATCGTCCCTCAGAGCTCAGTCCGCTTCCAGTGTCGCTCCGGTTTCTGGGCCTCAAATGTCGATCTCGGGTCTTTGGCAGTAGAGAGAATCCCTGGTCGGCAGCCCAGTTCCATGCAGCAGGGCTTCCCTCCTGGCCACCCCAGCCAGCCTGGCCCTGGCCCCAGAGGAGAGGGCCCTCCCGGGGCTTTCCCTCCAGGCTCCTCCGCACACCAGCGTGGGAGCACCCTGGCTCAGCTCCAGCTGCAGGTAGAGAAGCTTGCCCAGCACCCCAACAGGGCTGGACAGCCCCCTCCCAACCACTGGTCCTGGTACCAGCAGGGTCTGAAGCTCCCGGGGCCAGGGGGCCCCCCTCCACAGAGGCCCCACCAGGGGGGTTCTCCGTCGCAAGGTCCCCCCAACATGGTCCAGATCCAACAGCCGGGCCGGAGTTACGGACCCCCCGGGCCCCAAACCCATCCCAACCCCAGGAgccccacctctatgctgcaaaACGCAGGATTCCCTCCTCAGTCTCTGAGGGATCTCATCCACAACTCCAGCTTTCCTCCCAAACCAATGGATGTGTTACAGGGTACCTCTCGCTACTCTCATGCACCCCCTCCCAACACAGGACCCATCAGCACTCAAGCCTCTATACACCAGCGTAACATGATGGAAGCCGCACAACTGAGGAGGAGTGACCCCAGTGGAGCTTCATCATCATTATCCATGCCCAACCCCAGAGCTAGTTATGCTCCGAGCCTAGCTACTGCCTTCCCAGACAGACATGcaCAAGGAAGACAGAATTCCCCCATGTCCAAATCTTCCTCTGAAACCAACATAGGGTCTGCTTCCTGGAAGCGCACAGAGCCTAATGCGGTGGCTCCCCCCTCCTCAGCTAAGCGGAGGCGAAGGTCATCCCCCGGACCAATCATCGTCATCAAGGACGAACCAGAGGACGATGACGAAGTCAGCTTTGTGCAGTCTAGTGTTGGAGCCTCAGCCAGCCTGCCAGACAGCAGTACAGGCATCCAGCCCAAGCCCCAGCCCCAGCAGCAATCTCTCCCAGCACCCATGGTGGAGCCCCAGCCGGAGCCCCAGCCGGAGCCCCAGCCCCAGCCGGAGCCCCAGCCCCAGCCGGAGCCCCAGCCGGAGCCCCAGCCAGAGACCCAGCCAGAGACCCAGGTAGAGCTAGAGGCAGACCCCCAACCAGACCCAGAAAAGGCCCCATGTGTCCCTGAAGACGACCCCAATGAAGACTGGTGCGCTGTGTGTCAGAATGGGGGAGAACTGCTCTGCTGTGACCGATGTCCCAAAGTCTTCCATCTGAACTGTCATATACCTACACTTAGAGAGTCTCCCAGTGGTGAGTGGTTCTGTTCGTTCTGTCGTGACCTGACCAGTCCTGAGATGGAGTATAACCCAGATAGCCAGGTAGAATTGCCAGCCATGAAGGAGGAGCCAGGATCAGAGGGATTCCCTCCAGTTGATAAAAGGAAATGTGAGAGACTGTTGCTCTGCATCTACTGCAACGAGTTCAGTACAGATTTCCAGGAGCCTGCCTCACCGTCGTCAATCCCAGAGTATAAGGAGCTGATTGAGACTCCAATGGACCTGTCCATAGTGAAGAGCAGGCTGGAATCTAAGGAGAGCCCGCGTTACTGCAGTGCTGAGGAGTTTGTCAAGGATGTCAGGCTCATATTCAGGAACTGTGCAAAGTATTACCAGGCAGACACTGAGGTGGGAGGTGCAGGACTGAGCCTGGAGGAGTACTTTGAGGAGCAGCTGAAGTTCCTCTACCAAGACAGGAGCTTCCCTGGGGGCAGAGAGGAGGGCATGATACCCCCTGTGGAGGACGAGATGGAAGAAGGGATGGAAGACGATGGGATGGCTCCTAACGAAGGGGATATGCCCCCTGTTGAGGACGACCTAACACCTGTTGAAGAAGGGATGCCTTCTATGGAGAAAGAAGGAACTGAAGAGGGGATGGATCTtgtggaaggagagatggaggaagaagggATACCTCCTTTAGAAGAGAGCATGGAAGAGGAAGAGACTTCTCCAGTGAAAGAAGACTCACTACCTTGTGATGCTACTGAACCAGTAGATCCATCAATAAGGGGTGCATCATCTCCCAACCTTTCCAGCAAGGAGGCTCCCCAACCCCTCTCAGATACTCCAGACAACCCTCCCTGCGAGGaggccccccaacccctctcGGATACCCCAGACAACCCTCCTGACTCCCAGGGCACCAGCACTGCTGACTCCCAGGACACCAGCCCTGCTGCAGGCTTAGCCACAGAAAATGAGGGGATGACTGAAGAAGTGAGAGACAAAGCAGAAGAGGAATGATTCTTGTTCTTCCACTGTAAATTGGACGGACGATAAAGCTTTTTGAATTATCTATAGGATCTGTTGTCTGAAAATACAGGGAGACCTCTTTGCTGCATCATACACGTTCTGATATGATTtgcaataataataaataaaacagaGAAACCCGGGATGTATAACGGGGTACAGAGATGGACAATGAATGCACAAATGTTTGTCTTGTTACAAAGCAATGTAGCTACATGTATGAACTAATAATGCACAGACTGTTCTGTCTGCTGAGATTGAGAAGTTAGTCATGGTGTAACTGATTAACTTTCTACAATAACAATCATAAAACACAAGTAATGTCCATTATTGATAAGTTGTCTGCAATTTTCCATGTTGGCTTTTGTAAAGATGAATGccatataatactgtatatttataaTAATGTAAGTTTATTTATCCAACTCTAAAGGAAAAATAGCTGCAAAGACCGAACTACATGAAAACCATAGCCCTACATCATATCTTAACTCTGGTCAATTATTTTTAACAGACATTTTTATGTGTAGTTGTGTTTGTGTTATAATTTAGTTAAATTATAGGCTACTCTTGTACAGAATTTTTGTGAAGGAGGTATTCTGAAAGGTAGACTCGGCGATATAACAGATGCAAAAAGTAAACTGCATCGAGGGTCAATTTCAGCGACAACAAAGGGCGTGAGGCtcaacttctctgctgttttggtgCCCTGGCTACCGTGAAGCCAACTGTGCACATGAGCAGATACTGTGTGAGGGCGAAGCCTAGCATCTACTCATCTCAATATCTGATGTGCTGCTGGTGGCAATGTCATTTCGCAAAGTCTACCTTTAAGACTGTTCACTAGATTACAGGGATGcaaaatgtaaatatttttttcagAATGAACGTGCAGTGTTCTCGAATGGTGCTGCTTGCTTTTTGGCATGTAAAGAGAACCAAACTGTTCCCCTCACTTTTCCTTGTTGCATGTTTTCTTGTTGCCTGGCTACCCTGACTTGGTCTGCCGAACACTACGCCACACCCACGGACGTTAATTTCTTCTCCACTATCAATCTGGATCTAAGTACCTCCCCAACCCTTCACCGAATGCGAACACATTCGGGGCCGTCTGATTGGTCCCGAgaccgatgggttgggccagagccagttAGAAAATGTGTAATTgactttgatactctgattggttagagatcaTCCAATCGATGaagactttgttttgtacaacgccCCTCATCCCCACCACAAGACTTCAATAGATGCTGTAAAGAGGTCACTGGAAAGCAGACTGGGGGGGATAGAAGAAGGATACCAGGTTGGTGCccattcaacaaatctgatctaacaaagtggatattcgTCAAATCTgtcatgattgatgtattgtaacaggcccacTGGTTACTAAAGTCTGATTTGGCTGTTTTCGCTGCATAACGTTTAGAAGTAGTCCTTTTTCAGGTTTAGAcgtgactgctaaatgctaactcctgTTGGTATAAGCTGGTAGCATACAATAAAACTTTAATTAAACACTGAGTCTCAAATAGCCGCTTGTCCGTTTTAATAGCCGGGTAATGGCCcacatttcagcaaataaatGTCCCTTTCAAATAAATGCAGGGTCTACATGAATTGTTAATAGAGGTTACCAGGAATTTCCAAAAACAGTCAACTTCCGGAGTACAGACCCCCAGAAATCAGCCGATCGCCTTCTAGTGACGAAAGTAAGAACCGCCGGAAATGCACAGTCAGAGGAGAATGATGCTTttgtaaataaaatgtttttaaaatatattttttaacaggCATACTAAGACAAAAGTAAATGATAACACAGTTGTAGGAAAtgggaaaatgtattaaaatgatgGAAGTGAATTCTGGAATTAAACAAATATTCAAA

Function

NR:

description
transcription intermediary factor 1-alpha-like

GO: NA

KEGG:

id description
K08883 TRIM33, TIF1G; tripartite motif-containing protein 33

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577597.2 True 5850 mRNA 0.49 17 34766720 34782583

Neighbor

gene id symbol gene type direction distance location
LOC100135927 LOC106609106 coding upstream 437142 34325210 ~ 34329578 (+)
LOC110500288 LOC106609107 coding upstream 448923 34309099 ~ 34317797 (+)
LOC110500285 fam19a5 coding upstream 897704 33709461 ~ 33869016 (+)
LOC110500284 LOC106609109 coding upstream 1250732 33329927 ~ 33515988 (+)
LOC110500282 LOC106609111 coding upstream 1513197 33180674 ~ 33253523 (+)
LOC118942784 NA coding downstream 1830 34784413 ~ 34792564 (+)
LOC110501070 wnt7b coding downstream 135109 34917692 ~ 34931171 (+)
LOC110500295 LOC106609100 coding downstream 246676 35029259 ~ 35033416 (+)
LOC110500296 LOC106609097 coding downstream 288787 35071370 ~ 35267800 (+)
sh2d1ab sh21a coding downstream 721108 35503671 ~ 35510121 (+)
G1731250 NA non-coding upstream 4321 34762136 ~ 34762399 (+)
G1731245 NA non-coding upstream 10154 34756304 ~ 34756566 (+)
G1731045 NA non-coding upstream 110523 34655855 ~ 34656197 (+)
G1731044 NA non-coding upstream 112052 34654418 ~ 34654668 (+)
G1731016 NA non-coding upstream 158563 34606964 ~ 34608157 (+)
G1731353 NA non-coding downstream 16993 34799576 ~ 34799946 (+)
G1731373 NA non-coding downstream 37411 34819994 ~ 34820259 (+)
G1731545 NA non-coding downstream 183909 34966492 ~ 34966722 (+)
G1731601 NA non-coding downstream 201266 34983849 ~ 34984050 (+)
G1731605 NA non-coding downstream 206168 34988751 ~ 34989001 (+)
G1729465 NA other upstream 1444959 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 2604328 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 2630024 32114413 ~ 32144886 (+)
G1727220 NA other upstream 3202126 31564135 ~ 31564594 (+)
G1732028 NA other downstream 656706 35439289 ~ 35484354 (+)
G1732735 NA other downstream 1258748 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 1450539 36189389 ~ 36237829 (+)
G1733187 NA other downstream 1974406 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 2466044 37248296 ~ 37314293 (+)

Expression


Co-expression Network