LOC110500295 (LOC106609100)


Basic Information

Item Value
gene id LOC110500295
gene name LOC106609100
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35029259 ~ 35033416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577598.2
CTGCGgtgccgctttgtggacaacgactcccattgtggCGGAGAAACATGTttcttgtcagtatatccatcAACTTTGGTACAGCACAGACGATTTAGCTCCGTAGTCAAACGGCAGAAAACAACCAACAGAACTAAGCTTTCAATATTCGGGCAGATTGTTTTTTGCTTGGAGGGGGAATCACGTTGGCTGTTTTACGGATGTTATGCATGCGTCTCTAACTTGTGTTTCAGGTCGCTTATTTAAAAGGAATACTTGTTTTTTTTATGGTAAACTGTCGCGATTTATGGTTTTCATCATTCATATTTCATATGTGCAACAACATGTCAAATGTTAGTCTTTCGAATGGGAGTCCGACGTTGGAAATGGTGGATCCGCGTCCGACGAATCACACGAAGACCCCGATTCGCAGAAATCTTTTCGGATCGGTAGATCACGACGACTTTAGGAGGGAGTGTTTGGTTCAAATGGAAGAGATGGAGAAGGCTTATATTGACAAATGGAATTATGATTTCCAAAACGACAAGCCCCTTTCCCAGGGAGATTATAAATGGGAACCCATGAAAAGCAGTGACCTGCCTGACTTTTACACCAGACCGCCTCACAAGCGAGTCTTGTCATCTGGAAATGTGGACCATAACGGGAATCATGATTACCGAGTCGGACCGAGCTGTCTTACGAACGGGGCTGAGCTATCCGAGGAGACTAAGAGCGAGAGTCAGACGCATTGTCACCACTTTCACAACCGGGCAAGGAAAATACCTGCAAATCCAGAACCCCAAAGTACTGGTAAAAAGTCACATTCCAGTGAAGAGGATGAAGTGGTGTCAAAGTCAGTAGAGCAGACACCCAGCAAAAACGATTCCAGGACACATGAACACTAATACCAAGCGCTGAGAAGTCCTCCTTTTTCATTGAATACTGTACTTCAGGACCTTAAGAAGAtaagagggaaagaagagaagaCAGGATACAAAATGGCCTGCctttaggagggagggaggctgtgcAAGCACTGAATATATACACTAAAGTTTTGGCACTCAATTGAATCCTATCGCCTCAAAAGCAGAAAATGTAGCAGTGTGCAAAATTGGATGTTTTTCCCTTTTTGCTCAGTTTTATTTTAACTACCTATGTTTCATATGTAGCACATAAAACATAATATTATTATGTTAATACAATAAGTGTCTTGAAGAATTGCTGTGCAGTTctcaaaaaaaatattgtttgttTGTAAAAGTGGTCATATGATATCCTTGTTCAGAAATAATTGATAGTTATaaatggggcagcagggtagcctagtggttagagcattggactagtaaccgaaatcccagagctgacaaggtaaaaatctgtcattctgcccctgaacaggcagttaacccactgttcctatgccatcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaagaaAATTCTGATTATTTCTAAGTCACTGTTTTTGAGAGTATCTCATCAAAGAATCAGTTGTTTCTATTTTGTGGctttattcagtgttcagtgctagTACATAGTTTGAAGGCCTATTATTCTGGTAATCAggggtcaattctatttcaattgATGAAGTAAACTGAAAGTCATTCCAATTTTCCTCAATGTTTTTCAATGACAGAAAAtattgggatttttttttaacttcCTGAGTTGACTGAATTTGAATGTAATTGACCCAATGCTACACTAAGGTCATACTGTCAATCAGTATGTTACATGACCTAACTAGATACAAGTTTACATGcaaataatatattattattatttttattaagtGTTCCTACTGCGAAAGGGAAAGATCCTGCCAAAGTTTCAACATTTGTCTTATTTTATGGATAAATAATTAAATGATTAGGCCTTATTCATGGCATAGTTAGAAATTATTGGTTAAAGTTTGAAAATATAGTTCCCATTTTTaagtattaattattattattatgcccCCTAAAATTAGTTGGTTTCCTTTAACTTATTCATAATGTGGTCCAGTTTGACCCAGAGTAGCCTACACTCAGATGTGTTTTGTAACCCCTGGGCACTTTTCAAACATAAATATGTGAATCAACGATTTGCCTCTTATTGTGTGTTGACTTCATATTGAGCATGACATGGCACTATATAGACCACACAAAGGAAATAATTATCATCTttgaggaagacagacagataaaAGACAAAGCTATACTGCATGTACAGTGTGTCTGTATAAAACTTTGAAGTGTACCTGTGTATTTTTCCTTGTAAAAATTATAGTAACGTatttttcttcaggtttttgtgGTTGAATTGATATCCAAAGTGACATTTTTTGAGCATTGTTATGTAAATAccttaaaaaatgtttttggatAGAAAAGGTTGCACAACTGAGCCTGGTTAAAAATATACCTGTATATTTTGTATTGTGTCTCTGAAACCAGCAGTCATTTGATAAAAAAAACTATATTGGTTTAAATAAAAAGTTATTTATTAATTATTTTCATAATTGCGTATTATGTGCACATTCATTTTCCTCCATATGTCAACATTGTCACAGTATGCTATACATTCAGGCTATAGTGTGCCAGGGCCAACCTCGGCAGTAGGCTAGTAAAGGTATTAGTTATGAGATATGGTTGATAATGTGTAAAAACACACGTCTAGACTAGTCACCCAGAAATTATTGTTGTGCAGCAGGACTTGAGAGCAACGACTAGTTGCAACTTTTTTATCTATGCATAATGCTACAGTTGAAAAAATGCATGATGTTACTGTCAcaacttccaccgaagttggctcccttgcctgttcgggcggtgcttggCAGTCGttgtcaccgtcctactagccgctaccgatccctttttcatttgtctgtttgttttgtcttattagtttcacctgtgtgtattttcgtttaattagcttccctatatgtagtaggttgacccgcccttgttttgtgcgggattgtcttttGTTACGTGTGTACATATTAGGTCGTggtgtattttattttctatactgGACACCCTGTGGTTTTGGGTTGTCTGGTATAGTGTCCTGTGCCCTGTATTGTATTGGGCTTATCAGTTTGGTGTGCAATAGTAAAGCACTTTACTCCGtta

Function

NR:

description
cyclin-dependent kinase inhibitor 1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577598.2 True 3160 mRNA 0.38 3 35029259 35033416

Neighbor

gene id symbol gene type direction distance location
LOC110501070 wnt7b coding upstream 98088 34917692 ~ 34931171 (+)
LOC118942784 NA coding upstream 236695 34784413 ~ 34792564 (+)
LOC110500293 LOC106609102 coding upstream 246676 34766720 ~ 34782583 (+)
LOC100135927 LOC106609106 coding upstream 699681 34325210 ~ 34329578 (+)
LOC110500288 LOC106609107 coding upstream 711462 34309099 ~ 34317797 (+)
LOC110500296 LOC106609097 coding downstream 37954 35071370 ~ 35267800 (+)
sh2d1ab sh21a coding downstream 470275 35503671 ~ 35510121 (+)
LOC118942786 NA coding downstream 603171 35636587 ~ 35637138 (+)
LOC110500322 LOC106609072 coding downstream 755075 35788491 ~ 35982905 (+)
sepsecs sepsecs coding downstream 966405 35999821 ~ 36039069 (+)
G1731605 NA non-coding upstream 40258 34988751 ~ 34989001 (+)
G1731601 NA non-coding upstream 45209 34983849 ~ 34984050 (+)
G1731545 NA non-coding upstream 62537 34966492 ~ 34966722 (+)
G1731373 NA non-coding upstream 209000 34819994 ~ 34820259 (+)
G1731353 NA non-coding upstream 229313 34799576 ~ 34799946 (+)
G1731599 NA non-coding downstream 237641 35271057 ~ 35271595 (+)
G1731754 NA non-coding downstream 239792 35273208 ~ 35273445 (+)
G1731755 NA non-coding downstream 240209 35273625 ~ 35273884 (+)
G1731757 NA non-coding downstream 244422 35277838 ~ 35278261 (+)
G1731748 NA non-coding downstream 255435 35288851 ~ 35289535 (+)
LOC110500285 fam19a5 other upstream 1160282 33709461 ~ 33869016 (+)
G1729465 NA other upstream 1707498 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 2866867 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 2892563 32114413 ~ 32144886 (+)
G1727220 NA other upstream 3464665 31564135 ~ 31564594 (+)
G1732028 NA other downstream 405873 35439289 ~ 35484354 (+)
G1732735 NA other downstream 1007915 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 1199706 36189389 ~ 36237829 (+)
G1733187 NA other downstream 1723573 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 2215211 37248296 ~ 37314293 (+)

Expression


Co-expression Network