LOC110500296 (LOC106609097)


Basic Information

Item Value
gene id LOC110500296
gene name LOC106609097
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35071370 ~ 35267800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577600.2
TCCTCTCCATGCACGAGTCCGTGCTGCGCCTGATGCAGTGGCTTGTGGATTCGATCTCTCTCAGGTTACGGAGGAGTTAGAGAAAGACCAGTTTAATGGAATATTTTCAGTAAACGCAAGAAAGCGAAAACTAGGTACAAGATTCACTTCATTTACAGAGATTGTATGTAGCCGAATATAACTCTTGGAGCCGTGGAATAGCTGCGACAGAGACAGGGTTTGTGGCATTCATTGAAAAAACAGACCTTTAGTATGCAATGCAGCCATGACAGGCAAGAGTAAGACAGCTGTGAGGACGCTGGAGGATTTAACGCTCGATTCCGGTTATGGTGGAGCCGCTGACTCCTTCAGGTCTTCCAGTGTGTCGCTGTGTTGTTCGGACACGAATCTGTCATATGCGCATGGGGGAAACTGCTGGCATCTGACTGAATCTATGCACAGCCGACACAACAGCTTGGACACGGTCAACACCGTCCTGGCGGAGGACACGGATATATTGGAGTTCTCCAGCCAATGCGCCAAGCTTCCCGAGCTGGAGGACGTGCCATGGAGCCTCAGCGAGGTGGAGTGTGCACTCAGGAAGAAAGAGGAGCTATGTGTCGGGAGCCCGTCACAAGAGGTCCTGGCCAAGCTCTCAGCACTGGTCAGTCGGGCGTTGGTGAGGGTCGCCCGGGAGGCTCAGCGCCTCAGTCTGCGCTATGCCAAGTGCACCAAGCACGAGATCCAAAGCGCCATCAAGATGGTTCTCTCCTGGACCATCTCTGTCAACTGCATCACCGCAGCACTCGGTGCACTTTCGCTCTATAATATGAGCACTAGGGATAAATTATACCGGGGCAAGTCAGCGCGGTGCGGGCTCGTCTTTTCTGTAGGACATTTTTTCAAGTGGATGGTTGAGAATCGAGTGGCACTCCGGGTCCATGAGCACGCGGCTATATACTTCACTGCCTGTGTGGAAAGCCTGTTCCTTGAGGTATTCAGCCGAGTGCAGCGGAGCGCGCTCATCGAGAATGACAACGGTACCTCCACATTTACGCTTGAGTCCCTAGAGCAGGCCATCAACAATGACTCAGAGATCTGGGGTCTGCTGCAGCCCAACCAGCACCTCATATGTGGGAAGAATGCAACTGGTGTGCTGAGCTTGCCGGACAATCTGACCCTGCACCGGAACCAGCAGGGCTCTGGGAAGGGTGGCAAGGGCAATGCCAACAATCAGGCTGAACTCCGCAACCTGGAACAGTCCCTACTAGCTACCCGTGTGGGAAGCATTGCAGAGCTCAGTGATTTGGTGTCACGGGCCATGCACCATCTCCAGCCATTGCGCATTAAGAACCCTAGCAACGGCATGCCAGTTCACCAGAAGAGCGGCACGGTGCACTGGGAGCCTGAGGCACTCTACACTCTCTGCTACTTCATGCAATGTCCCCAGATAGAGTGGGATAACCCCAACTTGGAGCCCTCCAAAGTCACCCTGCAGATCGAGAGGCCCTTCCTTTTACTGCCACCGCTGATGGAGTGGATTCGGGTGGCAGTggcacacacagaacacaggcGCAGCTTCTCTGTGGACAGCGATGACGTGAGACAAGCTGCCAGGTTGCTCCTGCCAGGGGTGGACTGTGAGCCACGGCAGCTAAAGGCAGACGATTGCATCTTTGCCAACCGGAAGCTTGATGCGGCGTCCACAGAGGCTAAGTTTCTGCAGGACCTGGGTTTCCGCATGCTCAACTGTGGCCGGACAGACCTCGTGAAACAGGCGGCCAACCTACTGGGGCCTGATGGTATCAACAGCATGAGCGAGCAGGGGATGACACCACTCATGTATGCCTGTGTGCGGGGAGACGAGGCCATGGTTAAGATGCTGCTGGACACTGGGGCCGACATCAACAGTGAGTTGCTCCTGGATAGTCGAGACAGCATGGAGGGGGCCCTGCCAGATGGAGCAGATAACTACACTGAGACCCCACTTCAGCTGGCCTCTGCTGCAGGGAACtttgagctggtcagtctatTGTTGGAGAGAGGGGCAGATCCCATGACTGGGACCATGATCAGAAATGGCATCTCATCTGCCCAACTGGGGGACATGAACTCATATAGCCTGGCAGCATCACATGggcacagAAATGTATTCCGGAAGCTTCTGTCTcatggagagaaagaaaaggatgACTTCCTCTCCCTGGAGGAGATCCTGGCCAAGAGCTCGGTGCCCGGGGAGAAGAAACCTCCCCAGGCCGTCGGGACCCTCCAACGAACAGGAAAGGCCAAACTGAGGGCCCTGAGAGAGGCCATGTACCATAGCACTGAGCACGGCCATGTGGACATCACCATAGACATCCGCAGTTTAGGTGTCCCCTGGACCCTGCACACTTGGCTGGAGTCTCTGCGCACCTGTTTCCTGCAGCACCGGCGCCCACTGATCCAGGGTCTGCTCAAGGACTTCAGCTGCATCCAGGAGGAAGAGTACACTGCGGAGCTCATCACCCATGGCCTGCCACTTATGTTCCAGATCCTCCATGCCAGCAAGAATGAGGTGATCAGCCAGCTGTCTGTGATTTTCTCCCAGTGCTATGGGCCCTTCCCTATCCCCAAACTCACTGAGATCAGGAGGAAGCAGACCTCGAGACTTGACCCCCACTTCCTCAACAACAAGGAGATGTCTGATGTAACATTTCTGGTGGAAGAAAAACCCTTCTATGCACATAAAGTCCTGTTATTTACTGCTTCAGCCAGGTTTAAATCCCTGCTCCAAAACAGACCAGCAGCAGAGAACACCTACATTGAGATCAGTCATGTCAAGTACAACATATTCCAGTTGGTCATGCAGTACCTGTATTGTGGAGGCACTGAGTCCTTGCACATCATGAATACTGAGATTATGGAGCTTCTGTCTGCAGCAAAATTCTTTCAACTAGAGGCCCTTCAACGACACTGTGAGATTATCTGCTCCAAGAACATTGCCGTGGAAACCTGTGTAGACATCTACAAACACGCTAAGTTCCTCTGTGCCAATGAGCTGGCGGTCTTCATCGAAGGCTACTTCCTGAAGAACATGGTGCTGCTGATTGAGGTGGAGGCTTTCAAACAACTACTGTACGAGATGCCTGTTACTGTGAGCCCCGGACCCTGCCTGAGCCCCATCTCCGATGTCCTCCATGACCTGGAGAAAACTCTAGCCACCCGCATCCAGTCaattcacctctcctcctccaagGGCTCCATTGTGTGACCTCTCTGGGTTATTTAAACACACTTACAATCACCCAGTAATGTTACTGCAACATCCACTACCCCAGTTCATTCACCTGTCCCCTGATGTTAACATTTTCATAACATCCCTTTAATGTTACTGCTATTTCAAACCCTGTCCATCTACCTGTCCACGCTAGGGAGTGCTGTTGGTTTATGTGACAGGTCTGGGTGCTTACGCTTCACAACATTGCTGCAGAGTTACACTGCAGCGTCCAGCCATCTGACAGCTCCATTGTCTTCTCTTTGTTACAGGTTTGAACATTGTTGTAATACTCCTCTAACGTCACTGCACCATCGAATACATAAaggaaatataaaaaaaaaaatgtatgacttGTTACAGGCATATAATATGCCCATGATAATAAAATTTACAATTGTATTTCATATGAGATGCATACGTAGAATAGGTCCCTTTTGCTGAAAGAGTGGAATAACTTGTAGAATAAAAACTCTACTTTGAAAAATGAACTCATTCAGTGGTTAGTATCTGGTATGAGAGTTTACTTGGCTTTGTAATATTTTTGTTTGTATAATTGGGATGCAAATCTGTTTGGTGACAGAGCAGGTGACTAAAGTAAAGGAAAAAATGTCAAACTTTAACTTTAACTAAACCAACCACAAAAAGTTCACTGTAAAAAAAATCTGGTTGTTTTTATGGTAACTTAGTGGCAGCCAgttactgtaaaaaaaagacacagtatgttactgtaaatTCCAAAGAAACTTTGGTTTAACAGTATATTACTTTACATTTCAATAATGTACTGTTAAATCaaagttttttttacattaacGGAAAGTTACCATAAGTTGTTTTTAAGTTACAATAAAAacaacattatttttttaaagtgtatTCTTTGGAAGTGCATTGTAGCAATGATTTCAGAGTGATTTGAGAATGTAAACACATATGCCAACTCATTATCTTCATGTGTGGGACAGCATCTCACTCAGTCGTCGATAAAGCTGATGGAACATTTACAGAACTGACTAATACTTCAGTGCTCCTTGAACTGTACTCCCAACAATCATTATCCATTTATGCTTGAAACATGGATGTTCAACTTAGACCAAACTTATGATATATTTATAAACCATGTCAATAATTTGCATGACACCTCTCAACTGTACTACCCTACTGTTGCATTTCAGCAGAGCCAACCTCATAGACTACTTTGGAGGGAAGTGAAGAGTTTTCTAGCTATGACGAGTCAGACTCATACTGGCACTCTCGAGAAGGAAGGGTCTTCATGCTGTAATTGTGGGAAACAAGGTAAATATGTAATGAAAGTCAATTCTGTTGGTTGTTCTTTCTACAaactaatgtacagtatatttaatTCACCTA

Function

NR:

description
ankyrin repeat and BTB/POZ domain-containing protein BTBD11-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577600.2 True 4609 mRNA 0.48 16 35071370 35267800

Neighbor

gene id symbol gene type direction distance location
LOC110500295 LOC106609100 coding upstream 37954 35029259 ~ 35033416 (+)
LOC110501070 wnt7b coding upstream 140199 34917692 ~ 34931171 (+)
LOC118942784 NA coding upstream 278806 34784413 ~ 34792564 (+)
LOC110500293 LOC106609102 coding upstream 288787 34766720 ~ 34782583 (+)
LOC100135927 LOC106609106 coding upstream 741792 34325210 ~ 34329578 (+)
sh2d1ab sh21a coding downstream 235891 35503671 ~ 35510121 (+)
LOC118942786 NA coding downstream 368787 35636587 ~ 35637138 (+)
LOC110500322 LOC106609072 coding downstream 520691 35788491 ~ 35982905 (+)
sepsecs sepsecs coding downstream 732021 35999821 ~ 36039069 (+)
lgi2a LOC106609075 coding downstream 790316 36058116 ~ 36094464 (+)
G1731605 NA non-coding upstream 82369 34988751 ~ 34989001 (+)
G1731601 NA non-coding upstream 87320 34983849 ~ 34984050 (+)
G1731545 NA non-coding upstream 104648 34966492 ~ 34966722 (+)
G1731373 NA non-coding upstream 251111 34819994 ~ 34820259 (+)
G1731353 NA non-coding upstream 271424 34799576 ~ 34799946 (+)
G1731599 NA non-coding downstream 3257 35271057 ~ 35271595 (+)
G1731754 NA non-coding downstream 5408 35273208 ~ 35273445 (+)
G1731755 NA non-coding downstream 5825 35273625 ~ 35273884 (+)
G1731757 NA non-coding downstream 10038 35277838 ~ 35278261 (+)
G1731748 NA non-coding downstream 21051 35288851 ~ 35289535 (+)
LOC110500285 fam19a5 other upstream 1202393 33709461 ~ 33869016 (+)
G1729465 NA other upstream 1749609 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 2908978 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 2934674 32114413 ~ 32144886 (+)
G1727220 NA other upstream 3506776 31564135 ~ 31564594 (+)
G1732028 NA other downstream 171489 35439289 ~ 35484354 (+)
G1732735 NA other downstream 773531 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 965322 36189389 ~ 36237829 (+)
G1733187 NA other downstream 1489189 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 1980827 37248296 ~ 37314293 (+)

Expression


Co-expression Network