sh2d1ab (sh21a)


Basic Information

Item Value
gene id sh2d1ab
gene name sh21a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35503671 ~ 35510121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165066.2
ACACATTACAGACATTACAGAAAGAGAGGTGTCAGCTGGTGTTCTGAGCTTGGTTTTAGGAGGCTGAAAGTCGACTATTGAGAGGATAGTGTtagcagtatagtagtgtggAGTGGTCCACAGCCATGGAACAGGAAAAACTAGCCGTGTACCACGGAGCCATcagcagagaggagggggagatgaggcTGTGGACAGCAGGACGGGACGGCAGCTACCTGATACGCAACAGTGAGAGTCTAGCTGGGCTCTACTGCCTCTGTGTGCTgtATAAAGGCTATGTGTACACATATAGGCTGTCCCTGGATGATGGAGGCTCCTGGACAGCAGAGaCTACTCCCGGTGTGGAGAAACGATACTTTCGGAAAATGAAGAACTTGATAACAGCTTTCCAGAAACCAGGCCAAGGCATTGCTACACCTCTCCTCTACCCCGTAACCATACAGAGTCACACGCACCCTGTCACCACAGAGAATCATACACAGCCTGGCAACATGAAAGCACACCCTAGCAGCCCGCCACCAACTCACACCACTGAGAATCATTACCAACAGTAGACAACAGcttagagacacagagggagacagactaCGCTAGAGACAGACATTCTTGATGTGGGCCTGTATTCTTATGTTGTCATTGTGCCAGTCATTAATTTGAAAATAGCATTTGGTTTCGGTATCAAAACTTCAATGTGATCCTTTAAATCTCTTTACATCTGTAGTATCGACGTTCTATATTGGTGTTTAAAATGTGTTTGTAAGACAGTATTGTTGCTATATTTGATTACAACTCAACTACATAGTTTCATGTCAGCCGATTAAATAGTATGCTTTATTTTTAAAGTAAAATAATTTCTAACTGACAAATGAAAATGTGTTACCAATGCTAATAAATAAATGCCATTGGTT
>TU1983752
ACTGAGATCTGCCAGCATCCACACATTACAGACATTACAGAAAGAGAGGTGTCAGCTGGTGTTCTGAGCTTGGTTTTAGGAGGCTGAAAGTCGACTATTGAGAGGATAGTGTtagcagtatagtagtgtggAGTGGTCCACAGCCATGGAACAGGAAAAACTAGCCGTGTACCACGGAGCCATcagcagagaggagggggagatgaggcTGTGGACAGCAGGACGGGACGGCAGCTACCTGATACGCAACAGTGAGAGTCTAGCTGGGCTCTACTGCCTCTGTGTGCTaCTACTCCCGGTGTGGAGAAACGATACTTTCGGAAAATGAAGAACTTGATAACAGCTTTCCAGAAACCAGGCCAAGGCATTGCTACACCTCTCCTCTACCCCGTAACCATACAGAGTCACACGCACCCTGTCACCACAGAGAATCATACACAGCCTGGCAACATGAAAGCACACCCTAGCAGCCCGCCACCAACTCACACCACTGAGAATCATTACCAACAGTAGACAACAGcttagagacacagagggagacagactaCGCTAGAGACAGACATTCTTGATGTGGGCCTGTATTCTTATGTTGTCATTGTGCCAGTCATTAATTTGAAAATAGCATTTGGTTTCGGTATCAAAACTTCAATGTGATCCTTTAAATCTCTTTACATCTGTAGTATCGACGTTCTATATTGGTGTTTAAAATGTGTTTGTAAGACAGTATTGTTGCTATATTTGATTACAACTCAACTACATAGTTTCATGTCAG

Function

NR:

description
SH2 domain-containing protein 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165066.2 False 911 mRNA 0.44 3 35503691 35510121
TU1983752 True 772 lncRNA 0.46 2 35503671 35510026

Neighbor

gene id symbol gene type direction distance location
LOC110500296 LOC106609097 coding upstream 235891 35071370 ~ 35267800 (+)
LOC110500295 LOC106609100 coding upstream 470275 35029259 ~ 35033416 (+)
LOC110501070 wnt7b coding upstream 572520 34917692 ~ 34931171 (+)
LOC118942784 NA coding upstream 711127 34784413 ~ 34792564 (+)
LOC110500293 LOC106609102 coding upstream 721108 34766720 ~ 34782583 (+)
LOC118942786 NA coding downstream 126466 35636587 ~ 35637138 (+)
LOC110500322 LOC106609072 coding downstream 278370 35788491 ~ 35982905 (+)
sepsecs sepsecs coding downstream 489700 35999821 ~ 36039069 (+)
lgi2a LOC106609075 coding downstream 547995 36058116 ~ 36094464 (+)
LOC118942923 NA coding downstream 610395 36120516 ~ 36123923 (+)
G1732024 NA non-coding upstream 61218 35440724 ~ 35442473 (+)
G1732038 NA non-coding upstream 77692 35425211 ~ 35425999 (+)
G1732034 NA non-coding upstream 99977 35402946 ~ 35403714 (+)
G1732030 NA non-coding upstream 109481 35393921 ~ 35394210 (+)
G1732029 NA non-coding upstream 111808 35391594 ~ 35391883 (+)
G1732071 NA non-coding downstream 14345 35524466 ~ 35524815 (+)
G1732129 NA non-coding downstream 25739 35535860 ~ 35536095 (+)
G1732137 NA non-coding downstream 30805 35540926 ~ 35541184 (+)
G1732141 NA non-coding downstream 32877 35542998 ~ 35543217 (+)
G1732143 NA non-coding downstream 33892 35544013 ~ 35544259 (+)
G1732028 NA other upstream 19337 35439289 ~ 35484354 (+)
LOC110500285 fam19a5 other upstream 1634714 33709461 ~ 33869016 (+)
G1729465 NA other upstream 2181930 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 3341299 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 3366995 32114413 ~ 32144886 (+)
G1732735 NA other downstream 531210 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 723001 36189389 ~ 36237829 (+)
G1733187 NA other downstream 1246868 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 1738506 37248296 ~ 37314293 (+)
G1734420 NA other downstream 1860836 37370957 ~ 37371667 (+)

Expression


Co-expression Network