sepsecs (sepsecs)


Basic Information

Item Value
gene id sepsecs
gene name sepsecs
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35999821 ~ 36039069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577629.2
GTGACCCGGaagtacttttttttttgtgaagagaaGGAGATCTCTAGCGACTGGTTCGTGACAGTGAAAACCGAAAGAAAGCAATTGTTGAGATGAATAGTGAAAACTTTTCCATAAGTGAGAAGATTGTGTCGCCATCATACATTCGCCAGGGGTCACAGGCACGTCGCAGTCATGAGCAACTGATTAGACTGCTTTTGGAACAGGGCAAATGTCCAGAGGAGGGATGGAGCGAGAGCACAATAGAACTTTTCCTGAATGAACTGGCTGTGATGGACAGCAACAACTTCTTGGGAAATTGTGGCGTTggcgagagagagggcagagtggCCTCTAGTCTGGTGGCCCGACGACATTACAGGTTAATCCATGGGATAGGACGATCTGGAGACATTGCTGCAATTCAACCCAAGGCTACAGGTTCCAGTCTGCTGAACAAGCTGACTAATTCAGTTGTGCTGGACATTTTAAAACTTTCAGGTGTGCGAAGTGTGACCAGTTGTTTCGTAGTTCCAATGGCAACAGGGATGAGCCTGACACTGTGCTTCCTAACACTTCGCCACAAGAGACCAAAGGGGCGCTACATCATCTGGCCCCGCATTGACCAGAAGTCCTGTTTCAAAGCCATGATCACTGCAGGGTTTGAACCAGTGGTGGTTGAGAACATTTTGGAGGGTGATGAGCTGAGAACAGATATGGAAGCTGTGGAACGTAAGGTGCAAGAGCTGGGAGCAGAGAACATCCTTTGCATCCACTCCACTACATCTTGCTTTGCCCCACGTGTTCCCGACAGATTGGAGGAGCTAGCCACTATGTCTGCCAAATATGATATCCCCCATGTTGTCAACAATGCTTATGGAGTGCAGTCATCCAAGTGTATGCACCTTATTCAGCAGGGAGCTCGTGTTGGAAGAATCGATGCCTTTGTACAAAGCCTGGACAAAAACTTCATGGTTCCAGTAGGTGGTGCCATAATTGCAGGTTTCAATGAGTCTTTCATTCAGGAGATCAGCAGAATGTATCCAGGTCGCGCATCAGCCTCACCCTCCCTAGATGTGCTCATCACCCTGCTCACCCTGGGAGCCAGCGGCTACAGGAAACTCCTGGCAGAGCAGAAGGAGATGTACACCTACCTGGCACAGGAGCTGAAAAGGCTTGCTGCGGCTCATGGGGAGAGACTGCTGCACACCCCACACAACCCCATATCACTGGCCATGTCTCTGGATGGCCTCCAGGCACAGAGCGGCAAGTCTGTGACTCAACTGGGCTCCATGCTGTTCACCAGGCAGGTGTCTGGGGCCAGGGTGGTTGCCCTTGGTAACAAACAGATGGTGAGCGGTCACATGTTCTGCGGCTTCATGTCCCACTCAGAGGCCTACCCACATCCCTATCTCAATGCCGCCTCGGCTGTTGGCATCACACGGGATGACGTGACACTCTGCATCAAAAGACTGGACAAGTGCCTGAAGAGCCTCAGGAAGGAAAGCAGTGCAAGAAGTGGTTCACCAATACCTCTCACAGGCCAGGAGGACCATGCTGGAGAGTGAATAAAAATATGTAGGGAAAAAGTGCTCATGTACTTTTTCAGATAGTAACATTTTATGCCTAGTGAAAATCTTCAATCCCCTTGCTTTCACATTTGTCATATTTTGCTGCCTGAAATGTGAATCTTAAAAAGGATTACAATTACAGAAATCTTCTcaaattataaaaaaaacaaagttGTATTAATTGCATAGGTCTTCACACCTCTTGCTGTGGCGTATCTAAGTAAGTTCAGGAGCAAATAAATGTGACACCTGTGGTGTGAAGACACTATGAGCTTAAACCTGAAATAATGATTGTTGGTCCATGGAAGTATAGGTCTTATAACATGTCACCATCATTAACACATGACAATACTGCATTCCAGCGGCACTGTGGAAAACAAGTTCTGTGTGACTAATGCTATTTGCTTGTACAGATTTATACTGATAAGTTATCCAATGTCTGTATGAATTGGTTGCATTCATTGAAGACTCCACTGATCATAATGACATTGAGGCAATAGTGTGGTCTATATAAAGTACCTTgaaagta

Function

symbol description
sepsecs Predicted to enable tRNA binding activity. Predicted to be involved in selenocysteine incorporation. Predicted to act upstream of or within selenocysteinyl-tRNA(Sec) biosynthetic process and translation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2D. Orthologous to human SEPSECS (Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase).

NR:

description
O-phosphoseryl-tRNA(Sec) selenium transferase

GO:

id name namespace
GO:0097056 selenocysteinyl-tRNA(Sec) biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016785 transferase activity, transferring selenium-containing groups molecular_function

KEGG:

id description
K03341 SEPSECS; O-phospho-L-seryl-tRNASec:L-selenocysteinyl-tRNA synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577629.2 True 2079 mRNA 0.47 12 35999821 36039069

Neighbor

gene id symbol gene type direction distance location
LOC110500322 LOC106609072 coding upstream 16916 35788491 ~ 35982905 (+)
LOC118942786 NA coding upstream 362683 35636587 ~ 35637138 (+)
sh2d1ab sh21a coding upstream 489700 35503671 ~ 35510121 (+)
LOC110500296 LOC106609097 coding upstream 732021 35071370 ~ 35267800 (+)
LOC110500295 LOC106609100 coding upstream 966405 35029259 ~ 35033416 (+)
lgi2a LOC106609075 coding downstream 19047 36058116 ~ 36094464 (+)
LOC118942923 NA coding downstream 81447 36120516 ~ 36123923 (+)
LOC110500325 ppp2r5b coding downstream 150320 36189389 ~ 36237829 (+)
LOC110500327 NA coding downstream 366930 36405999 ~ 36407509 (+)
LOC110500329 LOC106609084 coding downstream 387071 36426140 ~ 36457797 (+)
G1732722 NA non-coding upstream 13551 35985967 ~ 35986270 (+)
G1732467 NA non-coding upstream 116069 35866094 ~ 35883752 (+)
G1732338 rpl34 non-coding upstream 263851 35685557 ~ 35735970 (+)
G1732336 NA non-coding upstream 315649 35683917 ~ 35684172 (+)
G1732334 NA non-coding upstream 316725 35682873 ~ 35683096 (+)
G1733069 NA non-coding downstream 495765 36534834 ~ 36549893 (+)
G1733094 NA non-coding downstream 535267 36574336 ~ 36576894 (+)
G1733056 NA non-coding downstream 550494 36589563 ~ 36590879 (+)
G1733115 NA non-coding downstream 571225 36610294 ~ 36610497 (+)
G1733116 NA non-coding downstream 571547 36610616 ~ 36610846 (+)
G1732028 NA other upstream 515467 35439289 ~ 35484354 (+)
LOC110500285 fam19a5 other upstream 2130844 33709461 ~ 33869016 (+)
G1729465 NA other upstream 2678060 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 3837429 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 3863125 32114413 ~ 32144886 (+)
G1732735 NA other downstream 2262 36041331 ~ 36042488 (+)
G1733187 NA other downstream 717920 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 1209558 37248296 ~ 37314293 (+)
G1734420 NA other downstream 1331888 37370957 ~ 37371667 (+)

Expression


Co-expression Network