lgi2a (LOC106609075)


Basic Information

Item Value
gene id lgi2a
gene name LOC106609075
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36058116 ~ 36094464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577630.2
aaattGCGCGAAGGGAGCTGCAGCTGAATTGCTGATGTAAGGGGTTCAGTGCAGCATTTCATGTCGCAGGGTGGAAGGAAGCTTTGCAATCTGCCCGGCGTTTTTTGCTATCTCACACATGCAAATCCGACAAAAAAATATGCTGTCAATAGTTAAAAACTGCGTATTATTTTCAGTTGTGTGCTTGTACATAGCTACGCCGATTTCTTTAAAAAGGATTTCCAGATGTCCTTCAGCATGCAGCTGTTCCAAGGAGTCCATCATTTGTTTTGGATCTTCCTATGTCCCAAGGATCATCCCGAACGACATTAATTCACTGAGCATTGTCAACGGGTCCTTCTCCGAGATCAAGGAGACCATGTTTGCTCACATGCCATCTCTCCAACTCCTACTTCTTAATTCAAATTCAGTGATGACAATAAGGGACGATGCATTTTCTGGCCTTCCACACCTGGAGTACCTGTTCATTGAGAGTAATAAGATAGAGACGGTCTCCAAATATTCCTTCAGAGGACTCAGGGACCTGACTCACCTGTCTTTGGCAAACAATAAATTAAAAGCGTTACCCAGGGATTCCTTCATCGACCTGGACTCATTGATAGAGCTTGACCTGCGAGGAAATGCCTTTGAGTGTGACTGCCGTGCGAAGTGGCTGATGATGTGGCTGAAGAGCACCAATGCCACGGTTTCCGATGTAATTTGTGCCGGACCCAAGGACATGAAGGACAAGCGACTGAACGACATGGCCAGCCTGCACAATGAATGCATCTCCACTGATTTTATCCACCATCAGTCGGTGCCATCAGAGTCTCTGTCTGTGGACACATTCTCTTATAAAAATGACGTCTATGTGGCCATCGCTGCACCCAACACAGAGAGTTGTATGGTTTTACAGTGGGACCACATTGAGATGAACTTCAGGACTTATGACAATATCACAGGCCAGTCAATCGTTGGGTGCAAATCGGTCATCATCCAGAACCAGGTCTTTGTCATAGTGGCCCAGCTCTTTGGTGGTTCTCACATATACAAGTTTGATGAAGACCAGAGCAGGTTCAGCAAGTTTCAGGATATTGAGGTATCCAAGATCTCCAAGCCCAACGACATTGAAGCCTTCCAGATTTCTGGCGAGTGGTTCTTTGTGATTGCCGATAGCTCAAAGGCGGGGCTCTCCACTCTCTACAAGTGGAACGACAAGGGCTTCTACTCCTATCAGTCCCTGCATGAGTGGTTCCGTGACACTGACGCTGAGTTTGTGGATCTGGATGGCAAGTCCCACCTCATCTTGGCCAGCCGCTCCCAGGTGCCTGTAATCTACCAGTGGAGCAGGAATGCCCAGACGTTTGCCCTGCAGGGAGAGATCCCCAACATGGAGGATGTGGTGGCCGTCAAGACCTTCCGAGTCAAGGaggacctctacctggccatgacGCGCTATATAGGTGACTCTAAGGTACTCCGCTGGAGTGGCAAACAGTTTATGGAGATCCAATCCCTGCCCTCACGAGGTGCTATGATTCTCCAGCCATTCTCCTTCAAAGAGCGCCACTATCTGGCCCTGGGCAGCGACTTTACCTTCTCACAGATCTACCTGTGGGACGCTGATAAGAAACTCTTTGAGCGCTTCAAAGAGGTGTACATCATGGCGCCACGTTCCTTTACCGTGGTATCCACCGACCGCCGGGACTTCATTTTCTCCTCCAGCTTCAAGGGCAATACACAGATCTTCGAGCATATCATCATCGACTTGAGCTTATGAGATTTCCAGGGCTTCAGCCCCTGCATCTTATGTCTTCCATTATAAACGTTGACATTTttgtgggggaaaggagggagaagggtccaagagagggagaggtaactCAAGCAGCATTATCAAATATTTTTTCCTATTAAGCACCTCTTGTGTTTGTATACCATTTTAAATCGGTCATGTCCCTACTGTTCTATTGACTTTTATACGCACAAGTAATCTCGGTTAACCAAGAACTAAAATCTCAAGTCATTTGGTCACCTCGGTGATTAAGTTGTGGATCTATACGTGGTAGTTCCGGTTTGCAAAGTCTTGCAAAAGGAAACTCTCAGCCAAGTCTTTTCCTTTTCCACAATGTACATTGCCTTATCAGCACAGGCgttttagtgttttgtttgtcctGCTGCTGCGCCATCTAGCTATGAATAGTGATCACTCCCAACTGCTTTGTCGATACAGGGAAAAGTCGCAGCAGCGCAAACCTTTAATAACAATATTGTGACACAGAACCATTGTGATCCCGAACCCAGAACTCTTAAACAATGATTAGCAGTACACATTTATGTTTGTATTTGTTTATATCGTCTATATAAGCAGTTTCACAAATATTTGGGGATTTACAAAAGTTTTCATTGCTCATATTTGTTCTTTATTCCACATAAATGTACAATTACTCAAGACCCTAAACAAGTCCTTGCTGCAGAGTACAactagatatgtgtgtattgattgACTAAGGGCTATATTCAATCAGATCTGCTTTAGCCAACAACCATATAGCTTATTTTTGGGGCTGTGTCagaggtggaactgcgttagagctgtcaagTCCACAAGCAGCAcatggcattatacctaaagcagacattgccattggctgcatggAGTCACATTacgagaaatcccatgcagccttgttgaCAAGTtcaaacactggaatgtgagatgtaatctagaGCTCAATTAGGCTGATGATTTTCAATTTGAGCATCATTATTtctacagtgtatatatatagcctacactttctcattCTGAACTTCTAACGCAAGTAGGATGGTTGTTGCTTCGTAACAATGATCTGCTCAtctgctcaccgatttgacagctACAACGCAGTTACACCTCCGACACTTACAAAACATCAGTAATGCGGGTTTTGGCTGTTGCCAACTCTTGATCTGATTGAGTATATGCCTGAGGCATCATCATAGATATTGACTATGCTAGCTTGATTATTAAAAACATTGACCAAATAAGTCAACATTAATGCTCTACAGATGTATTCTTTTGAACAATAATGATACATATTAACATATTAACACATACTTTCTGACAGAAACACATACTTTCTGACAGCAAAGTTACAGTTGGTGATCAGAGTTCAAATGAAAATGTATCATTTGTTTTGAAGAGAACACAGACACTATAATTGtattgtagttttttttttacatacatttcccGGCCTCAAATGTAACATTTGCATAGTATATAATTTTACTGGTAGCGTATTTAACCACCATATGCCAATATTTGAGCCATACCTCCAACAATTCCTCTTCTAAAGAAACACGTGTATGCTGCGGGGAACTGTCCACTGTAAACTCCTGTCTTGAGGACTAGTAAAAATTGCTTTTCATAGAAACATATATATGAATGTTCTCTGCATGTTGATAAATGAGGCCGACTAAGAGTATGAGTCTACTTTATTAGACTATAGGCTGCTAGAGGAAATTCCTGCACAGTCTGCAGGTTCTCAATTATCATTTCTTTCACTAGCAGGTTGAAATATCCAGTATACAACTGCGCATAACCAGCTAGCATTAGTATGGTGGCTAAGTGTGACATGTTTGCCTATGGGAAATCCTAACAGCTGCTTAAATTGTTAGCTGAGTTTTAAACCAGACTTGTTCCTCTACTTTAGCCTCTAATATGCTACATTGTAAGCATGGCCCCAATGAGTTCAGACAAGTTCATGTACTGCATGCAGGCATTATTGATAGGGTTGagtaattattttagcaaaacacTGACCCTTCCAGTGTCACAGCTCTGTAAATAACTAGATGTCTGTCTATCAGACAATGGCATGTTTTATGCGTTTTATAGATTTAGTCAACCTATAACCTGAATATAGTCAAAAGACCAGGCCAAATTAATTAGAAGTTCAACAGTCACCGACAGAGATTTAGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577630.2 True 3950 mRNA 0.43 8 36058116 36094464

Neighbor

gene id symbol gene type direction distance location
sepsecs sepsecs coding upstream 19047 35999821 ~ 36039069 (+)
LOC110500322 LOC106609072 coding upstream 75211 35788491 ~ 35982905 (+)
LOC118942786 NA coding upstream 420978 35636587 ~ 35637138 (+)
sh2d1ab sh21a coding upstream 547995 35503671 ~ 35510121 (+)
LOC110500296 LOC106609097 coding upstream 790316 35071370 ~ 35267800 (+)
LOC118942923 NA coding downstream 26052 36120516 ~ 36123923 (+)
LOC110500325 ppp2r5b coding downstream 94925 36189389 ~ 36237829 (+)
LOC110500327 NA coding downstream 311535 36405999 ~ 36407509 (+)
LOC110500329 LOC106609084 coding downstream 331676 36426140 ~ 36457797 (+)
si:dkey-183c6.8 LOC106609082 coding downstream 428907 36523371 ~ 36588040 (+)
G1732722 NA non-coding upstream 71846 35985967 ~ 35986270 (+)
G1732467 NA non-coding upstream 174364 35866094 ~ 35883752 (+)
G1732338 rpl34 non-coding upstream 322146 35685557 ~ 35735970 (+)
G1732336 NA non-coding upstream 373944 35683917 ~ 35684172 (+)
G1732334 NA non-coding upstream 375020 35682873 ~ 35683096 (+)
G1733069 NA non-coding downstream 440370 36534834 ~ 36549893 (+)
G1733094 NA non-coding downstream 479872 36574336 ~ 36576894 (+)
G1733056 NA non-coding downstream 495099 36589563 ~ 36590879 (+)
G1733115 NA non-coding downstream 515830 36610294 ~ 36610497 (+)
G1733116 NA non-coding downstream 516152 36610616 ~ 36610846 (+)
G1732735 NA other upstream 15628 36041331 ~ 36042488 (+)
G1732028 NA other upstream 573762 35439289 ~ 35484354 (+)
LOC110500285 fam19a5 other upstream 2189139 33709461 ~ 33869016 (+)
G1729465 NA other upstream 2736355 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 3895724 32153116 ~ 32162456 (+)
G1733187 NA other downstream 662525 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 1154163 37248296 ~ 37314293 (+)
G1734420 NA other downstream 1276493 37370957 ~ 37371667 (+)
G1734479 NA other downstream 1470964 37565428 ~ 37568953 (+)

Expression


Co-expression Network