LOC118942923


Basic Information

Item Value
gene id LOC118942923
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36120516 ~ 36123923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038587.1
cgaatgaaatgggcccgtatacgttgtaccagatatctttactcataattaaactgtcacttgtcatacaatagaccaccttgtctgaatcgatccttgaccggctcaccctcctacatatcccattattaaCAGAAACTTGGTAGCAGAGGGATGGTTTACTAACGACCCAGTCCAGAGTGGTTGATGTGGGTGTGAGGGGGCGAGTTGGTGAAAGGACGGTTCCCGGAGGACAGGTGAAAACCATTCGGGGGTGGACAACAATTCTGCTCAACTCGGGAAACTGATCTCTGGTCGACCACAAAATAAGGTAAGCAAAACCTGTTTTATCAAACTTTGCATATTGTCGAATAGTCATACCAAATTACGATCAGTAGTACCGAGTGTGGGTAAGAATTTTTGTGTAAATTTTACGTAAATAATGGACTTGAAATTGACAGTGAAGTAAACATATGTGGTAATTAGAATATCCCGATAGTCCGGCATGAgaacggtccggtggcagacaccggtaagggatGAGTAGTAGTTAGAATATTCTGATAGTCCGGCATGAgaacggtccggtggcagacaccggtaagggatatttagtagtagacctaatattaatAGAATATTCTGATAGTCCGGCTGTGAACGGTCTGGTGGCAGACACCAGTAAGGAATAAAATATAGTCTAGGATAGATTTTCACCGATAGTCCGGCTAGTGACCGGTCCAGCTGTGTCTGGTAAGGTGGTCTATTATTGAGTATTGATGTGACCAGGATTATATTCTATGTATAAGTGATATTCGTTCGGGCGTCTGAAAAAGGGCGTGATCAGTTTTATCATTAACATCTGAGTATGATTCGATCATTCATCTGCAAAAGATAAATCCAATTAGTGTTTTAGATAGAACCAATAGCCGGTAGTGTCCGGTGAGGTTAAAATCCAATAGCTGGTAGTGTCCGGTGAGGTGTCTACAATAGATTAATGTATGATTAAGATATGTTGGACTGAAAAGTCCGCTTTGTGTTGTGGCCAGAATGAATGTGATAAATGTACTAATGTGTGATGTCATAGAATAAGATGTTCTAATTGAACAATTGTGTTTAAAACTATGTCCATGTAATAATATTTGTGTGTTGACTATAGACTAAATGTAAACGGCGTTTCACAAGTCCCtgatattattaccattatttaAAATTATTGTGAGCAAAGTATTTcctaaattcaaaaaaaaaaaaaaaataatctattaTCCAAATTGTTAAAACATAGTTTATGTTGATAATCATTTCCTGAATTGGGGGCTCGTGTTTAATCATTAAAACATTATTGTTTAAAATTCTGGATATATGACGGAGAGGCTCTGAGTTAAGACAGAGTACGAGTAATAGTGTCTCCTAAGAATACATCACTGGCACGAGCCAGTGACGGGCTAAGTATATCCaaagagtgtacaaaatatttctaaaaaaaaacACGTCAAATCAGCACCtaagacaggtggaggagaggtttgGCATTACACACAAGTTTGGCTCTGTGTATAGGCCGCAATCGCAGGGCCTTGTGGAACGCTGTAATCAAAATCtgaaagctaagatagctaaagtgTGTGCAGGGACACATCTTTCACCCCATGAAATAATGACAGGTAGAGTAATGCCAGGGCCACCAAgagagggaggtcatatgcccccTCTTGATGTGCACcaaatagggatgtctgactatGTGAAGAAATTGACGGAATTGTCTGCAGCTCTCTCCAAACAGATACACCGTGTCGCAGAGAGGGAGCTGACTGACGTCCCGGAACAACCAAGGGTAAAAGTTGGGGACTGGGTAAGGATCaaggtccacaagagaaagtgggctgatcccaggtggactggaccgtacgaagtgaaggaggttacttcacactcagtccaggtcaaaggtaaattaGGCGCACCTTGGCACCACCTGACACATTGTACACCAGCCCCAACCCCTGCCAGAACTCTGGCTGAAGTAAGAAGTGATTTACTCACATCCAATTCGAATTCAAATTCTGACATCCCTCCCGTCTGATCATGTGGAGGAGACTCCCATCCtcagatgatagggacactagagTAGCACCATGGGCTAGAAGGGCTAGGAGACCATGGGAAAGACTGGGTTGTTCTGGCCCATTGTTTGTCCTAATTATAGTCAATGTTGTTTTGACATTGGGAGTAATGATATGGGCAGCCCAGCGTATAATCACTGACCAGGAACAGACTACCCAGCTAAACATCACCAATGCTTCAATATTCTCGGATACGCATGTTCTGTCTAAACGTCAAGTTCAGAATAATGACTTTGAGTGTACTGCAGAATTGATTAGGTCAGCTACTCTGTGTATCCCGCCTAACGCTACTACCACTGTTATACTTACCTGGGGTGTTATTGGAAGCCCAGGTGGCGGTTATGGTACTCATGCAATCAGTTGGTCTAGATCAGTGTGGTACATGACAGAAGGGGGGTATAATAAATGGACGTGGAAGAATTTAGTGGCAGAGACTGGTCCTGACTGGTCTAGCTGGACAGTGCATCAGATGGCACTCCTGTGGCGGAGCAGGTTGACGTTAACTAAAGTTACAACTGGTTTGAAATTGGTAATCAAACACAGGGAAGGTGGTATGACTTATGACCTCCATTGTAACTTTCCTttgtggtctgatcagcctcattggaaagccatttggatggagaatctagggtaatttgtaatactgatattaaggtaatttaatacaaaaatgcagtgaaatttacattatagtgtcaatatattttctctgatgaacgtGGTGTGAAAATTTAGCTAGGATAAGTTTTATTTATGGTAGACTCATGTTAAGTATTTGGGACATATTTTGAGCAAACAGGGCAGGGAAGAAATTGAGATATTTGTGTTTGGTTTTAACACCTGTATATAGGGGGTGCCATTTGAATATTTAATTTGTGGTCATGGGTAAtacggtttgtttttgtttttattttttaaggtaaattaattatagtggggtttaattaacctatataaggactttagaaagtgccaccatagacatgtttttctaaaaaaaaaaatccatgagtttagataaagccaaacagtgagacatttagttcaaatttggaaacatgagaaaacgagctacagacagataaggggaaaaggcagacagaagagccctcccctgcactgcagagaccttgaaggttggagagcagagaggataAGTTTTAAAAGGGAGCCAGGACGAGCAAAGATAACAGAATGTGTAGATAACAGTTACTGAGTGGAGACAaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106589496

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038587.1 True 3339 mRNA 0.41 2 36120516 36123923

Neighbor

gene id symbol gene type direction distance location
lgi2a LOC106609075 coding upstream 26052 36058116 ~ 36094464 (+)
sepsecs sepsecs coding upstream 81447 35999821 ~ 36039069 (+)
LOC110500322 LOC106609072 coding upstream 137611 35788491 ~ 35982905 (+)
LOC118942786 NA coding upstream 483378 35636587 ~ 35637138 (+)
sh2d1ab sh21a coding upstream 610395 35503671 ~ 35510121 (+)
LOC110500325 ppp2r5b coding downstream 65466 36189389 ~ 36237829 (+)
LOC110500327 NA coding downstream 282076 36405999 ~ 36407509 (+)
LOC110500329 LOC106609084 coding downstream 302217 36426140 ~ 36457797 (+)
si:dkey-183c6.8 LOC106609082 coding downstream 399448 36523371 ~ 36588040 (+)
LOC110500825 LOC106609032 coding downstream 542688 36666611 ~ 36756612 (+)
G1732722 NA non-coding upstream 134246 35985967 ~ 35986270 (+)
G1732467 NA non-coding upstream 236764 35866094 ~ 35883752 (+)
G1732338 rpl34 non-coding upstream 384546 35685557 ~ 35735970 (+)
G1732336 NA non-coding upstream 436344 35683917 ~ 35684172 (+)
G1732334 NA non-coding upstream 437420 35682873 ~ 35683096 (+)
G1733069 NA non-coding downstream 410911 36534834 ~ 36549893 (+)
G1733094 NA non-coding downstream 450413 36574336 ~ 36576894 (+)
G1733056 NA non-coding downstream 465640 36589563 ~ 36590879 (+)
G1733115 NA non-coding downstream 486371 36610294 ~ 36610497 (+)
G1733116 NA non-coding downstream 486693 36610616 ~ 36610846 (+)
G1732735 NA other upstream 78028 36041331 ~ 36042488 (+)
G1732028 NA other upstream 636162 35439289 ~ 35484354 (+)
LOC110500285 fam19a5 other upstream 2251539 33709461 ~ 33869016 (+)
G1729465 NA other upstream 2798755 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 3958124 32153116 ~ 32162456 (+)
G1733187 NA other downstream 633066 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 1124704 37248296 ~ 37314293 (+)
G1734420 NA other downstream 1247034 37370957 ~ 37371667 (+)
G1734479 NA other downstream 1441505 37565428 ~ 37568953 (+)

Expression


Co-expression Network